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chemistry", "2008 Oct 31", "Aoki K, Porterfield M, Lee SS, Dong B, Nguyen K, McGlamry KH, Tiemeyer M", "protein_xref_pubmed", "18725413", "protein_xref_glyconnect", "None", "G38979OV" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G57321FI" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G60230HH" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G70101JE" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G74724QE" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G82348BZ" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G74724QE" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G82348BZ" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G74724QE" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G82348BZ" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G39943KJ" ], [ "", "The diversity of O-linked glycans expressed during Drosophila melanogaster development reflects stage- and tissue-specific requirements for cell signaling.", "The Journal of biological chemistry", "2008 Oct 31", "Aoki K, Porterfield M, Lee SS, Dong B, Nguyen K, McGlamry KH, Tiemeyer M", "protein_xref_pubmed", "18725413", "protein_xref_glyconnect", "None", "G32550BI" ], [ "", "The diversity of O-linked glycans expressed during Drosophila melanogaster development reflects stage- and tissue-specific requirements for cell signaling.", "The Journal of biological chemistry", "2008 Oct 31", "Aoki K, Porterfield M, Lee SS, Dong B, Nguyen K, McGlamry KH, Tiemeyer M", "protein_xref_pubmed", "18725413", "protein_xref_glyconnect", "None", "G00033MO" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G10471FG" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G39188ZX" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G10471FG" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G39188ZX" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G46687AB" ], [ "", "The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing.", "The Journal of biological chemistry", "2006 Feb 24", "Leonard R, Rendic D, Rabouille C, Wilson IB, Preat T, Altmann F", "protein_xref_pubmed", "16339150", "protein_xref_glyconnect", "None", "G05724UK" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer 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"G66538GV" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G93993PD" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G64527OM" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G63628AV" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", 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"G70101JE" ], [ "", "The diversity of O-linked glycans expressed during Drosophila melanogaster development reflects stage- and tissue-specific requirements for cell signaling.", "The Journal of biological chemistry", "2008 Oct 31", "Aoki K, Porterfield M, Lee SS, Dong B, Nguyen K, McGlamry KH, Tiemeyer M", "protein_xref_pubmed", "18725413", "protein_xref_glyconnect", "None", "G46831QF" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G51287LK" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G70101JE" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G72291OX" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G94854LT" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G63628AV" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G49874UX" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G94854LT" ], [ "", "Glycomic studies of Drosophila melanogaster embryos.", "Glycoconjugate journal", "2006 Jul", "North SJ, Koles K, Hembd C, Morris HR, Dell A, Panin VM, Haslam SM", "protein_xref_pubmed", "16897177", "protein_xref_glyconnect", "None", "G31685JQ" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G60145BJ" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G23453IV" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G05724UK" ], [ "", "Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo.", "The Journal of biological chemistry", "2007 Mar 23", "Aoki K, Perlman M, Lim JM, Cantu R, Wells L, Tiemeyer M", "protein_xref_pubmed", "17264077", "protein_xref_glyconnect", "None", "G55383ZG" ] ] }, "readme": "Name\n - Fruitfly Proteoform Citations (GlyConnect)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-09-02T10:28:05.203794\n\nModified on\n - 2023-03-14T17:09:38.835Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file httpss://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (httpss://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: fruitfly_proteoform_citations_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_citations_glycosylation_sites_glyconnect.csv\n Name: fruitfly_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"6\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"3\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"6\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"6\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"4\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"65\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_proteoform_citations_glycosylation_sites_glyconnect.csv" }