{ "bcoid": "GLY_000674", "title": "Fruitfly UniProtKB Xref FlyBase", "description": "The Fruitfly UniProtKB Xref FlyBase contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_flybase.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "FlyBase cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "M9PJ12-1...", "protein_xref..." ], [ "P34082-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "M9PJ12-1", "protein_xref_flybase", "FBgn0263772", "CG43689" ], [ "P34082-1", "protein_xref_flybase", "FBgn0000635", "Fas2" ], [ "P40796-1", "protein_xref_flybase", "FBgn0011638", "La" ], [ "P40797-1", "protein_xref_flybase", "FBgn0013726", "pnut" ], [ "P40794-1", "protein_xref_flybase", "FBgn0004389", "bnk" ], [ "P40795-1", "protein_xref_flybase", "FBgn0000719", "fog" ], [ "P40792-1", "protein_xref_flybase", "FBgn0010333", "Rac1" ], [ "P40793-1", "protein_xref_flybase", "FBgn0010341", "Cdc42" ], [ "P40791-1", "protein_xref_flybase", "FBgn0011656", "Mef2" ], [ "P40798-1", "protein_xref_flybase", "FBgn0001978", "stc" ], [ "P40421-1", "protein_xref_flybase", "FBgn0265959", "rdgC" ], [ "P40423-1", "protein_xref_flybase", "FBgn0003514", "sqh" ], [ "P40427-1", "protein_xref_flybase", "FBgn0000611", "exd" ], [ "A8JRH2-1", "protein_xref_flybase", "FBgn0085329", "CG34300" ], [ "A2VEV2-1", "protein_xref_flybase", "FBgn0085352", "CG34323" ], [ "A2VEV0-1", "protein_xref_flybase", "FBgn0085331", "CG34302" ], [ "P08841-1", "protein_xref_flybase", "FBgn0003888", "betaTub60D" ], [ "Q9VE87-1", "protein_xref_flybase", "FBgn0038607", "hmw" ], [ "Q9VE86-1", "protein_xref_flybase", "FBgn0038608", "WRNexo" ], [ "Q9VE85-1", "protein_xref_flybase", "FBgn0038609", "Nup43" ], [ "P05389-1", "protein_xref_flybase", "FBgn0003274", "RpLP2" ], [ "A0A6H2EE55-1", "protein_xref_flybase", "FBgn0029922", "CG14431" ], [ "A0A6F7UCJ3-1", "protein_xref_flybase", "FBgn0262353", "CG43051" ], [ "Q9VK71-1", "protein_xref_flybase", "FBgn0004394", "pdm2" ], [ "Q9V776-1", "protein_xref_flybase", "FBgn0033982", "Cyp317a1" ], [ "Q9VRR2-1", "protein_xref_flybase", "FBgn0035649", "CG10483" ], [ "Q9VRR3-1", "protein_xref_flybase", "FBgn0052407", "CG32407" ], [ "Q9VRR0-1", "protein_xref_flybase", "FBgn0035647", "CG10486" ], [ "M9PEG2-1", "protein_xref_flybase", "FBgn0035648", "CG13288" ], [ "M9PBR6-1", "protein_xref_flybase", "FBgn0053523", "CG33523" ], [ "Q8SX44-1", "protein_xref_flybase", "FBgn0053969", "CG33969" ], [ "M9PEA4-1", "protein_xref_flybase", "FBgn0035656", "CG10479" ], [ "P04388-1", "protein_xref_flybase", "FBgn0003206", "Ras64B" ], [ "A1ZB47-1", "protein_xref_flybase", "FBgn0053958", "CG33958" ], [ "A1ZB42-1", "protein_xref_flybase", "FBgn0260401", "MED9" ], [ "A1ZB48-1", "protein_xref_flybase", "FBgn0034318", "CG14500" ], [ "A1ZB49-1", "protein_xref_flybase", "FBgn0050114", "CG30114" ], [ "Q9VYT1-1", "protein_xref_flybase", "FBgn0030346", "BORCS5" ], [ "Q9VLI9-1", "protein_xref_flybase", "FBgn0260861", "Trs23" ], [ "Q9VLI1-1", "protein_xref_flybase", "FBgn0032067", "LManIV" ], [ "Q9VLI0-1", "protein_xref_flybase", "FBgn0032068", "LManV" ], [ "Q9VLI3-1", "protein_xref_flybase", "FBgn0032065", "CG12438" ], [ "Q9VLI2-1", "protein_xref_flybase", "FBgn0032066", "LManIII" ], [ "Q9VLI4-1", "protein_xref_flybase", "FBgn0003209", "raw" ], [ "Q9VLI4-1", "protein_xref_flybase", "FBgn0003209", "raw" ], [ "Q9VLI6-1", "protein_xref_flybase", "FBgn0032061", "CatB" ], [ "Q95RA8-1", "protein_xref_flybase", "FBgn0038965", "mats" ], [ "Q27869-1", "protein_xref_flybase", "FBgn0086768", "Pcmt" ], [ "E1JJ52-1", "protein_xref_flybase", "FBgn0261261", "plx" ], [ "A0A0B4KHI4-1", "protein_xref_flybase", "FBgn0038826", "Syp" ], [ "A0A0B4KG03-1", "protein_xref_flybase", "FBgn0028487", "f-cup" ], [ "A0A0B4KHI4-1", "protein_xref_flybase", "FBgn0038826", "Syp" ], [ "Q02870-1", "protein_xref_flybase", "FBgn0001179", "hay" ], [ "E1JH39-1", "protein_xref_flybase", "FBgn0260959", "MCPH1" ], [ "Q7JUM3-1", "protein_xref_flybase", "FBgn0034270", "PIG-A" ], [ "Q8SXV2-1", "protein_xref_flybase", "FBgn0051675", "CG31675" ], [ "M9PB30-1", "protein_xref_flybase", "FBgn0053196", "dpy" ], [ "M9PB30-1", "protein_xref_flybase", "FBgn0053196", "dpy" ], [ "M9PB30-1", "protein_xref_flybase", "FBgn0053196", "dpy" ], [ "M9PEM2-1", "protein_xref_flybase", "FBgn0083962", "CG34126" ], [ "Q8SXV4-1", "protein_xref_flybase", "FBgn0032283", "CG7296" ], [ "Q95R34-1", "protein_xref_flybase", "FBgn0023525", "CG3191" ], [ "Q8SXV9-1", "protein_xref_flybase", "FBgn0030829", "CG12998" ], [ "Q95R35-1", "protein_xref_flybase", "FBgn0052064", "S-Lap4" ], [ "Q9VME8-1", "protein_xref_flybase", "FBgn0031803", "ppk14" ], [ "Q9VME9-1", "protein_xref_flybase", "FBgn0031802", "ppk7" ], [ "Q9VME0-1", "protein_xref_flybase", "FBgn0031811", "CG13982" ], [ "Q9VME1-1", "protein_xref_flybase", "FBgn0259715", "CG42369" ], [ "Q9VME2-1", "protein_xref_flybase", "FBgn0259716", "Nepl6" ], [ "Q9VME3-1", "protein_xref_flybase", "FBgn0031808", "Nepl5" ], [ "Q9VVS1-1", "protein_xref_flybase", "FBgn0036808", "Dic4" ], [ "Q9VME5-1", "protein_xref_flybase", "FBgn0043854", "slam" ], [ "Q9VVS3-1", "protein_xref_flybase", "FBgn0036810", "CG6885" ], [ "Q9VVS2-1", "protein_xref_flybase", "FBgn0036809", "CG12477" ], [ "Q9VZZ6-1", "protein_xref_flybase", "FBgn0035355", "CG16985" ], [ "A1ZAX1-1", "protein_xref_flybase", "FBgn0034258", "eIF3c" ], [ "A0A0B4KFC0-1", "protein_xref_flybase", "FBgn0003396", "shn" ], [ "A0A0B4KFC4-1", "protein_xref_flybase", "FBgn0003254", "rib" ], [ "Q86S05-1", "protein_xref_flybase", "FBgn0020279", "lig" ], [ "P17336-1", "protein_xref_flybase", "FBgn0000261", "Cat" ], [ "A0A0B4KFC9-1", "protein_xref_flybase", "FBgn0034440", "CG10073" ], [ "A8JQT5-1", "protein_xref_flybase", "FBgn0265082", "Cdep" ], [ "P56079-1", "protein_xref_flybase", "FBgn0010350", "Cds" ], [ "Q9I7P2-1", "protein_xref_flybase", "FBgn0031751", "CG9016" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref FlyBase\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-09-01T11:43:42.773513\n\nModified on\n - 2022-09-26T09:08:12.448259\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref FlyBase contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to FlyBase database accessions/identifiers. If you use this dataset please provide proper attribution to FlyBase and GlyGen\n - FlyBase is a database for Drosophila gene and genomes. https://flybase.org/\n\nDescription Domain\n Keywords\n - Drosophila\n - FlyBase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to flybase database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_flybase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_flybase.csv\n Name: fruitfly_protein_xref_flybase.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_flybase.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13817\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13971\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"14007\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_flybase.csv" }