{
    "bcoid": "GLY_000668",
    "title": "Fruitfly UniProtKB Xref PANTHER",
    "description": "The Fruitfly UniProtKB Xref PANTHER contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...",
    "filename": "fruitfly_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": "Drosophila melanogaster",
        "molecule": "Protein",
        "tags": "Panther cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P40796-1...",
                "protein_xref..."
            ],
            [
                "P40792-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P40796-1",
                "protein_xref_panther",
                "PTHR22792",
                "LUPUS LA PROTEIN-RELATED"
            ],
            [
                "P40792-1",
                "protein_xref_panther",
                "PTHR24072",
                "RHO FAMILY GTPASE"
            ],
            [
                "P40793-1",
                "protein_xref_panther",
                "PTHR24072",
                "RHO FAMILY GTPASE"
            ],
            [
                "P40798-1",
                "protein_xref_panther",
                "PTHR12360",
                "NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1"
            ],
            [
                "P08841-1",
                "protein_xref_panther",
                "PTHR11588",
                "TUBULIN"
            ],
            [
                "Q9VE87-1",
                "protein_xref_panther",
                "PTHR23035",
                "UNCHARACTERIZED"
            ],
            [
                "P05389-1",
                "protein_xref_panther",
                "PTHR21141",
                "60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER"
            ],
            [
                "P04388-1",
                "protein_xref_panther",
                "PTHR24070",
                "RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY"
            ],
            [
                "A1ZB42-1",
                "protein_xref_panther",
                "PTHR20844",
                "MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 9"
            ],
            [
                "Q9VYT1-1",
                "protein_xref_panther",
                "PTHR31634",
                "BLOC-1-RELATED COMPLEX SUBUNIT 5"
            ],
            [
                "Q9VLI9-1",
                "protein_xref_panther",
                "PTHR23249",
                "TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT"
            ],
            [
                "Q9VLI6-1",
                "protein_xref_panther",
                "PTHR11465",
                "CATALASE"
            ],
            [
                "Q95RA8-1",
                "protein_xref_panther",
                "PTHR22599",
                "MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB"
            ],
            [
                "Q27869-1",
                "protein_xref_panther",
                "PTHR11579",
                "PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE"
            ],
            [
                "E1JH39-1",
                "protein_xref_panther",
                "PTHR14625",
                "MICROCEPHALIN"
            ],
            [
                "M9PEM2-1",
                "protein_xref_panther",
                "PTHR22774",
                "UNCHARACTERIZED"
            ],
            [
                "Q95R35-1",
                "protein_xref_panther",
                "PTHR11963",
                "LEUCINE AMINOPEPTIDASE-RELATED"
            ],
            [
                "Q9VME8-1",
                "protein_xref_panther",
                "PTHR11690",
                "AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED"
            ],
            [
                "Q9VME9-1",
                "protein_xref_panther",
                "PTHR11690",
                "AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED"
            ],
            [
                "Q9VME2-1",
                "protein_xref_panther",
                "PTHR11733",
                "ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED"
            ],
            [
                "Q9VME3-1",
                "protein_xref_panther",
                "PTHR11733",
                "ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED"
            ],
            [
                "Q9VVS2-1",
                "protein_xref_panther",
                "PTHR11224:SF38",
                "E3 UBIQUITIN-PROTEIN LIGASE MAKORIN-3-RELATED"
            ],
            [
                "Q9VVS2-1",
                "protein_xref_panther",
                "PTHR11224",
                "MAKORIN-RELATED"
            ],
            [
                "Q9VZZ6-1",
                "protein_xref_panther",
                "PTHR21660",
                "THIOESTERASE SUPERFAMILY MEMBER-RELATED"
            ],
            [
                "A1ZAX1-1",
                "protein_xref_panther",
                "PTHR13937",
                "EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED"
            ],
            [
                "P17336-1",
                "protein_xref_panther",
                "PTHR11465",
                "CATALASE"
            ],
            [
                "A0A0B4KFC9-1",
                "protein_xref_panther",
                "PTHR12147",
                "METALLOPEPTIDASE M28 FAMILY MEMBER"
            ],
            [
                "P56079-1",
                "protein_xref_panther",
                "PTHR13773",
                "PHOSPHATIDATE CYTIDYLYLTRANSFERASE"
            ],
            [
                "Q9VWS0-1",
                "protein_xref_panther",
                "PTHR10333:SF99",
                "INHIBITOR OF GROWTH PROTEIN 3"
            ],
            [
                "Q9VWS0-1",
                "protein_xref_panther",
                "PTHR10333",
                "INHIBITOR OF GROWTH PROTEIN"
            ],
            [
                "Q9VWS2-1",
                "protein_xref_panther",
                "PTHR21527",
                "NUCLEOPORIN NUP35"
            ],
            [
                "Q9VWS3-1",
                "protein_xref_panther",
                "PTHR15746",
                "RAB11-RELATED"
            ],
            [
                "G4LU05-1",
                "protein_xref_panther",
                "PTHR45645:SF22",
                "NEUROPILIN AND TOLLOID-LIKE PROTEIN 2"
            ],
            [
                "Q8SYY6-1",
                "protein_xref_panther",
                "PTHR15601",
                "STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4"
            ],
            [
                "Q9Y137-1",
                "protein_xref_panther",
                "PTHR12563",
                "GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE"
            ],
            [
                "P48554-1",
                "protein_xref_panther",
                "PTHR24072",
                "RHO FAMILY GTPASE"
            ],
            [
                "P48555-1",
                "protein_xref_panther",
                "PTHR24070",
                "RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY"
            ],
            [
                "A0A0B4JDC9-1",
                "protein_xref_panther",
                "PTHR14234",
                "RIM BINDING PROTEIN-RELATED"
            ],
            [
                "Q9W277-1",
                "protein_xref_panther",
                "PTHR11099",
                "VACUOLAR SORTING PROTEIN 35"
            ],
            [
                "Q9VGU5-1",
                "protein_xref_panther",
                "PTHR23184",
                "TETRATRICOPEPTIDE REPEAT PROTEIN 14"
            ],
            [
                "Q9VUR3-1",
                "protein_xref_panther",
                "PTHR13438",
                "AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN"
            ],
            [
                "Q9V969-1",
                "protein_xref_panther",
                "PTHR21143",
                "INVERTEBRATE GUSTATORY RECEPTOR"
            ],
            [
                "Q9V968-1",
                "protein_xref_panther",
                "PTHR12377",
                "UNCHARACTERIZED"
            ],
            [
                "Q9VUR2-1",
                "protein_xref_panther",
                "PTHR14150",
                "U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14"
            ],
            [
                "P11996-1",
                "protein_xref_panther",
                "PTHR11511",
                "LARVAL STORAGE PROTEIN/PHENOLOXIDASE"
            ],
            [
                "P11997-1",
                "protein_xref_panther",
                "PTHR11511",
                "LARVAL STORAGE PROTEIN/PHENOLOXIDASE"
            ],
            [
                "P11995-1",
                "protein_xref_panther",
                "PTHR11511",
                "LARVAL STORAGE PROTEIN/PHENOLOXIDASE"
            ],
            [
                "A1Z8T6-1",
                "protein_xref_panther",
                "PTHR21439",
                "OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "A1Z8T9-1",
                "protein_xref_panther",
                "PTHR11886",
                "DYNEIN LIGHT CHAIN"
            ],
            [
                "A1ZAI5-1",
                "protein_xref_panther",
                "PTHR11011",
                "MALE STERILITY PROTEIN 2-RELATED"
            ],
            [
                "A1ZAI1-1",
                "protein_xref_panther",
                "PTHR13205",
                "TRANSMEMBRANE PROTEIN 15-RELATED"
            ],
            [
                "A1ZAI1-1",
                "protein_xref_panther",
                "PTHR13205:SF15",
                "DOLICHOL KINASE"
            ],
            [
                "A1ZAI3-1",
                "protein_xref_panther",
                "PTHR11011",
                "MALE STERILITY PROTEIN 2-RELATED"
            ],
            [
                "Q8IR55-1",
                "protein_xref_panther",
                "PTHR18902:SF26",
                "GOLGIN SUBFAMILY A MEMBER 3"
            ],
            [
                "O61492-1",
                "protein_xref_panther",
                "PTHR13806",
                "FLOTILLIN-RELATED"
            ],
            [
                "Q9VXY2-1",
                "protein_xref_panther",
                "PTHR13008",
                "MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS"
            ],
            [
                "P07487-1",
                "protein_xref_panther",
                "PTHR10836",
                "GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE"
            ],
            [
                "P27619-1",
                "protein_xref_panther",
                "PTHR11566",
                "DYNAMIN"
            ],
            [
                "P27619-1",
                "protein_xref_panther",
                "PTHR11566:SF32",
                "DYNAMIN-1"
            ],
            [
                "Q01583-4",
                "protein_xref_panther",
                "PTHR11255",
                "DIACYLGLYCEROL KINASE"
            ],
            [
                "M9PDV2-1",
                "protein_xref_panther",
                "PTHR19282",
                "TETRASPANIN"
            ],
            [
                "Q9W0E3-1",
                "protein_xref_panther",
                "PTHR13179",
                "DEP DOMAIN CONTAINING PROTEIN 5"
            ],
            [
                "A0A0C4DHA5-1",
                "protein_xref_panther",
                "PTHR12507",
                "REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED"
            ],
            [
                "A1Z9R1-1",
                "protein_xref_panther",
                "PTHR22792",
                "LUPUS LA PROTEIN-RELATED"
            ],
            [
                "Q9V727-1",
                "protein_xref_panther",
                "PTHR13578",
                "ADDITIONAL SEX COMBS LIKE PROTEIN ASXL"
            ],
            [
                "Q9V727-1",
                "protein_xref_panther",
                "PTHR13578:SF20",
                "POLYCOMB PROTEIN ASX"
            ],
            [
                "Q9VTC2-1",
                "protein_xref_panther",
                "PTHR16230",
                "CAPPUCCINO"
            ],
            [
                "A0A0B4K6N4-1",
                "protein_xref_panther",
                "PTHR10901",
                "TROPOMODULIN"
            ],
            [
                "A0A0B4K6N4-1",
                "protein_xref_panther",
                "PTHR10901:SF6",
                "TROPOMODULIN, ISOFORM N"
            ],
            [
                "Q04499-1",
                "protein_xref_panther",
                "PTHR13914",
                "PROLINE OXIDASE"
            ],
            [
                "Q9VST7-1",
                "protein_xref_panther",
                "PTHR20933",
                "F-BOX ONLY PROTEIN 33"
            ],
            [
                "Q24173-1",
                "protein_xref_panther",
                "PTHR11774",
                "GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT"
            ],
            [
                "Q9VKQ9-1",
                "protein_xref_panther",
                "PTHR23356",
                "DPY30-RELATED"
            ],
            [
                "Q9VKQ5-1",
                "protein_xref_panther",
                "PTHR16188",
                "PROTEIN PHOSPHATASE 1 INHIBITOR POTENTIATED BY PROTEIN KINASE C"
            ],
            [
                "A0A0B4K7J3-1",
                "protein_xref_panther",
                "PTHR23255",
                "TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II"
            ],
            [
                "A1ZBY3-1",
                "protein_xref_panther",
                "PTHR23279",
                "DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED"
            ],
            [
                "Q7KUN6-1",
                "protein_xref_panther",
                "PTHR20934",
                "UNCHARACTERIZED"
            ],
            [
                "A0A0B4KFS5-1",
                "protein_xref_panther",
                "PTHR12366",
                "ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE"
            ],
            [
                "B7YZL3-1",
                "protein_xref_panther",
                "PTHR21119",
                "UNCHARACTERIZED"
            ],
            [
                "Q9VE04-1",
                "protein_xref_panther",
                "PTHR34095",
                "39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL"
            ],
            [
                "A0A0B4K8B1-1",
                "protein_xref_panther",
                "PTHR11610",
                "LIPASE"
            ],
            [
                "Q9W1G4-1",
                "protein_xref_panther",
                "PTHR19863",
                "NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG"
            ],
            [
                "Q9W1G7-1",
                "protein_xref_panther",
                "PTHR11875",
                "TESTIS-SPECIFIC Y-ENCODED PROTEIN"
            ],
            [
                "A0A0B4LGD3-1",
                "protein_xref_panther",
                "PTHR11827:SF66",
                "SOLUTE CARRIER FAMILY 12 MEMBER 6"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly UniProtKB Xref PANTHER\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2022-08-31T13:34:27.210052\n\nModified on\n   - 2022-09-26T09:08:12.543006\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly UniProtKB Xref PANTHER contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers.  If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_panther.csv\n      Name: fruitfly_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"5097\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"3143\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"2903\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_panther.csv"
}