{ "bcoid": "GLY_000662", "title": "Fruitfly UniProtKB Xref NCBI Gene", "description": "The Fruitfly UniProtKB Xref NCBI Gene dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions ...", "filename": "fruitfly_protein_xref_geneid.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "Ncbi Gene cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "M9PJ12-1...", "protein_xref..." ], [ "P34082-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "M9PJ12-1", "protein_xref_geneid", "31353", "" ], [ "P34082-1", "protein_xref_geneid", "31364", "" ], [ "P40796-1", "protein_xref_geneid", "35305", "" ], [ "P40797-1", "protein_xref_geneid", "35801", "" ], [ "P40794-1", "protein_xref_geneid", "43687", "" ], [ "P40795-1", "protein_xref_geneid", "33148", "" ], [ "P40792-1", "protein_xref_geneid", "38146", "" ], [ "P40793-1", "protein_xref_geneid", "32981", "" ], [ "P40791-1", "protein_xref_geneid", "36032", "" ], [ "P40798-1", "protein_xref_geneid", "34888", "" ], [ "P40421-1", "protein_xref_geneid", "40224", "" ], [ "P40423-1", "protein_xref_geneid", "31554", "" ], [ "P40427-1", "protein_xref_geneid", "32567", "" ], [ "A8JRH2-1", "protein_xref_geneid", "5740334", "" ], [ "A2VEV2-1", "protein_xref_geneid", "5740207", "" ], [ "A2VEV0-1", "protein_xref_geneid", "5740537", "" ], [ "P08841-1", "protein_xref_geneid", "37888", "" ], [ "Q9VE87-1", "protein_xref_geneid", "42207", "" ], [ "Q9VE86-1", "protein_xref_geneid", "42208", "" ], [ "Q9VE85-1", "protein_xref_geneid", "42209", "" ], [ "P05389-1", "protein_xref_geneid", "36855", "" ], [ "Q9VK71-1", "protein_xref_geneid", "34673", "" ], [ "Q9V776-1", "protein_xref_geneid", "36667", "" ], [ "Q9VRR2-1", "protein_xref_geneid", "38666", "" ], [ "Q9VRR3-1", "protein_xref_geneid", "38667", "" ], [ "Q9VRR0-1", "protein_xref_geneid", "38664", "" ], [ "M9PEG2-1", "protein_xref_geneid", "38665", "" ], [ "M9PBR6-1", "protein_xref_geneid", "38668", "" ], [ "Q8SX44-1", "protein_xref_geneid", "40252", "" ], [ "M9PEA4-1", "protein_xref_geneid", "38674", "" ], [ "P04388-1", "protein_xref_geneid", "38494", "" ], [ "A1ZB47-1", "protein_xref_geneid", "37088", "" ], [ "A1ZB42-1", "protein_xref_geneid", "37079", "" ], [ "A1ZB48-1", "protein_xref_geneid", "37087", "" ], [ "A1ZB49-1", "protein_xref_geneid", "246465", "" ], [ "Q9VYT1-1", "protein_xref_geneid", "32145", "" ], [ "Q9VLI9-1", "protein_xref_geneid", "34197", "" ], [ "Q9VLI1-1", "protein_xref_geneid", "34204", "" ], [ "Q9VLI0-1", "protein_xref_geneid", "34205", "" ], [ "Q9VLI3-1", "protein_xref_geneid", "34202", "" ], [ "Q9VLI2-1", "protein_xref_geneid", "34203", "" ], [ "Q9VLI4-1", "protein_xref_geneid", "44851", "" ], [ "Q9VLI4-1", "protein_xref_geneid", "44851", "" ], [ "Q9VLI6-1", "protein_xref_geneid", "34198", "" ], [ "Q95RA8-1", "protein_xref_geneid", "42634", "" ], [ "Q27869-1", "protein_xref_geneid", "40668", "" ], [ "E1JJ52-1", "protein_xref_geneid", "40704", "" ], [ "A0A0B4KHI4-1", "protein_xref_geneid", "42460", "" ], [ "A0A0B4KG03-1", "protein_xref_geneid", "41677", "" ], [ "A0A0B4KHI4-1", "protein_xref_geneid", "42460", "" ], [ "Q02870-1", "protein_xref_geneid", "39202", "" ], [ "E1JH39-1", "protein_xref_geneid", "36272", "" ], [ "Q7JUM3-1", "protein_xref_geneid", "37020", "" ], [ "Q8SXV2-1", "protein_xref_geneid", "318879", "" ], [ "M9PB30-1", "protein_xref_geneid", "318824", "" ], [ "M9PB30-1", "protein_xref_geneid", "318824", "" ], [ "M9PB30-1", "protein_xref_geneid", "318824", "" ], [ "M9PEM2-1", "protein_xref_geneid", "318872", "" ], [ "Q8SXV4-1", "protein_xref_geneid", "34469", "" ], [ "Q95R34-1", "protein_xref_geneid", "31209", "" ], [ "Q8SXV9-1", "protein_xref_geneid", "32710", "" ], [ "Q95R35-1", "protein_xref_geneid", "326188", "" ], [ "Q9VME8-1", "protein_xref_geneid", "33887", "" ], [ "Q9VME9-1", "protein_xref_geneid", "33886", "" ], [ "Q9VME0-1", "protein_xref_geneid", "33895", "" ], [ "Q9VME1-1", "protein_xref_geneid", "33894", "" ], [ "Q9VME2-1", "protein_xref_geneid", "33893", "" ], [ "Q9VME3-1", "protein_xref_geneid", "33892", "" ], [ "Q9VVS1-1", "protein_xref_geneid", "40039", "" ], [ "Q9VME5-1", "protein_xref_geneid", "33890", "" ], [ "Q9VVS3-1", "protein_xref_geneid", "40041", "" ], [ "Q9VVS2-1", "protein_xref_geneid", "40040", "" ], [ "Q9VZZ6-1", "protein_xref_geneid", "38323", "" ], [ "A1ZAX1-1", "protein_xref_geneid", "37005", "" ], [ "A0A0B4KFC0-1", "protein_xref_geneid", "36171", "" ], [ "A0A0B4KFC4-1", "protein_xref_geneid", "44855", "" ], [ "Q86S05-1", "protein_xref_geneid", "35771", "" ], [ "P17336-1", "protein_xref_geneid", "40048", "" ], [ "A0A0B4KFC9-1", "protein_xref_geneid", "37225", "" ], [ "A8JQT5-1", "protein_xref_geneid", "40608", "" ], [ "P56079-1", "protein_xref_geneid", "43950", "" ], [ "Q9I7P2-1", "protein_xref_geneid", "33822", "" ], [ "Q9W0I6-1", "protein_xref_geneid", "38137", "" ], [ "Q7KN74-1", "protein_xref_geneid", "48387", "" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref NCBI Gene\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-08-31T13:07:41.419400\n\nModified on\n - 2022-09-26T09:08:12.444004\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref NCBI Gene dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to NCBI Gene database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.\n\nDescription Domain\n Keywords\n - gene id\n - NCBI gene\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI Gene database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_geneid.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_geneid.csv\n Name: fruitfly_protein_xref_geneid.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_geneid.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13750\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13895\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_geneid.csv" }