{ "bcoid": "GLY_000659", "title": "Fruitfly UniProtKB Xref CAZy", "description": "The Fruitfly UniprotKB Xref CAZy contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "Cazy", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9VLI1-1...", "protein_xref..." ], [ "Q9VLI0-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9VLI1-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q9VLI0-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q9VLI2-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q7JUM3-1", "protein_xref_cazy", "GT4", "Glycosyltransferase Family 4" ], [ "Q9VAP8-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "A1ZB32-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VI81-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VI80-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VEE9-1", "protein_xref_cazy", "GT33", "Glycosyltransferase Family 33" ], [ "Q9VYH2-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q9VSU2-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VLA1-1", "protein_xref_cazy", "GT43", "Glycosyltransferase Family 43" ], [ "Q8IA42-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q8IA42-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "M9NDS9-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "M9NDS9-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q8MLW8-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q9VGB2-1", "protein_xref_cazy", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "Q9VZU8-1", "protein_xref_cazy", "GT4", "Glycosyltransferase Family 4" ], [ "Q7K127-1", "protein_xref_cazy", "GH27", "Glycoside Hydrolase Family 27" ], [ "Q9VKD9-1", "protein_xref_cazy", "GH65", "Glycoside Hydrolase Family 65" ], [ "A1ZA23-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VXN0-1", "protein_xref_cazy", "GT4", "Glycosyltransferase Family 4" ], [ "Q9VQ68-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9V6X7-1", "protein_xref_cazy", "GT65", "Glycosyltransferase Family 65" ], [ "Q08694-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q9VQT0-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "A8JUX3-1", "protein_xref_cazy", "CBM47", "Carbohydrate-Binding Module Family 47" ], [ "Q8MVS5-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q8MVS5-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "P29615-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "P37159-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q9V7W1-1", "protein_xref_cazy", "GT76", "Glycosyltransferase Family 76" ], [ "Q9VNL0-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VCL3-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VCL5-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VCL4-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q8MM24-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "A1ZAL1-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q8IMS9-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9W2J4-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "A0A0B4LFW5-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q9W2J3-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VCS0-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VWM1-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q9V9T9-1", "protein_xref_cazy", "GH2", "Glycoside Hydrolase Family 2" ], [ "A1Z7Q8-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "Q9W589-1", "protein_xref_cazy", "GT68", "Glycosyltransferase Family 68" ], [ "M9PGK1-1", "protein_xref_cazy", "GT92", "Glycosyltransferase Family 92" ], [ "Q9VBL5-1", "protein_xref_cazy", "GT32", "Glycosyltransferase Family 32" ], [ "Q9VW94-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "A0A0B4KGE4-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q9VW34-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "E1JI40-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q8IMK0-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "Q9VJ46-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q8SXL5-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VZV2-1", "protein_xref_cazy", "CBM14", "Carbohydrate-Binding Module Family 14" ], [ "Q9VZV2-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q9VJ47-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q8IPN4-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q9VL27-1", "protein_xref_cazy", "GH27", "Glycoside Hydrolase Family 27" ], [ "Q9W092-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q9GU23-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9VDC9-1", "protein_xref_cazy", "GH84", "Glycoside Hydrolase Family 84" ], [ "P08144-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q27333-1", "protein_xref_cazy", "GT58", "Glycosyltransferase Family 58" ], [ "Q9VQB7-1", "protein_xref_cazy", "GT61", "Glycosyltransferase Family 61" ], [ "Q9VGT8-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT5-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT4-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT1-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT0-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT3-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VGT2-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9VUL9-1", "protein_xref_cazy", "GT10", "Glycosyltransferase Family 10" ], [ "Q7K237-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q23997-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q9VLS8-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q7K237-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q9VVY3-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "Q8IA43-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q8IA43-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q8IA41-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref CAZy\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-08-31T12:46:03.864774\n\nModified on\n - 2022-09-26T09:08:12.533507\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniprotKB Xref CAZy contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - CAZy is a database of Carbohydrate-Active enZYmes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates.\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_cazy.csv\n Name: fruitfly_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"303\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"73\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"73\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_cazy.csv" }