{
    "bcoid": "GLY_000657",
    "title": "Fruitfly UniProtKB Xref Bgee",
    "description": "The Fruitfly UniProtKB Xref Bgee dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions ...",
    "filename": "fruitfly_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": "Drosophila melanogaster",
        "molecule": "Protein",
        "tags": "Bgee",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "M9PJ12-1...",
                "protein_xref..."
            ],
            [
                "P34082-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "M9PJ12-1",
                "protein_xref_bgee",
                "FBgn0263772",
                "Expressed in brain and 7 other tissues"
            ],
            [
                "P34082-1",
                "protein_xref_bgee",
                "FBgn0000635",
                "Expressed in eye disc (Drosophila) and 28 other tissues"
            ],
            [
                "P40796-1",
                "protein_xref_bgee",
                "FBgn0011638",
                "Expressed in adult abdomen and 74 other tissues"
            ],
            [
                "P40797-1",
                "protein_xref_bgee",
                "FBgn0013726",
                "Expressed in wing disc and 25 other tissues"
            ],
            [
                "P40794-1",
                "protein_xref_bgee",
                "FBgn0004389",
                "Expressed in seminal fluid secreting gland and 1 other tissue"
            ],
            [
                "P40795-1",
                "protein_xref_bgee",
                "FBgn0000719",
                "Expressed in embryonic/larval hemocyte (Drosophila) and 32 other tissues"
            ],
            [
                "P40792-1",
                "protein_xref_bgee",
                "FBgn0010333",
                "Expressed in wing disc and 25 other tissues"
            ],
            [
                "P40793-1",
                "protein_xref_bgee",
                "FBgn0010341",
                "Expressed in seminal fluid secreting gland and 42 other tissues"
            ],
            [
                "P40791-1",
                "protein_xref_bgee",
                "FBgn0011656",
                "Expressed in spermathecum and 54 other tissues"
            ],
            [
                "P40798-1",
                "protein_xref_bgee",
                "FBgn0001978",
                "Expressed in egg chamber and 27 other tissues"
            ],
            [
                "P40421-1",
                "protein_xref_bgee",
                "FBgn0265959",
                "Expressed in brain and 12 other tissues"
            ],
            [
                "P40423-1",
                "protein_xref_bgee",
                "FBgn0003514",
                "Expressed in saliva-secreting gland and 24 other tissues"
            ],
            [
                "P40427-1",
                "protein_xref_bgee",
                "FBgn0000611",
                "Expressed in wing disc and 81 other tissues"
            ],
            [
                "A8JRH2-1",
                "protein_xref_bgee",
                "FBgn0085329",
                "Expressed in testis and 9 other tissues"
            ],
            [
                "A2VEV2-1",
                "protein_xref_bgee",
                "FBgn0085352",
                "Expressed in testis and 3 other tissues"
            ],
            [
                "A2VEV0-1",
                "protein_xref_bgee",
                "FBgn0085331",
                "Expressed in testis and 4 other tissues"
            ],
            [
                "P08841-1",
                "protein_xref_bgee",
                "FBgn0003888",
                "Expressed in embryonic/larval hemocyte (Drosophila) and 53 other tissues"
            ],
            [
                "Q9VE87-1",
                "protein_xref_bgee",
                "FBgn0038607",
                "Expressed in testis and 11 other tissues"
            ],
            [
                "Q9VE86-1",
                "protein_xref_bgee",
                "FBgn0038608",
                "Expressed in secondary oocyte and 30 other tissues"
            ],
            [
                "Q9VE85-1",
                "protein_xref_bgee",
                "FBgn0038609",
                "Expressed in secondary oocyte and 23 other tissues"
            ],
            [
                "P05389-1",
                "protein_xref_bgee",
                "FBgn0003274",
                "Expressed in mouthpart and 23 other tissues"
            ],
            [
                "A0A6H2EE55-1",
                "protein_xref_bgee",
                "FBgn0029922",
                "Expressed in adult Malpighian tubule (Drosophila) and 11 other tissues"
            ],
            [
                "A0A6F7UCJ3-1",
                "protein_xref_bgee",
                "FBgn0262353",
                "Expressed in midgut and 13 other tissues"
            ],
            [
                "Q9VK71-1",
                "protein_xref_bgee",
                "FBgn0004394",
                "Expressed in presumptive embryonic/larval nervous system and 99 other tissues"
            ],
            [
                "Q9V776-1",
                "protein_xref_bgee",
                "FBgn0033982",
                "Expressed in adult Malpighian tubule (Drosophila) and 17 other tissues"
            ],
            [
                "Q9VRR2-1",
                "protein_xref_bgee",
                "FBgn0035649",
                "Expressed in oviduct (Drosophila) and 11 other tissues"
            ],
            [
                "Q9VRR3-1",
                "protein_xref_bgee",
                "FBgn0052407",
                "Expressed in midgut and 19 other tissues"
            ],
            [
                "Q9VRR0-1",
                "protein_xref_bgee",
                "FBgn0035647",
                "Expressed in testis and 2 other tissues"
            ],
            [
                "M9PEG2-1",
                "protein_xref_bgee",
                "FBgn0035648",
                "Expressed in eye disc (Drosophila) and 5 other tissues"
            ],
            [
                "M9PBR6-1",
                "protein_xref_bgee",
                "FBgn0053523",
                "Expressed in crop (Drosophila) and 24 other tissues"
            ],
            [
                "Q8SX44-1",
                "protein_xref_bgee",
                "FBgn0053969",
                "Expressed in mouthpart and 21 other tissues"
            ],
            [
                "M9PEA4-1",
                "protein_xref_bgee",
                "FBgn0035656",
                "Expressed in anlage and 77 other tissues"
            ],
            [
                "P04388-1",
                "protein_xref_bgee",
                "FBgn0003206",
                "Expressed in crop (Drosophila) and 28 other tissues"
            ],
            [
                "A1ZB47-1",
                "protein_xref_bgee",
                "FBgn0053958",
                "Expressed in ring gland and 1 other tissue"
            ],
            [
                "A1ZB42-1",
                "protein_xref_bgee",
                "FBgn0260401",
                "Expressed in saliva-secreting gland and 12 other tissues"
            ],
            [
                "A1ZB48-1",
                "protein_xref_bgee",
                "FBgn0034318",
                "Expressed in adult midgut (Drosophila) and 15 other tissues"
            ],
            [
                "A1ZB49-1",
                "protein_xref_bgee",
                "FBgn0050114",
                "Expressed in testis"
            ],
            [
                "Q9VYT1-1",
                "protein_xref_bgee",
                "FBgn0030346",
                "Expressed in secondary oocyte and 22 other tissues"
            ],
            [
                "Q9VLI9-1",
                "protein_xref_bgee",
                "FBgn0260861",
                "Expressed in mouthpart and 27 other tissues"
            ],
            [
                "Q9VLI1-1",
                "protein_xref_bgee",
                "FBgn0032067",
                "Expressed in adult midgut (Drosophila) and 4 other tissues"
            ],
            [
                "Q9VLI0-1",
                "protein_xref_bgee",
                "FBgn0032068",
                "Expressed in adult midgut (Drosophila) and 18 other tissues"
            ],
            [
                "Q9VLI3-1",
                "protein_xref_bgee",
                "FBgn0032065",
                "Expressed in testis and 7 other tissues"
            ],
            [
                "Q9VLI2-1",
                "protein_xref_bgee",
                "FBgn0032066",
                "Expressed in adult midgut (Drosophila) and 13 other tissues"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_bgee",
                "FBgn0003209",
                "Expressed in oviduct (Drosophila) and 19 other tissues"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_bgee",
                "FBgn0003209",
                "Expressed in oviduct (Drosophila) and 19 other tissues"
            ],
            [
                "Q9VLI6-1",
                "protein_xref_bgee",
                "FBgn0032061",
                "Expressed in testis and 11 other tissues"
            ],
            [
                "Q95RA8-1",
                "protein_xref_bgee",
                "FBgn0038965",
                "Expressed in saliva-secreting gland and 26 other tissues"
            ],
            [
                "Q27869-1",
                "protein_xref_bgee",
                "FBgn0086768",
                "Expressed in eye disc (Drosophila) and 22 other tissues"
            ],
            [
                "E1JJ52-1",
                "protein_xref_bgee",
                "FBgn0261261",
                "Expressed in second segment of antenna (Drosophila) and 25 other tissues"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_bgee",
                "FBgn0038826",
                "Expressed in imaginal disc and 28 other tissues"
            ],
            [
                "A0A0B4KG03-1",
                "protein_xref_bgee",
                "FBgn0028487",
                "Expressed in testis and 41 other tissues"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_bgee",
                "FBgn0038826",
                "Expressed in imaginal disc and 28 other tissues"
            ],
            [
                "Q02870-1",
                "protein_xref_bgee",
                "FBgn0001179",
                "Expressed in eye disc (Drosophila) and 22 other tissues"
            ],
            [
                "E1JH39-1",
                "protein_xref_bgee",
                "FBgn0260959",
                "Expressed in testis and 26 other tissues"
            ],
            [
                "Q7JUM3-1",
                "protein_xref_bgee",
                "FBgn0034270",
                "Expressed in oocyte and 19 other tissues"
            ],
            [
                "Q8SXV2-1",
                "protein_xref_bgee",
                "FBgn0051675",
                "Expressed in mouthpart and 11 other tissues"
            ],
            [
                "M9PB30-1",
                "protein_xref_bgee",
                "FBgn0053196",
                "Expressed in spermathecum and 30 other tissues"
            ],
            [
                "M9PB30-1",
                "protein_xref_bgee",
                "FBgn0053196",
                "Expressed in spermathecum and 30 other tissues"
            ],
            [
                "M9PB30-1",
                "protein_xref_bgee",
                "FBgn0053196",
                "Expressed in spermathecum and 30 other tissues"
            ],
            [
                "M9PEM2-1",
                "protein_xref_bgee",
                "FBgn0083962",
                "Expressed in seminal fluid secreting gland and 20 other tissues"
            ],
            [
                "Q8SXV4-1",
                "protein_xref_bgee",
                "FBgn0032283",
                "Expressed in mouthpart and 24 other tissues"
            ],
            [
                "Q95R34-1",
                "protein_xref_bgee",
                "FBgn0023525",
                "Expressed in adult hindgut (Drosophila) and 19 other tissues"
            ],
            [
                "Q8SXV9-1",
                "protein_xref_bgee",
                "FBgn0030829",
                "Expressed in capitellum (Drosophila) and 10 other tissues"
            ],
            [
                "Q95R35-1",
                "protein_xref_bgee",
                "FBgn0052064",
                "Expressed in testis and 11 other tissues"
            ],
            [
                "Q9VME8-1",
                "protein_xref_bgee",
                "FBgn0031803",
                "Expressed in open tracheal system trachea and 4 other tissues"
            ],
            [
                "Q9VME9-1",
                "protein_xref_bgee",
                "FBgn0031802",
                "Expressed in tracheal tip cell (Drosophila) and 7 other tissues"
            ],
            [
                "Q9VME0-1",
                "protein_xref_bgee",
                "FBgn0031811",
                "Expressed in brain and 3 other tissues"
            ],
            [
                "Q9VME1-1",
                "protein_xref_bgee",
                "FBgn0259715",
                "Expressed in embryonic/larval hemocyte (Drosophila) and 17 other tissues"
            ],
            [
                "Q9VME2-1",
                "protein_xref_bgee",
                "FBgn0259716",
                "Expressed in arthropod fat body and 12 other tissues"
            ],
            [
                "Q9VME3-1",
                "protein_xref_bgee",
                "FBgn0031808",
                "Expressed in head capsule and 8 other tissues"
            ],
            [
                "Q9VVS1-1",
                "protein_xref_bgee",
                "FBgn0036808",
                "Expressed in testis and 8 other tissues"
            ],
            [
                "Q9VME5-1",
                "protein_xref_bgee",
                "FBgn0043854",
                "Expressed in cleaving embryo and 9 other tissues"
            ],
            [
                "Q9VVS3-1",
                "protein_xref_bgee",
                "FBgn0036810",
                "Expressed in cleaving embryo and 5 other tissues"
            ],
            [
                "Q9VVS2-1",
                "protein_xref_bgee",
                "FBgn0036809",
                "Expressed in testis and 10 other tissues"
            ],
            [
                "Q9VZZ6-1",
                "protein_xref_bgee",
                "FBgn0035355",
                "Expressed in adult midgut (Drosophila) and 25 other tissues"
            ],
            [
                "A1ZAX1-1",
                "protein_xref_bgee",
                "FBgn0034258",
                "Expressed in eye disc (Drosophila) and 29 other tissues"
            ],
            [
                "A0A0B4KFC0-1",
                "protein_xref_bgee",
                "FBgn0003396",
                "Expressed in germ layer and 55 other tissues"
            ],
            [
                "A0A0B4KFC4-1",
                "protein_xref_bgee",
                "FBgn0003254",
                "Expressed in labral sensory complex primordium (Drosophila) and 47 other tissues"
            ],
            [
                "Q86S05-1",
                "protein_xref_bgee",
                "FBgn0020279",
                "Expressed in wing disc and 22 other tissues"
            ],
            [
                "P17336-1",
                "protein_xref_bgee",
                "FBgn0000261",
                "Expressed in adult Malpighian tubule (Drosophila) and 62 other tissues"
            ],
            [
                "A0A0B4KFC9-1",
                "protein_xref_bgee",
                "FBgn0034440",
                "Expressed in larva and 8 other tissues"
            ],
            [
                "A8JQT5-1",
                "protein_xref_bgee",
                "FBgn0265082",
                "Expressed in adult midgut (Drosophila) and 36 other tissues"
            ],
            [
                "P56079-1",
                "protein_xref_bgee",
                "FBgn0010350",
                "Expressed in head capsule and 26 other tissues"
            ],
            [
                "Q9I7P2-1",
                "protein_xref_bgee",
                "FBgn0031751",
                "Expressed in testis and 15 other tissues"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly UniProtKB Xref Bgee\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2022-08-31T12:38:17.932566\n\nModified on\n   - 2022-09-26T09:08:12.750012\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly UniProtKB Xref Bgee dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers.  If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n   - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_xref_bgee.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_bgee.csv\n      Name: fruitfly_protein_xref_bgee.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_bgee.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13634\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"13624\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"2461\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_bgee.csv"
}