{ "bcoid": "GLY_000646", "title": "Fruitfly Protein Information (UniProtKB)", "description": "The Fruitfly Protein Information dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions ...", "filename": "fruitfly_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8T452-1...", "Q8T452_DROME..." ], [ "A2RVG5-1...", "A2RVG5_DROME..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q8T452-1", "Q8T452_DROME", "22014", "196" ], [ "A2RVG5-1", "A2RVG5_DROME", "66975", "603" ], [ "Q9VT44-1", "Q9VT44_DROME", "62331", "552" ], [ "Q9W3W8-1", "RL17_DROME", "21593", "186" ], [ "Q7KTF1-1", "Q7KTF1_DROME", "57425", "528" ], [ "Q9TVP3-1", "JDP_DROME", "21651", "195" ], [ "Q9VWQ2-1", "S6KL_DROME", "55372", "483" ], [ "Q29QQ9-1", "Q29QQ9_DROME", "32387", "296" ], [ "Q7JV09-1", "Q7JV09_DROME", "115942", "1054" ], [ "Q7KVH9-1", "TFP8L_DROME", "21387", "188" ], [ "P13097-1", "ESM7_DROME", "20687", "186" ], [ "Q9VQ57-1", "DERL1_DROME", "28256", "245" ], [ "A1Z7M0-1", "A1Z7M0_DROME", "26785", "245" ], [ "Q86PD7-1", "Q86PD7_DROME", "40838", "354" ], [ "A1Z877-1", "NDG_DROME", "149081", "1350" ], [ "A1Z8V5-1", "A1Z8V5_DROME", "43103", "360" ], [ "Q94529-1", "GS1_DROME", "25785", "231" ], [ "Q3YMU0-1", "Q3YMU0_DROME", "55371", "489" ], [ "A1ZA38-1", "A1ZA38_DROME", "31373", "281" ], [ "Q9VI93-1", "RN_DROME", "100948", "946" ], [ "Q8IMK1-1", "Q8IMK1_DROME", "121160", "1108" ], [ "Q94913-1", "REG5_DROME", "31601", "288" ], [ "Q9VWF7-1", "Q9VWF7_DROME", "32797", "292" ], [ "Q9VFQ9-1", "Q9VFQ9_DROME", "55534", "508" ], [ "Q9VSZ0-1", "Q9VSZ0_DROME", "20746", "205" ], [ "Q95RQ7-1", "Q95RQ7_DROME", "81985", "707" ], [ "Q9VNY5-1", "Q9VNY5_DROME", "28495", "269" ], [ "Q7JRN6-1", "Q7JRN6_DROME", "24828", "223" ], [ "Q9VYR0-1", "LSM12_DROME", "23746", "217" ], [ "A0A0S0WGX2-1", "A0A0S0WGX2_DROME", "68011", "615" ], [ "Q9VLC5-1", "Q9VLC5_DROME", "57019", "520" ], [ "Q9VNP7-1", "Q9VNP7_DROME", "65986", "604" ], [ "Q9VGM0-1", "Q9VGM0_DROME", "101408", "897" ], [ "Q9VEJ1-1", "Q9VEJ1_DROME", "87374", "787" ], [ "Q23978-1", "MY31D_DROME", "117095", "1011" ], [ "Q9VHN9-1", "HPS5_DROME", "93620", "826" ], [ "Q9VJD4-1", "Q9VJD4_DROME", "36253", "331" ], [ "Q9VL70-1", "Q9VL70_DROME", "41610", "398" ], [ "Q86B83-1", "Q86B83_DROME", "37320", "331" ], [ "Q9VSQ7-1", "Q9VSQ7_DROME", "23974", "229" ], [ "Q9VGD7-1", "Q9VGD7_DROME", "52394", "473" ], [ "Q9VBT3-1", "Q9VBT3_DROME", "49276", "422" ], [ "Q9VAW5-3", "LARP_DROME", "178145", "1673" ], [ "Q7JZE1-1", "Q7JZE1_DROME", "27138", "241" ], [ "Q9V3C5-1", "RIC1_DROME", "159157", "1429" ], [ "Q9VWB4-1", "Q9VWB4_DROME", "40993", "362" ], [ "Q9VNE2-1", "PKRA_DROME", "49225", "422" ], [ "Q9VLR2-1", "Q9VLR2_DROME", "18610", "170" ], [ "Q9VUX2-1", "MIB_DROME", "129872", "1226" ], [ "Q9VMD4-1", "Q9VMD4_DROME", "48654", "433" ], [ "Q9VX32-1", "RG190_DROME", "178772", "1561" ], [ "Q8IND4-1", "Q8IND4_DROME", "26616", "225" ], [ "Q9VGV5-1", "Q9VGV5_DROME", "50292", "444" ], [ "Q7KMI3-1", "Q7KMI3_DROME", "113769", "1004" ], [ "Q9VB43-1", "Q9VB43_DROME", "32171", "288" ], [ "Q9VGX7-1", "Q9VGX7_DROME", "57957", "522" ], [ "O01939-1", "MST_DROME", "64783", "574" ], [ "O46089-1", "MMS22_DROME", "125413", "1102" ], [ "Q8T983-1", "Q8T983_DROME", "8990", "80" ], [ "P10090-1", "WHITE_DROME", "75673", "687" ], [ "M9PCZ7-1", "M9PCZ7_DROME", "81614", "761" ], [ "O46043-1", "PARG_DROME", "81109", "723" ], [ "Q0E8R1-1", "Q0E8R1_DROME", "48598", "431" ], [ "Q9W4J4-1", "Q9W4J4_DROME", "22877", "215" ], [ "Q9GU23-1", "Q9GU23_DROME", "53880", "474" ], [ "Q9W0A9-1", "Q9W0A9_DROME", "33733", "294" ], [ "A1Z6S4-1", "A1Z6S4_DROME", "52484", "451" ], [ "Q8I7Z8-1", "HAM_DROME", "109228", "990" ], [ "Q9VC60-1", "Q9VC60_DROME", "76498", "647" ], [ "M9PHQ2-1", "M9PHQ2_DROME", "136171", "1269" ], [ "Q9W3M6-1", "Q9W3M6_DROME", "35233", "300" ], [ "Q9VXV2-1", "Q9VXV2_DROME", "58658", "526" ], [ "Q9VRK8-1", "PLBL_DROME", "74874", "658" ], [ "Q8T3R9-1", "Q8T3R9_DROME", "31822", "281" ], [ "Q86BS3-1", "Q86BS3_DROME", "101053", "926" ], [ "P18824-1", "ARM_DROME", "91153", "843" ], [ "M9PFZ1-1", "M9PFZ1_DROME", "78192", "773" ], [ "Q9V9Z3-1", "Q9V9Z3_DROME", "48973", "436" ], [ "Q9VV73-1", "NXF2_DROME", "96635", "841" ], [ "Q9VWP7-1", "Q9VWP7_DROME", "40234", "352" ], [ "Q9VZX8-1", "Q9VZX8_DROME", "42530", "380" ], [ "O96690-1", "PDF_DROME", "11545", "102" ], [ "Q9VBI0-1", "Q9VBI0_DROME", "22466", "195" ], [ "E1JJF2-1", "E1JJF2_DROME", "44985", "385" ] ] }, "readme": "Name\n - Fruitfly Protein Information (UniProtKB)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-08-30T16:19:56.970676\n\nModified on\n - 2022-09-26T09:08:12.657372\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Information dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_info_uniprotkb.csv\n Name: fruitfly_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13821\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"13821\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"12951\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"1895\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_info_uniprotkb.csv" }