{ "bcoid": "GLY_000643", "title": "Fruitfly N-Glycosylation Sequon", "description": "The Fruitfly N-Glycosylation Sequon dataset contains N-glycosylation sequon or motif or consensus sequence ...", "filename": "fruitfly_protein_glycosylation_motifs.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "N-Glycosylation Sequon", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "M9PJ12-1...", "20..." ], [ "M9PJ12-1...", "62..." ] ], "headers": [ "uniprotkb_ca...", "start_pos..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "motif" } ], [ "M9PJ12-1", "20", "22", "NHT" ], [ "M9PJ12-1", "62", "64", "NNS" ], [ "M9PJ12-1", "179", "181", "NST" ], [ "M9PJ12-1", "490", "492", "NNS" ], [ "M9PJ12-1", "497", "499", "NNS" ], [ "M9PJ12-1", "498", "500", "NSS" ], [ "M9PJ12-1", "526", "528", "NKS" ], [ "M9PJ12-1", "846", "848", "NLS" ], [ "M9PJ12-1", "908", "910", "NVS" ], [ "M9PJ12-1", "947", "949", "NGS" ], [ "M9PJ12-1", "1181", "1183", "NYS" ], [ "M9PJ12-1", "1339", "1341", "NNS" ], [ "M9PJ12-1", "1363", "1365", "NGS" ], [ "M9PJ12-1", "1459", "1461", "NNS" ], [ "M9PJ12-1", "1460", "1462", "NSS" ], [ "M9PJ12-1", "1474", "1476", "NHS" ], [ "P34082-1", "74", "76", "NNT" ], [ "P34082-1", "250", "252", "NCT" ], [ "P34082-1", "330", "332", "NVT" ], [ "P34082-1", "448", "450", "NLS" ], [ "P34082-1", "458", "460", "NAT" ], [ "P34082-1", "576", "578", "NRS" ], [ "P34082-1", "849", "851", "NST" ], [ "P40796-1", "111", "113", "NKS" ], [ "P40796-1", "177", "179", "NLT" ], [ "P40797-1", "45", "47", "NGS" ], [ "P40797-1", "199", "201", "NLT" ], [ "P40797-1", "371", "373", "NLT" ], [ "P40797-1", "521", "523", "NSS" ], [ "P40794-1", "191", "193", "NSS" ], [ "P40795-1", "51", "53", "NLT" ], [ "P40795-1", "105", "107", "NGS" ], [ "P40795-1", "193", "195", "NIS" ], [ "P40795-1", "252", "254", "NTT" ], [ "P40795-1", "289", "291", "NDS" ], [ "P40795-1", "459", "461", "NSS" ], [ "P40795-1", "590", "592", "NWS" ], [ "P40795-1", "639", "641", "NRS" ], [ "P40795-1", "678", "680", "NSS" ], [ "P40792-1", "39", "41", "NYS" ], [ "P40793-1", "123", "125", "NST" ], [ "P40791-1", "144", "146", "NSS" ], [ "P40791-1", "174", "176", "NIS" ], [ "P40791-1", "260", "262", "NMS" ], [ "P40791-1", "337", "339", "NST" ], [ "P40791-1", "372", "374", "NGS" ], [ "P40791-1", "387", "389", "NAS" ], [ "P40791-1", "409", "411", "NVS" ], [ "P40791-1", "438", "440", "NLS" ], [ "P40798-1", "19", "21", "NES" ], [ "P40798-1", "67", "69", "NAT" ], [ "P40798-1", "82", "84", "NFS" ], [ "P40798-1", "108", "110", "NVS" ], [ "P40798-1", "149", "151", "NFS" ], [ "P40798-1", "197", "199", "NST" ], [ "P40798-1", "207", "209", "NET" ], [ "P40798-1", "337", "339", "NES" ], [ "P40798-1", "728", "730", "NRT" ], [ "P40798-1", "831", "833", "NFS" ], [ "P40798-1", "910", "912", "NRS" ], [ "P40798-1", "954", "956", "NKT" ], [ "P40421-1", "141", "143", "NIS" ], [ "P40421-1", "472", "474", "NVT" ], [ "P40421-1", "499", "501", "NRT" ], [ "P40423-1", "84", "86", "NFT" ], [ "P40427-1", "244", "246", "NFS" ], [ "A0A0B4LIC4-1", "491", "493", "NMS" ], [ "A0A0B4LIC4-1", "533", "535", "NDT" ], [ "A0A0B4LIC4-1", "692", "694", "NTS" ], [ "A0A0B4LIC4-1", "759", "761", "NVS" ], [ "P08841-1", "190", "192", "NAT" ], [ "P08841-1", "343", "345", "NSS" ], [ "P08841-1", "376", "378", "NTT" ], [ "Q9VE87-1", "244", "246", "NSS" ], [ "Q9VE87-1", "299", "301", "NQT" ], [ "Q9VE87-1", "494", "496", "NVS" ], [ "Q9VE85-1", "5", "7", "NVS" ], [ "Q9VE85-1", "251", "253", "NLS" ], [ "A0A6H2EE55-1", "295", "297", "NLS" ], [ "A0A6H2EE55-1", "559", "561", "NSS" ], [ "A0A6H2EE55-1", "718", "720", "NMT" ], [ "A0A6H2EE55-1", "927", "929", "NSS" ], [ "A0A6H2EE55-1", "1126", "1128", "NST" ], [ "A0A6H2EE55-1", "1130", "1132", "NTT" ] ] }, "readme": "Name\n - Fruitfly N-Glycosylation Sequon\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-08-30T16:10:07.494670\n\nModified on\n - 2022-09-26T09:08:12.486880\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly N-Glycosylation Sequon dataset contains N-glycosylation sequon or motif or consensus sequence for fruitfly [taxid:7227] UniProtKB canonical sequences identified by the script. The script identifies the N-glycosylation sequon pattern - Asn-X-Ser/Thr , where X is any amino acid except proline (Pro) for UniProtKB accessions. \n\nDescription Domain\n Keywords\n - n-glycosylation sequon\n - NXS/T\n - n-glycosylation motif\n - n-glycosylation consensus sequence\n\n Pipeline Steps\n - Step-1: The script uses the PS Scan tool (accession- PS00001) from ProSite to extracts the N-glycosylation pattern/sequon/motif N-{P}-[ST]-{P} where P is not a proline from the UniProtKB canonical sequences. More info - https://prosite.expasy.org/PDOC00001, https://prosite.expasy.org/PS00001 and extracts as a csv.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_canonicalsequences.fasta\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_canonicalsequences.fasta\n Name: prosite.dat\n URI: /data/shared/glyds/downloads/prosite/prosite.dat\n Output Subdomain\n Name: fruitfly_protein_glycosylation_motifs.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_glycosylation_motifs.csv\n Name: fruitfly_protein_glycosylation_motifs.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_glycosylation_motifs.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10795\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"3488\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"3488\"\n Name: \"motif\"\n Description: \"Glycan motif\"\n Unique Values: \"38\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_glycosylation_motifs.csv" }