{
    "bcoid": "GLY_000637",
    "title": "Fruitfly Protein Citations (UniProtKB)",
    "description": "The Fruitfly Protein Citations dataset contains publication information for fruitfly [taxid:7227] UniProtKB ...",
    "filename": "fruitfly_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Drosophila melanogaster",
        "molecule": "Protein",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "M9PJ12-1...",
                "The genome s..."
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                "M9PJ12-1...",
                "Finishing a ..."
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                "Wheeler D.A., Lewis S.E., Patel S., Carlson J., Rubin G.M., Kronmiller B., Ashburner M., Celniker S.E., Frise E., Kaminker J.S., Svirskas R., Bergman C.M.",
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                "The Release 5.1 annotation of Drosophila melanogaster heterochromatin.",
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                "Adams M.D., Brottier P., Dew I., Dugan-Rocha S., Gibbs R.A., Gu Z., Kodira C.D., Lai Z., Li J., Li P.W., Li Z., Liu X., Muzny D.M., Myers E.W., Nusskern D.R., Reinert K., Scherer S.E., Shen H., Shue B.C., Sutton G.G., Turner R., Venter J.C., Wang X., Weissenbach J., Worley K.C., Yang S., Ye J., Zhan M., Zhang G., Zhang Q., Zhao Q., Zheng L., Zheng X.H., Zhou X., Bouck J., Durbin K.J., Nelson D.L., Richards S., Wu D., Dunn P., Kalush F., Lewis S.E., Mays A.D., Liang Y., Zhu X., Gocayne J.D., Kraft C., Wassarman D.A., Woodage T., Zhu S., Morris J., Downes M., Lin X., Murphy B., Deng Z., Champe M., Li J.H., Lei Y., Basu A., Davies P., Pan S., Smith T., Palazzolo M., Wei M.-H., Guan P., Puri V., Gorrell J.H., Doyle C., Karpen G.H., Rubin G.M., Bhandari D., Smith T.J., Nelson D.R., Gong F., Burtis K.C., Zhong W., Houck J., Wei M.H., Miklos G.L.G., Williams S.M., Wang A.H., Holt R.A., Kimmel B.E., Busam D.A., Weinstock G.M., Strong R., Simpson M., Wang Z.Y., An H.J., Wang Z.-Y., Harris N.L., Abril J.F., Baldwin D., Ballew R.M., Baxendale J., Center A., Dahlke C., Delcher A., Dodson K., Evans C.A., Ferriera S., Fosler C., Gabrielian A.E., Glasser K., Glodek A., Harris M., Heiman T.J., Hostin D., Ibegwam C., Ke Z., Ketchum K.A., Kravitz S., Mobarry C., Moy M., Remington K., Rogers Y.H., Smith H.O., Venter E., Wortman J.R., Ferraz C., Berman B.P., Stapleton M., Cawley S., Kulp D., Lasko P., Ashburner M., Fleischmann W., Amanatides P.G., Beeson K.Y., Davenport L.B., Dietz S.M., Evangelista C.C., Jalali M., Kraft C.L., Levitsky A.A., McIntosh T.C., Milshina N.V., Nelson K.A., Zhu S.C., Pollard J., McLeod M.P., Botchan M.R., Gelbart W.M., Mount S.M., Spradling A.C., Kennison J.A., Saunders R.D., Saunders R.D.C., Blazej R.G., Celniker S.E., Dunkov B.C., Galle R.F., George R.A., Harvey D.A., Hoskins R.A., Houston K.A., Reese M.G., Wan K.H., Butler H., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baxter E.G., Bayraktaroglu L., Beasley E.M., Benos P.V., Bolshakov S., Borkova D., Brandon R.C., Brokstein P., Cadieu E., Chandra I., Chen L.X., Cherry J.M., Doup L.E., Gabor G.L., Garg N.S., Harvey D., Helt G., Henderson S.N., Hernandez J.R., Howland T.J., Mattei B., McPherson D., Merkulov G., Moshrefi A., Murphy L., Nelson C.R., Nixon K., Pacleb J.M., Pfeiffer B.D., Pittman G.S., Rogers Y.-H.C., Scheeler F., Siden-Kiamos I., Skupski M.P., Spier E., Sun E., Svirskas R., Tector C., WoodageT, Yandell M.D., Yao Q.A., Yeh R.-F., Yeh R.F., Zaveri J.S., Zhong F.N., de Pablos B.",
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                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Mol. Biosyst.",
                "2007",
                "Aebersold R., Eng J.K., Bodenmiller B., Juenger M.A., Mueller L.N., Pedrioli P.G.A., Pflieger D., Tao W.A.",
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                "1994",
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                "The genome sequence of Drosophila melanogaster.",
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                "2000",
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                "P40792-1",
                "A Drosophila homolog of the Rac- and Cdc42-activated serine/threonine kinase PAK is a potential focal adhesion and focal complex protein that colocalizes with dynamic actin structures.",
                "Mol. Cell. Biol.",
                "1996",
                "Lee J., Leung T., Lim L., Manser E., Tan I., Harden N., Loh H.Y., Ong Y.M.",
                "protein_xref_pubmed",
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                "The genome sequence of Drosophila melanogaster.",
                "Science",
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                "protein_xref_pubmed",
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                "Functional analysis of Cdc42 in actin filament assembly, epithelial morphogenesis, and cell signaling during Drosophila development.",
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                "Fehon R.G., Camp J.T., Genova J.L., Jong S.",
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            [
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                "Mbt, a Drosophila PAK protein, combines with Cdc42 to regulate photoreceptor cell morphogenesis.",
                "Development",
                "2003",
                "Raabe T., Schneeberger D.",
                "protein_xref_pubmed",
                "12490550",
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            ],
            [
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                "A Drosophila full-length cDNA resource.",
                "Genome Biol.",
                "2002",
                "Park S., Yu C., Champe M., Rubin G.M., Kronmiller B., Stapleton M., Celniker S.E., George R.A., Wan K.H., Brokstein P., Carlson J.W., Guarin H., Pacleb J.M.",
                "protein_xref_pubmed",
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            [
                "P40793-1",
                "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.",
                "Genome Biol.",
                "2002",
                "Huang Y., Lewis S.E., Campbell K.S., Russo S., Rubin G.M., Misra S., Richter J., Yamada C., Harris N.L., Smith C.D., Berman B.P., Stapleton M., Ashburner M., Gelbart W.M., Schroeder A.J., Celniker S.E., Bayraktaroglu L., Bettencourt B.R., Crosby M.A., Drysdale R.A., Hradecky P., Kaminker J.S., Matthews B.B., Millburn G.H., Mungall C.J., Prochnik S.E., Shu S.Q., Tupy J.L., Whitfied E.J., Whitfield E.J., de Grey A.D., de Grey A.D.N.J.",
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            [
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                "Unique and Overlapping Functions of Formins Frl and DAAM During Ommatidial Rotation and Neuronal Development in Drosophila.",
                "Genetics",
                "2016",
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            ],
            [
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                "Distinct morphogenetic functions of similar small GTPases: Drosophila Drac1 is involved in axonal outgrowth and myoblast fusion.",
                "Genes Dev.",
                "1994",
                "Luo L., Jan L.Y., Jan Y., Liao Y.J.",
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            [
                "P40793-1",
                "A Drosophila homolog of the Rac- and Cdc42-activated serine/threonine kinase PAK is a potential focal adhesion and focal complex protein that colocalizes with dynamic actin structures.",
                "Mol. Cell. Biol.",
                "1996",
                "Lee J., Leung T., Lim L., Manser E., Tan I., Harden N., Loh H.Y., Ong Y.M.",
                "protein_xref_pubmed",
                "8628256",
                "protein_xref_uniprotkb",
                "P40793"
            ],
            [
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                "Luo L., Tang G., Lee T., Jan Y.N., Jan L.Y., Tsai L.",
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            [
                "P40791-1",
                "The genome sequence of Drosophila melanogaster.",
                "Science",
                "2000",
                "Adams M.D., Brottier P., Dew I., Dugan-Rocha S., Gibbs R.A., Gu Z., Kodira C.D., Lai Z., Li J., Li P.W., Li Z., Liu X., Muzny D.M., Myers E.W., Nusskern D.R., Reinert K., Scherer S.E., Shen H., Shue B.C., Sutton G.G., Turner R., Venter J.C., Wang X., Weissenbach J., Worley K.C., Yang S., Ye J., Zhan M., Zhang G., Zhang Q., Zhao Q., Zheng L., Zheng X.H., Zhou X., Bouck J., Durbin K.J., Nelson D.L., Richards S., Wu D., Dunn P., Kalush F., Lewis S.E., Mays A.D., Liang Y., Zhu X., Gocayne J.D., Kraft C., Wassarman D.A., Woodage T., Zhu S., Morris J., Downes M., Lin X., Murphy B., Deng Z., Champe M., Li J.H., Lei Y., Basu A., Davies P., Pan S., Smith T., Palazzolo M., Wei M.-H., Guan P., Puri V., Gorrell J.H., Doyle C., Karpen G.H., Rubin G.M., Bhandari D., Smith T.J., Nelson D.R., Gong F., Burtis K.C., Zhong W., Houck J., Wei M.H., Miklos G.L.G., Williams S.M., Wang A.H., Holt R.A., Kimmel B.E., Busam D.A., Weinstock G.M., Strong R., Simpson M., Wang Z.Y., An H.J., Wang Z.-Y., Harris N.L., Abril J.F., Baldwin D., Ballew R.M., Baxendale J., Center A., Dahlke C., Delcher A., Dodson K., Evans C.A., Ferriera S., Fosler C., Gabrielian A.E., Glasser K., Glodek A., Harris M., Heiman T.J., Hostin D., Ibegwam C., Ke Z., Ketchum K.A., Kravitz S., Mobarry C., Moy M., Remington K., Rogers Y.H., Smith H.O., Venter E., Wortman J.R., Ferraz C., Berman B.P., Stapleton M., Cawley S., Kulp D., Lasko P., Ashburner M., Fleischmann W., Amanatides P.G., Beeson K.Y., Davenport L.B., Dietz S.M., Evangelista C.C., Jalali M., Kraft C.L., Levitsky A.A., McIntosh T.C., Milshina N.V., Nelson K.A., Zhu S.C., Pollard J., McLeod M.P., Botchan M.R., Gelbart W.M., Mount S.M., Spradling A.C., Kennison J.A., Saunders R.D., Saunders R.D.C., Blazej R.G., Celniker S.E., Dunkov B.C., Galle R.F., George R.A., Harvey D.A., Hoskins R.A., Houston K.A., Reese M.G., Wan K.H., Butler H., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baxter E.G., Bayraktaroglu L., Beasley E.M., Benos P.V., Bolshakov S., Borkova D., Brandon R.C., Brokstein P., Cadieu E., Chandra I., Chen L.X., Cherry J.M., Doup L.E., Gabor G.L., Garg N.S., Harvey D., Helt G., Henderson S.N., Hernandez J.R., Howland T.J., Mattei B., McPherson D., Merkulov G., Moshrefi A., Murphy L., Nelson C.R., Nixon K., Pacleb J.M., Pfeiffer B.D., Pittman G.S., Rogers Y.-H.C., Scheeler F., Siden-Kiamos I., Skupski M.P., Spier E., Sun E., Svirskas R., Tector C., WoodageT, Yandell M.D., Yao Q.A., Yeh R.-F., Yeh R.F., Zaveri J.S., Zhong F.N., de Pablos B.",
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            [
                "P40791-1",
                "A Drosophila full-length cDNA resource.",
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                "2002",
                "Park S., Yu C., Champe M., Rubin G.M., Kronmiller B., Stapleton M., Celniker S.E., George R.A., Wan K.H., Brokstein P., Carlson J.W., Guarin H., Pacleb J.M.",
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                "P40791-1",
                "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.",
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                "2002",
                "Huang Y., Lewis S.E., Campbell K.S., Russo S., Rubin G.M., Misra S., Richter J., Yamada C., Harris N.L., Smith C.D., Berman B.P., Stapleton M., Ashburner M., Gelbart W.M., Schroeder A.J., Celniker S.E., Bayraktaroglu L., Bettencourt B.R., Crosby M.A., Drysdale R.A., Hradecky P., Kaminker J.S., Matthews B.B., Millburn G.H., Mungall C.J., Prochnik S.E., Shu S.Q., Tupy J.L., Whitfied E.J., Whitfield E.J., de Grey A.D., de Grey A.D.N.J.",
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            [
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
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                "P40791"
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                "Identification of singles bar as a direct transcriptional target of Drosophila Myocyte enhancer factor-2 and a regulator of adult myoblast fusion.",
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                "Drosophila MEF2 is regulated by twist and is expressed in both the primordia and differentiated cells of the embryonic somatic, visceral and heart musculature.",
                "Mech. Dev.",
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                "Requirement of MADS domain transcription factor D-MEF2 for muscle formation in Drosophila.",
                "Science",
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            [
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                "D-mef2: a Drosophila mesoderm-specific MADS box-containing gene with a biphasic expression profile during embryogenesis.",
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            ],
            [
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                "D-MEF2: a MADS box transcription factor expressed in differentiating mesoderm and muscle cell lineages during Drosophila embryogenesis.",
                "Proc. Natl. Acad. Sci. U.S.A.",
                "1994",
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            [
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                "A homolog of human transcription factor NF-X1 encoded by the Drosophila shuttle craft gene is required in the embryonic central nervous system.",
                "Mol. Cell. Biol.",
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                "Li Z., Tolias P.P., Stroumbakis N.D.",
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            [
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                "An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region.",
                "Genetics",
                "1999",
                "Lewis S.E., Davis T., Hong L., Martin C., Palazzolo M., Doyle C., Rubin G.M., Misra S., Harris N.L., Johnson G., Ashburner M., Spradling A.C., Tsang G., Roote J., Blazej R.G., Celniker S.E., Galle R.F., George R.A., Hartzell G., Harvey D.A., Hoskins R.A., Houston K.A., Moshrefi A.R., Reese M.G., Wan K.H., Whitelaw K.",
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            ],
            [
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                "The genome sequence of Drosophila melanogaster.",
                "Science",
                "2000",
                "Adams M.D., Brottier P., Dew I., Dugan-Rocha S., Gibbs R.A., Gu Z., Kodira C.D., Lai Z., Li J., Li P.W., Li Z., Liu X., Muzny D.M., Myers E.W., Nusskern D.R., Reinert K., Scherer S.E., Shen H., Shue B.C., Sutton G.G., Turner R., Venter J.C., Wang X., Weissenbach J., Worley K.C., Yang S., Ye J., Zhan M., Zhang G., Zhang Q., Zhao Q., Zheng L., Zheng X.H., Zhou X., Bouck J., Durbin K.J., Nelson D.L., Richards S., Wu D., Dunn P., Kalush F., Lewis S.E., Mays A.D., Liang Y., Zhu X., Gocayne J.D., Kraft C., Wassarman D.A., Woodage T., Zhu S., Morris J., Downes M., Lin X., Murphy B., Deng Z., Champe M., Li J.H., Lei Y., Basu A., Davies P., Pan S., Smith T., Palazzolo M., Wei M.-H., Guan P., Puri V., Gorrell J.H., Doyle C., Karpen G.H., Rubin G.M., Bhandari D., Smith T.J., Nelson D.R., Gong F., Burtis K.C., Zhong W., Houck J., Wei M.H., Miklos G.L.G., Williams S.M., Wang A.H., Holt R.A., Kimmel B.E., Busam D.A., Weinstock G.M., Strong R., Simpson M., Wang Z.Y., An H.J., Wang Z.-Y., Harris N.L., Abril J.F., Baldwin D., Ballew R.M., Baxendale J., Center A., Dahlke C., Delcher A., Dodson K., Evans C.A., Ferriera S., Fosler C., Gabrielian A.E., Glasser K., Glodek A., Harris M., Heiman T.J., Hostin D., Ibegwam C., Ke Z., Ketchum K.A., Kravitz S., Mobarry C., Moy M., Remington K., Rogers Y.H., Smith H.O., Venter E., Wortman J.R., Ferraz C., Berman B.P., Stapleton M., Cawley S., Kulp D., Lasko P., Ashburner M., Fleischmann W., Amanatides P.G., Beeson K.Y., Davenport L.B., Dietz S.M., Evangelista C.C., Jalali M., Kraft C.L., Levitsky A.A., McIntosh T.C., Milshina N.V., Nelson K.A., Zhu S.C., Pollard J., McLeod M.P., Botchan M.R., Gelbart W.M., Mount S.M., Spradling A.C., Kennison J.A., Saunders R.D., Saunders R.D.C., Blazej R.G., Celniker S.E., Dunkov B.C., Galle R.F., George R.A., Harvey D.A., Hoskins R.A., Houston K.A., Reese M.G., Wan K.H., Butler H., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baxter E.G., Bayraktaroglu L., Beasley E.M., Benos P.V., Bolshakov S., Borkova D., Brandon R.C., Brokstein P., Cadieu E., Chandra I., Chen L.X., Cherry J.M., Doup L.E., Gabor G.L., Garg N.S., Harvey D., Helt G., Henderson S.N., Hernandez J.R., Howland T.J., Mattei B., McPherson D., Merkulov G., Moshrefi A., Murphy L., Nelson C.R., Nixon K., Pacleb J.M., Pfeiffer B.D., Pittman G.S., Rogers Y.-H.C., Scheeler F., Siden-Kiamos I., Skupski M.P., Spier E., Sun E., Svirskas R., Tector C., WoodageT, Yandell M.D., Yao Q.A., Yeh R.-F., Yeh R.F., Zaveri J.S., Zhong F.N., de Pablos B.",
                "protein_xref_pubmed",
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            [
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                "A Drosophila complementary DNA resource.",
                "Science",
                "2000",
                "Hong L., Rubin G.M., Stapleton M., Harvey D.A., Brokstein P., Evans-Holm M., Frise E.",
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                "10731138",
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            [
                "P40798-1",
                "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.",
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                "2002",
                "Huang Y., Lewis S.E., Campbell K.S., Russo S., Rubin G.M., Misra S., Richter J., Yamada C., Harris N.L., Smith C.D., Berman B.P., Stapleton M., Ashburner M., Gelbart W.M., Schroeder A.J., Celniker S.E., Bayraktaroglu L., Bettencourt B.R., Crosby M.A., Drysdale R.A., Hradecky P., Kaminker J.S., Matthews B.B., Millburn G.H., Mungall C.J., Prochnik S.E., Shu S.Q., Tupy J.L., Whitfied E.J., Whitfield E.J., de Grey A.D., de Grey A.D.N.J.",
                "protein_xref_pubmed",
                "12537572",
                "protein_xref_uniprotkb",
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            ],
            [
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "J. Proteome Res.",
                "2008",
                "Beausoleil S.A., Gygi S.P., Villen J., Zhai B., Mintseris J.",
                "protein_xref_pubmed",
                "18327897",
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            [
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                "The genome sequence of Drosophila melanogaster.",
                "Science",
                "2000",
                "Adams M.D., Brottier P., Dew I., Dugan-Rocha S., Gibbs R.A., Gu Z., Kodira C.D., Lai Z., Li J., Li P.W., Li Z., Liu X., Muzny D.M., Myers E.W., Nusskern D.R., Reinert K., Scherer S.E., Shen H., Shue B.C., Sutton G.G., Turner R., Venter J.C., Wang X., Weissenbach J., Worley K.C., Yang S., Ye J., Zhan M., Zhang G., Zhang Q., Zhao Q., Zheng L., Zheng X.H., Zhou X., Bouck J., Durbin K.J., Nelson D.L., Richards S., Wu D., Dunn P., Kalush F., Lewis S.E., Mays A.D., Liang Y., Zhu X., Gocayne J.D., Kraft C., Wassarman D.A., Woodage T., Zhu S., Morris J., Downes M., Lin X., Murphy B., Deng Z., Champe M., Li J.H., Lei Y., Basu A., Davies P., Pan S., Smith T., Palazzolo M., Wei M.-H., Guan P., Puri V., Gorrell J.H., Doyle C., Karpen G.H., Rubin G.M., Bhandari D., Smith T.J., Nelson D.R., Gong F., Burtis K.C., Zhong W., Houck J., Wei M.H., Miklos G.L.G., Williams S.M., Wang A.H., Holt R.A., Kimmel B.E., Busam D.A., Weinstock G.M., Strong R., Simpson M., Wang Z.Y., An H.J., Wang Z.-Y., Harris N.L., Abril J.F., Baldwin D., Ballew R.M., Baxendale J., Center A., Dahlke C., Delcher A., Dodson K., Evans C.A., Ferriera S., Fosler C., Gabrielian A.E., Glasser K., Glodek A., Harris M., Heiman T.J., Hostin D., Ibegwam C., Ke Z., Ketchum K.A., Kravitz S., Mobarry C., Moy M., Remington K., Rogers Y.H., Smith H.O., Venter E., Wortman J.R., Ferraz C., Berman B.P., Stapleton M., Cawley S., Kulp D., Lasko P., Ashburner M., Fleischmann W., Amanatides P.G., Beeson K.Y., Davenport L.B., Dietz S.M., Evangelista C.C., Jalali M., Kraft C.L., Levitsky A.A., McIntosh T.C., Milshina N.V., Nelson K.A., Zhu S.C., Pollard J., McLeod M.P., Botchan M.R., Gelbart W.M., Mount S.M., Spradling A.C., Kennison J.A., Saunders R.D., Saunders R.D.C., Blazej R.G., Celniker S.E., Dunkov B.C., Galle R.F., George R.A., Harvey D.A., Hoskins R.A., Houston K.A., Reese M.G., Wan K.H., Butler H., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baxter E.G., Bayraktaroglu L., Beasley E.M., Benos P.V., Bolshakov S., Borkova D., Brandon R.C., Brokstein P., Cadieu E., Chandra I., Chen L.X., Cherry J.M., Doup L.E., Gabor G.L., Garg N.S., Harvey D., Helt G., Henderson S.N., Hernandez J.R., Howland T.J., Mattei B., McPherson D., Merkulov G., Moshrefi A., Murphy L., Nelson C.R., Nixon K., Pacleb J.M., Pfeiffer B.D., Pittman G.S., Rogers Y.-H.C., Scheeler F., Siden-Kiamos I., Skupski M.P., Spier E., Sun E., Svirskas R., Tector C., WoodageT, Yandell M.D., Yao Q.A., Yeh R.-F., Yeh R.F., Zaveri J.S., Zhong F.N., de Pablos B.",
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                "10731132",
                "protein_xref_uniprotkb",
                "P40421"
            ],
            [
                "P40421-1",
                "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.",
                "Genome Biol.",
                "2002",
                "Huang Y., Lewis S.E., Campbell K.S., Russo S., Rubin G.M., Misra S., Richter J., Yamada C., Harris N.L., Smith C.D., Berman B.P., Stapleton M., Ashburner M., Gelbart W.M., Schroeder A.J., Celniker S.E., Bayraktaroglu L., Bettencourt B.R., Crosby M.A., Drysdale R.A., Hradecky P., Kaminker J.S., Matthews B.B., Millburn G.H., Mungall C.J., Prochnik S.E., Shu S.Q., Tupy J.L., Whitfied E.J., Whitfield E.J., de Grey A.D., de Grey A.D.N.J.",
                "protein_xref_pubmed",
                "12537572",
                "protein_xref_uniprotkb",
                "P40421"
            ],
            [
                "P40421-1",
                "Drosophila retinal degeneration C (rdgC) encodes a novel serine/threonine protein phosphatase.",
                "Cell",
                "1992",
                "O'Tousa J.E., Steele F.R., Rieger R., Washburn T.",
                "protein_xref_pubmed",
                "1316807",
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            ],
            [
                "P40423-1",
                "The genome sequence of Drosophila melanogaster.",
                "Science",
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                "protein_xref_pubmed",
                "10731132",
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            [
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                "protein_xref_uniprotkb",
                "P40423"
            ],
            [
                "P40423-1",
                "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.",
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                "Huang Y., Lewis S.E., Campbell K.S., Russo S., Rubin G.M., Misra S., Richter J., Yamada C., Harris N.L., Smith C.D., Berman B.P., Stapleton M., Ashburner M., Gelbart W.M., Schroeder A.J., Celniker S.E., Bayraktaroglu L., Bettencourt B.R., Crosby M.A., Drysdale R.A., Hradecky P., Kaminker J.S., Matthews B.B., Millburn G.H., Mungall C.J., Prochnik S.E., Shu S.Q., Tupy J.L., Whitfied E.J., Whitfield E.J., de Grey A.D., de Grey A.D.N.J.",
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            ],
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                "17372656",
                "protein_xref_uniprotkb",
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            ],
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                "P40423"
            ],
            [
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                "The regulatory light chain of nonmuscle myosin is encoded by spaghetti-squash, a gene required for cytokinesis in Drosophila.",
                "Cell",
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                "protein_xref_pubmed",
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                "protein_xref_uniprotkb",
                "P40423"
            ],
            [
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                "Coordinate regulation of downstream genes by extradenticle and the homeotic selector proteins.",
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                "Rauskolb C., Wieschaus E.",
                "protein_xref_pubmed",
                "7914871",
                "protein_xref_uniprotkb",
                "P40427"
            ],
            [
                "P40427-1",
                "Dpbx, a new homeobox gene closely related to the human proto-oncogene pbx1 molecular structure and developmental expression.",
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                "protein_xref_pubmed",
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                "protein_xref_uniprotkb",
                "P40427"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Protein Citations (UniProtKB)\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2022-08-30T14:17:09.307325\n\nModified on\n   - 2022-09-26T09:08:12.727097\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Protein Citations dataset contains publication information for fruitfly [taxid:7227] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out as per https://data.glygen.org/ln2data/releases/data/v-1.12.3/compiled/fruitfly_protein_blacklisted_pmids_uniprotkb.csv. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_citations_uniprotkb.csv\n      Name: fruitfly_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13821\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"6202\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"312\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"47\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"6085\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"6203\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"21947\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_citations_uniprotkb.csv"
}