{ "bcoid": "GLY_000617", "title": "Human Cancer Mutation Loss of Glycosylation", "description": "", "filename": "human_protein_mutation_cancer_glycosylation_loss.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Cancer Mutations Loss of Glycosylation", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q6YHK3-1...", "419..." ], [ "Q6YHK3-1...", "419..." ] ], "headers": [ "uniprotkb_ca...", "mut_pos..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "mut_pos" }, { "type": "string", "label": "mut_ref_aa" }, { "type": "string", "label": "mut_alt_aa" }, { "type": "string", "label": "ref_motif" }, { "type": "string", "label": "alt_motif" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "do_name" }, { "type": "string", "label": "mut_flags_score" }, { "type": 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mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "G75983OB", "protein_xref_glyconnect", "1010", "1", "glyconnect" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "G75983OB", "protein_xref_pubmed", "30237853", "1", "glyconnect" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "G75983OB", "protein_xref_pubmed", "30237853", "1", "glyconnect" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9Y5C1-1", "296", "N", "K", "NET", "KET", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->KET).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9Y5C1-1", "298", "T", "A", "NET", "NEA", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).", "biomuta", "296", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q76B58-1", "337", "N", "D", "NTS", "DTS", "4159", "DOID:4159 / skin cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NTS->DTS).", "biomuta", "337", "N", "", "protein_xref_uniprotkb_gly", "Q76B58", "0", "uniprotkb" ], [ "Q76B58-1", "339", "S", "P", "NTS", "NTP", "10534", "DOID:10534 / stomach cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NTS->NTP).", "biomuta", "337", "N", "", "protein_xref_uniprotkb_gly", "Q76B58", "0", "uniprotkb" ], [ "Q76B58-1", "339", "S", "P", "NTS", "NTP", "10534", "DOID:10534 / stomach cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NTS->NTP).", "biomuta", "337", "N", "", "protein_xref_uniprotkb_gly", "Q76B58", "0", "uniprotkb" ], [ "Q70Z35-1", "66", "T", "R", "NVT", "NVR", "1324", "DOID:1324 / lung cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NVT->NVR).", "biomuta", "64", "N", "G90734RJ", "protein_xref_unicarbkb", "Q70Z35", "1", "unicarbkb" ], [ "Q70Z35-1", "66", "T", "R", "NVT", "NVR", "1324", "DOID:1324 / lung cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NVT->NVR).", "biomuta", "64", "N", "G90734RJ", "protein_xref_pubmed", "26791533", "1", "unicarbkb" ], [ "Q8IZU9-1", "253", "N", "T", "NLS", "TLS", "9256", "DOID:9256 / colorectal cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NLS->TLS).", "biomuta", "253", "N", "", "protein_xref_uniprotkb_gly", "Q8IZU9", "0", "uniprotkb" ], [ "Q9H172-1", "422", "N", "K", "NNT", "KNT", "263", "DOID:263 / kidney cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NNT->KNT).", "biomuta", "422", "N", "", "protein_xref_uniprotkb_gly", "Q9H172", "0", "uniprotkb" ], [ "Q9UHC6-1", "438", "T", "K", "NIT", "NIK", "1324", "DOID:1324 / lung cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NIT->NIK).", "biomuta", "436", "N", "", "protein_xref_uniprotkb_gly", "Q9UHC6", "0", "uniprotkb" ], [ "O75445-1", "1176", "S", "F", "NQS", "NQF", "4362", "DOID:4362 / cervical cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NQS->NQF).", "biomuta", "1174", "N", "", "protein_xref_uniprotkb_gly", "O75445", "0", "uniprotkb" ], [ "O75445-1", "1176", "S", "Y", "NQS", "NQY", "1324", "DOID:1324 / lung cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NQS->NQY).", "biomuta", "1174", "N", "", "protein_xref_uniprotkb_gly", "O75445", "0", "uniprotkb" ] ] }, "readme": "Name\n - Human Cancer Mutation Loss of Glycosylation\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2021-10-15T15:32:16.971706\n\nModified on\n - 2022-09-26T09:08:12.730456\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_masterlist.csv\n Name: human_protein_mutation_cancer.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_mutation_cancer.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: human_proteoform_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: aadict.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/misc/aadict.csv\n Output Subdomain\n Name: human_protein_mutation_cancer_glycosylation_loss.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv\n Name: human_protein_mutation_cancer_glycosylation_loss.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_mutation_cancer_glycosylation_loss.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2668\"\n Name: \"mut_pos\"\n Description: \"\"\n Unique Values: \"1652\"\n Name: \"mut_ref_aa\"\n Description: \"\"\n Unique Values: \"10\"\n Name: \"mut_alt_aa\"\n Description: \"\"\n Unique Values: \"18\"\n Name: \"ref_motif\"\n Description: \"Reference motif\"\n Unique Values: \"70\"\n Name: \"alt_motif\"\n Description: \"Altered motif\"\n Unique Values: \"543\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"34\"\n Name: \"do_name\"\n Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n Unique Values: \"35\"\n Name: \"mut_flags_score\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"mut_flags\"\n Description: \"\"\n Unique Values: \"912\"\n Name: \"mut_source\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"gly_pos\"\n Description: \"\"\n Unique Values: \"1526\"\n Name: \"gly_ref_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"885\"\n Name: \"gly_xref_key\"\n Description: \"\"\n Unique Values: \"12\"\n Name: \"gly_xref_id\"\n Description: \"\"\n Unique Values: \"4454\"\n Name: \"gly_flags_score\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"gly_source\"\n Description: \"\"\n Unique Values: \"8\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv" }