{
    "bcoid": "GLY_000608",
    "title": "Mouse Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "",
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        "molecule": "Protein",
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        "status": "Reviewed",
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                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
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                "Trost M, English L, Lemieux S, Courcelles M, Desjardins M, Thibault P",
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                "Cell",
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                "Ballif BA, Carey GR, Sunyaev SR, Gygi SP",
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                "Large-scale phosphorylation analysis of mouse liver.",
                "Proceedings of the National Academy of Sciences of the United States of America",
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                "Villen J, Beausoleil SA, Gerber SA, Gygi SP",
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                "2010 Dec 23",
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                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
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            [
                "Q9D0F9-1",
                "Large-scale phosphorylation analysis of mouse liver.",
                "Proceedings of the National Academy of Sciences of the United States of America",
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                "Villen J, Beausoleil SA, Gerber SA, Gygi SP",
                "protein_xref_pubmed",
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                "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.",
                "Molecular & cellular proteomics : MCP",
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                "Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ",
                "protein_xref_pubmed",
                "19131326",
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                "Q9D0F9"
            ],
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                "A serine cluster mediates BMAL1-dependent CLOCK phosphorylation and degradation.",
                "Cell cycle (Georgetown, Tex.)",
                "2009 Dec 15",
                "Spengler ML, Kuropatwinski KK, Schumer M, Antoch MP",
                "protein_xref_pubmed",
                "19946213",
                "protein_xref_uniprotkb",
                "O08785"
            ],
            [
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                "Homeodomain-interacting protein kinase 1 modulates Daxx localization, phosphorylation, and transcriptional activity.",
                "Molecular and cellular biology",
                "2003 Feb",
                "Ecsedy JA, Michaelson JS, Leder P",
                "protein_xref_pubmed",
                "12529400",
                "protein_xref_uniprotkb",
                "O35613"
            ],
            [
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                "Netrin stimulates tyrosine phosphorylation of the UNC-5 family of netrin receptors and induces Shp2 binding to the RCM cytodomain.",
                "The Journal of biological chemistry",
                "2001 Nov 2",
                "Tong J, Killeen M, Steven R, Binns KL, Culotti J, Pawson T",
                "protein_xref_pubmed",
                "11533026",
                "protein_xref_uniprotkb",
                "O08747"
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                "Phosphorylation of BATF regulates DNA binding: a novel mechanism for AP-1 (activator protein-1) regulation.",
                "The Biochemical journal",
                "2003 Sep 1",
                "Deppmann CD, Thornton TM, Utama FE, Taparowsky EJ",
                "protein_xref_pubmed",
                "12809553",
                "protein_xref_uniprotkb",
                "O35284"
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            [
                "B2RU80-1",
                "Tyrosine phosphorylation of R3 subtype receptor-type protein tyrosine phosphatases and their complex formations with Grb2 or Fyn.",
                "Genes to cells : devoted to molecular &amp; cellular mechanisms",
                "2010 May",
                "Murata Y, Mori M, Kotani T, Supriatna Y, Okazawa H, Kusakari S, Saito Y, Ohnishi H, Matozaki T",
                "protein_xref_pubmed",
                "20398064",
                "protein_xref_uniprotkb",
                "B2RU80"
            ],
            [
                "P01101-1",
                "Phosphorylation of the carboxyl-terminal transactivation domain of c-Fos by extracellular signal-regulated kinase mediates the transcriptional activation of AP-1 and cellular transformation induced by platelet-derived growth factor.",
                "Molecular and cellular biology",
                "2003 Oct",
                "Monje P, Marinissen MJ, Gutkind JS",
                "protein_xref_pubmed",
                "12972619",
                "protein_xref_uniprotkb",
                "P01101"
            ],
            [
                "O54724-1",
                "The N-terminal leucine-zipper motif in PTRF/cavin-1 is essential and sufficient for its caveolae-association.",
                "Biochemical and biophysical research communications",
                "2015 Jan 16",
                "Wei Z, Zou X, Wang H, Lei J, Wu Y, Liao K",
                "protein_xref_pubmed",
                "25514038",
                "protein_xref_uniprotkb",
                "O54724"
            ],
            [
                "P13864-1",
                "Phosphorylation of serine-515 activates the Mammalian maintenance methyltransferase Dnmt1.",
                "Epigenetics",
                "2007 Sep",
                "Goyal R, Rathert P, Laser H, Gowher H, Jeltsch A",
                "protein_xref_pubmed",
                "17965600",
                "protein_xref_uniprotkb",
                "P13864"
            ],
            [
                "P13864-1",
                "Peptide mapping of the murine DNA methyltransferase reveals a major phosphorylation site and the start of translation.",
                "The Journal of biological chemistry",
                "1997 Jul 11",
                "Glickman JF, Pavlovich JG, Reich NO",
                "protein_xref_pubmed",
                "9211941",
                "protein_xref_uniprotkb",
                "P13864"
            ],
            [
                "P09055-1",
                "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2007 Nov 1",
                "Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR",
                "protein_xref_pubmed",
                "17947660",
                "protein_xref_uniprotkb",
                "P09055"
            ],
            [
                "O35625-1",
                "A GSK3beta phosphorylation site in axin modulates interaction with beta-catenin and Tcf-mediated gene expression.",
                "Biochemical and biophysical research communications",
                "1999 Dec 9",
                "Jho Eh, Lomvardas S, Costantini F",
                "protein_xref_pubmed",
                "10581160",
                "protein_xref_uniprotkb",
                "O35625"
            ],
            [
                "O70469-1",
                "Recruitment of Dok-R to the EGF receptor through its PTB domain is required for attenuation of Erk MAP kinase activation.",
                "Current biology : CB",
                "1999 Sep 23",
                "Jones N, Dumont DJ",
                "protein_xref_pubmed",
                "10508618",
                "protein_xref_uniprotkb",
                "O70469"
            ],
            [
                "O54724-1",
                "PTRF/Cavin-1 promotes efficient ribosomal RNA transcription in response to metabolic challenges.",
                "eLife",
                "2016 Aug 16",
                "Liu L, Pilch PF",
                "protein_xref_pubmed",
                "27528195",
                "protein_xref_uniprotkb",
                "O54724"
            ],
            [
                "O70405-1",
                "Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy.",
                "Science (New York, N.Y.)",
                "2011 Jan 28",
                "Egan DF, Shackelford DB, Mihaylova MM, Gelino S, Kohnz RA, Mair W, Vasquez DS, Joshi A, Gwinn DM, Taylor R, Asara JM, Fitzpatrick J, Dillin A, Viollet B, Kundu M, Hansen M, Shaw RJ",
                "protein_xref_pubmed",
                "21205641",
                "protein_xref_uniprotkb",
                "O70405"
            ],
            [
                "O08605-1",
                "Mitogen-activated protein kinases activate the serine/threonine kinases Mnk1 and Mnk2.",
                "The EMBO journal",
                "1997 Apr 15",
                "Waskiewicz AJ, Flynn A, Proud CG, Cooper JA",
                "protein_xref_pubmed",
                "9155017",
                "protein_xref_uniprotkb",
                "O08605"
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            [
                "Q6PAM1-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "Q6PAM1"
            ],
            [
                "A0A0B4J1G0-1",
                "IgEb immune complexes activate macrophages through FcgammaRIV binding.",
                "Nature immunology",
                "2007 Jul",
                "Hirano M, Davis RS, Fine WD, Nakamura S, Shimizu K, Yagi H, Kato K, Stephan RP, Cooper MD",
                "protein_xref_pubmed",
                "17558411",
                "protein_xref_uniprotkb",
                "A0A0B4J1G0"
            ],
            [
                "A0A0B4J1G0-1",
                "The phagosomal proteome in interferon-gamma-activated macrophages.",
                "Immunity",
                "2009 Jan 16",
                "Trost M, English L, Lemieux S, Courcelles M, Desjardins M, Thibault P",
                "protein_xref_pubmed",
                "19144319",
                "protein_xref_uniprotkb",
                "A0A0B4J1G0"
            ],
            [
                "E9Q0N2-1",
                "Tyrosine phosphorylation of R3 subtype receptor-type protein tyrosine phosphatases and their complex formations with Grb2 or Fyn.",
                "Genes to cells : devoted to molecular &amp; cellular mechanisms",
                "2010 May",
                "Murata Y, Mori M, Kotani T, Supriatna Y, Okazawa H, Kusakari S, Saito Y, Ohnishi H, Matozaki T",
                "protein_xref_pubmed",
                "20398064",
                "protein_xref_uniprotkb",
                "E9Q0N2"
            ],
            [
                "O08785-1",
                "Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription.",
                "Molecular and cellular biology",
                "2009 Jul",
                "Yoshitane H, Takao T, Satomi Y, Du NH, Okano T, Fukada Y",
                "protein_xref_pubmed",
                "19414601",
                "protein_xref_uniprotkb",
                "O08785"
            ],
            [
                "E9Q612-1",
                "Tyrosine phosphorylation of R3 subtype receptor-type protein tyrosine phosphatases and their complex formations with Grb2 or Fyn.",
                "Genes to cells : devoted to molecular &amp; cellular mechanisms",
                "2010 May",
                "Murata Y, Mori M, Kotani T, Supriatna Y, Okazawa H, Kusakari S, Saito Y, Ohnishi H, Matozaki T",
                "protein_xref_pubmed",
                "20398064",
                "protein_xref_uniprotkb",
                "E9Q612"
            ],
            [
                "P13346-1",
                "Regulation of DeltaFosB stability by phosphorylation.",
                "The Journal of neuroscience : the official journal of the Society for Neuroscience",
                "2006 May 10",
                "Ulery PG, Rudenko G, Nestler EJ",
                "protein_xref_pubmed",
                "16687504",
                "protein_xref_uniprotkb",
                "P13346"
            ],
            [
                "P00520-1",
                "Functional interaction between DNA-PK and c-Abl in response to DNA damage.",
                "Nature",
                "1997 Apr 17",
                "Kharbanda S, Pandey P, Jin S, Inoue S, Bharti A, Yuan ZM, Weichselbaum R, Weaver D, Kufe D",
                "protein_xref_pubmed",
                "9109492",
                "protein_xref_uniprotkb",
                "P00520"
            ],
            [
                "O54885-1",
                "Sequential proteolytic processing of the triggering receptor expressed on myeloid cells-2 (TREM2) protein by ectodomain shedding and gamma-secretase-dependent intramembranous cleavage.",
                "The Journal of biological chemistry",
                "2013 Nov 15",
                "Wunderlich P, Glebov K, Kemmerling N, Tien NT, Neumann H, Walter J",
                "protein_xref_pubmed",
                "24078628",
                "protein_xref_uniprotkb",
                "O54885"
            ],
            [
                "O54885-1",
                "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2007 Nov 1",
                "Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR",
                "protein_xref_pubmed",
                "17947660",
                "protein_xref_uniprotkb",
                "O54885"
            ],
            [
                "O54885-1",
                "DAP12 couples c-Fms activation to the osteoclast cytoskeleton by recruitment of Syk.",
                "Molecular cell",
                "2008 Aug 8",
                "Zou W, Reeve JL, Liu Y, Teitelbaum SL, Ross FP",
                "protein_xref_pubmed",
                "18691974",
                "protein_xref_uniprotkb",
                "O54885"
            ],
            [
                "Q8BK03-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "Q8BK03"
            ],
            [
                "O35324-1",
                "EAT-2, a SAP-like adaptor, controls NK cell activation through phospholipase Cgamma, Ca++, and Erk, leading to granule polarization.",
                "The Journal of experimental medicine",
                "2014 Apr 7",
                "Perez-Quintero LA, Roncagalli R, Guo H, Latour S, Davidson D, Veillette A",
                "protein_xref_pubmed",
                "24687958",
                "protein_xref_uniprotkb",
                "O35324"
            ],
            [
                "O88809-1",
                "Comparative phosphoproteomic analysis of neonatal and adult murine brain.",
                "Proteomics",
                "2012 Jul",
                "Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA",
                "protein_xref_pubmed",
                "22807455",
                "protein_xref_uniprotkb",
                "O88809"
            ],
            [
                "O88809-1",
                "Multisite phosphorylation of doublecortin by cyclin-dependent kinase 5.",
                "The Biochemical journal",
                "2004 Jul 15",
                "Graham ME, Ruma-Haynes P, Capes-Davis AG, Dunn JM, Tan TC, Valova VA, Robinson PJ, Jeffrey PL",
                "protein_xref_pubmed",
                "15099191",
                "protein_xref_uniprotkb",
                "O88809"
            ],
            [
                "P11881-1",
                "Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis.",
                "Journal of proteome research",
                "2008 Sep",
                "Zhou H, Ye M, Dong J, Han G, Jiang X, Wu R, Zou H",
                "protein_xref_pubmed",
                "18630941",
                "protein_xref_uniprotkb",
                "P11881"
            ],
            [
                "P11881-1",
                "Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS.",
                "Molecular &amp; cellular proteomics : MCP",
                "2007 Apr",
                "Lee J, Xu Y, Chen Y, Sprung R, Kim SC, Xie S, Zhao Y",
                "protein_xref_pubmed",
                "17208939",
                "protein_xref_uniprotkb",
                "P11881"
            ],
            [
                "P11881-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "P11881"
            ],
            [
                "O35253-1",
                "Phosphorylation of Smad7 at Ser-249 does not interfere with its inhibitory role in transforming growth factor-beta-dependent signaling but affects Smad7-dependent transcriptional activation.",
                "The Journal of biological chemistry",
                "2001 Apr 27",
                "Pulaski L, Landstrom M, Heldin CH, Souchelnytskyi S",
                "protein_xref_pubmed",
                "11278814",
                "protein_xref_uniprotkb",
                "O35253"
            ],
            [
                "Q9DBS2-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "Q9DBS2"
            ],
            [
                "A2RT67-1",
                "Regulation of DENND3, the exchange factor for the small GTPase Rab12 through an intramolecular interaction.",
                "The Journal of biological chemistry",
                "2017 Apr 28",
                "Xu J, McPherson PS",
                "protein_xref_pubmed",
                "28249939",
                "protein_xref_uniprotkb",
                "A2RT67"
            ],
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                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
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    },
    "readme": "Name\n   - Mouse Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2021-10-15T08:01:56.010001\n\nModified on\n   - 2023-03-14T17:05:22.996Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4361\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"297\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"89\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"282\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"297\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"297\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"4363\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}
