{ "bcoid": "GLY_000592", "title": "Rat Reaction Participants (Reactome)", "description": "", "filename": "rat_protein_participants_reactome.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Reaction Participants (Reactome)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "R-RNO-569623...", "R-ALL-569621..." ], [ "R-RNO-160472...", "R-RNO-160471..." ] ], "headers": [ "reaction_id...", "participant_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "reaction_id" }, { "type": "string", "label": "participant_id" }, { "type": "string", "label": "participant_name" }, { "type": "string", "label": "role" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_type" } ], [ "R-RNO-5696230", "R-ALL-5696214", "methylarsonate [cytosol]", "input", "33409", "ChEBI" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "621320", "RGD" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "MMP9_RAT", "ZINC - Predictions - Purchasable" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "MMP9_RAT", "ZINC - Substances" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "P50282", "PRO" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "NP_112317.1", "RefSeq" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "P50282", "UniProt" ], [ "R-RNO-1604722", "R-RNO-1604713", "MMP9(20-106) [extracellular region]", "output", "P50282", "ZINC target" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "P50282", "ZINC target" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "P50282", "UniProt" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "NP_112317.1", "RefSeq" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "P50282", "PRO" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "MMP9_RAT", "ZINC - Substances" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "MMP9_RAT", "ZINC - Predictions - Purchasable" ], [ "R-RNO-1604722", "R-RNO-668812", "MMP9(107-707) [extracellular region]", "output", "621320", "RGD" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "ENSRNOT00000013362", "Ensembl" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "ENSRNOG00000010017", "Ensembl" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "NP_001012760.1", "RefSeq" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "Q63802", "UniProt" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "Q63802", "PRO" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "1307895", "RGD" ], [ "R-RNO-156699", "R-RNO-69253", "WEE1 [nucleoplasm]", "input", "ENSRNOP00000013362", "Ensembl" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "ENSRNOT00000013362", "Ensembl" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "NP_001012760.1", "RefSeq" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "ENSRNOG00000010017", "Ensembl" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "Q63802", "UniProt" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "1307895", "RGD" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "ENSRNOP00000013362", "Ensembl" ], [ "R-RNO-156699", "R-RNO-156694", "phospho-p-S53-WEE1 [nucleoplasm]", "output", "Q63802", "PRO" ], [ "R-RNO-9751024", "R-ALL-9751015", "6MP [extracellular region]", "input", "7226", "Guide to Pharmacology" ], [ "R-RNO-9751024", "R-ALL-9751015", "6MP [extracellular region]", "input", "PDBC00164", "PharmacoDB" ], [ "R-RNO-917811", "R-ALL-917882", "e- [endosome membrane]", "input", "10545", "ChEBI" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "29034", "ChEBI" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "C14819", "COMPOUND" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "HMDB0015531", "HMDB Metabolite" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "D3ZE20", "UniProt" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOT00000058382", "Ensembl" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOP00000055183", "Ensembl" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOG00000017146", "Ensembl" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "2319357", "RGD" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "C00137", "COMPOUND" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "17268", "ChEBI" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "HMDB0000211", "HMDB Metabolite" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "000100018867", "ZINC" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "000003814360", "ZINC" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "C03917", "COMPOUND" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "HMDB0002961", "HMDB Metabolite" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "16330", "ChEBI" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "78273", "ChEBI" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "HMDB0006218", "HMDB Metabolite" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "000022066345", "ZINC" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "C04352", "COMPOUND" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "59458", "ChEBI" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "000003869303", "ZINC" ], [ "R-RNO-2464809", "R-ALL-2473615", "atROL [cytosol]", "input", "C00473", "COMPOUND" ], [ "R-RNO-2464809", "R-ALL-2473615", "atROL [cytosol]", "input", "17336", "ChEBI" ], [ "R-RNO-2464809", "R-ALL-2473615", "atROL [cytosol]", "input", "000003831417", "ZINC" ], [ "R-RNO-2464809", "R-ALL-2473615", "atROL [cytosol]", "input", "8144182", "PubChem Substance" ], [ "R-RNO-2464809", "R-ALL-2473615", "atROL [cytosol]", "input", "HMDB0000305", "HMDB Metabolite" ], [ "R-RNO-2464809", "R-ALL-2473604", "atROL [cytosol]", "output", "17336", "ChEBI" ], [ "R-RNO-2464809", "R-ALL-2473604", "atROL [cytosol]", "output", "8144182", "PubChem Substance" ], [ "R-RNO-2464809", "R-ALL-2473604", "atROL [cytosol]", "output", "HMDB0000305", "HMDB Metabolite" ], [ "R-RNO-2464809", "R-ALL-2473604", "atROL [cytosol]", "output", "000003831417", "ZINC" ], [ "R-RNO-2464809", "R-ALL-2473604", "atROL [cytosol]", "output", "C00473", "COMPOUND" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "F1LV96", "UniProt" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "ENSRNOT00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "ENSRNOP00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "ENSRNOG00000000500", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "NP_001258291.1", "RefSeq" ], [ "R-RNO-8943959", "R-RNO-8943884", "Scube3 [plasma membrane]", "input", "1304880", "RGD" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "F1LV96", "UniProt" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "ENSRNOT00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "1304880", "RGD" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "ENSRNOG00000000500", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "ENSRNOP00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943967", "Scube3 [plasma membrane]", "output", "NP_001258291.1", "RefSeq" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "F1LV96", "UniProt" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "NP_001258291.1", "RefSeq" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "ENSRNOP00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "1304880", "RGD" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "ENSRNOT00000000593", "Ensembl" ], [ "R-RNO-8943959", "R-RNO-8943978", "Scube3 [plasma membrane]", "output", "ENSRNOG00000000500", "Ensembl" ], [ "R-RNO-200143", "R-RNO-200155", "Akt1s1 [cytosol]", "input", "D3ZH75", "UniProt" ], [ "R-RNO-200143", "R-RNO-200155", "Akt1s1 [cytosol]", "input", "NP_001099729.2", "RefSeq" ] ] }, "readme": "Name\n - Rat Reaction Participants (Reactome)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2021-10-07T14:35:34.045437\n\nModified on\n - 2022-09-26T09:08:12.474565\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: /data/shared/glyds/downloads/chebi/07_16_2021/database_accession.tsv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_participants_reactome.csv\n Name: rat_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"6001\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"5723\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"3189\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10611\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"41\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_protein_participants_reactome.csv" }