{ "bcoid": "GLY_000559", "title": "Glycan sequences Byonic", "description": "The dataset provides the glycan sequences in Byonic format for the associated glycans (GlyTouCan Accession). ...", "filename": "glycan_sequences_byonic.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "byonic sequence format", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00002CF...", "Hex(2)NeuGc(..." ], [ "G00009BX...", "Hex(2)HexNAc..." ] ], "headers": [ "glytoucan_ac...", "sequence_byo..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "sequence_byonic" } ], [ "G00002CF", "Hex(2)NeuGc(2) % 956.29687423" ], [ "G00009BX", "Hex(2)HexNAc(2)dHex(1) % 894.33286578" ], [ "G00012MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00012RZ", "Hex(6)HexNAc(5)dHex(3)NeuAc(1) % 2734.99351197" ], [ "G00013MO", "Hex(4) % 666.2218587" ], [ "G00014MO", "Hex(2)HexNAc(2) % 748.27495691" ], [ "G00015MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00016MO", "Hex(2) % 342.1162117" ], [ "G00017IP", "Hex(3)HexNAc(4)S(1) % 1396.44334021" ], [ "G00017MO", "HexNAc(2)HexA(2) % 776.23348603" ], [ "G00018MO", "HexNAc(2)HexA(2)S(2) % 936.14711521" ], [ "G00019MO", "HexNAc(2)HexA(2)S(2) % 936.14711521" ], [ "G00020MO", "Hex(2)HexNAc(2)S(2) % 908.18858609" ], [ "G00021MO", "HexNAc(2)HexA(2)S(5) % 1176.01755898" ], [ "G00024MO", "Hex(3) % 504.1690352" ], [ "G00025AJ", "Hex(2)dHex(1)aldi(1) % 490.18977064" ], [ "G00025HU", "Hex(5)HexNAc(4)dHex(1)NeuAc(1) % 2077.74549812" ], [ "G00025MO", "Hex(4) % 666.2218587" ], [ "G00025YC", "Hex(5)HexNAc(5)dHex(1) % 1989.7294541" ], [ "G00026MO", "Hex(3)HexNAc(2) % 910.32778041" ], [ "G00027JG", "Hex(2)HexNAc(2)dHex(2) % 1040.39077465" ], [ "G00027MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00028MO", "Hex(5)HexNAc(2) % 1234.43342741" ], [ "G00029MO", "Hex(4)HexNAc(3) % 1275.45997651" ], [ "G00030HB", "Hex(8)HexNAc(5)dHex(1)NeuAc(1) % 2766.98334123" ], [ "G00030MO", "Hex(3)HexNAc(4) % 1316.48652562" ], [ "G00030SF", "Hex(3) % 504.1690352" ], [ "G00031MO", "Hex(1)HexNAc(1) % 383.142760805" ], [ "G00032MO", "Hex(1)HexNAc(1) % 383.142760805" ], [ "G00033MO", "Hex(1)HexNAc(2) % 586.22213341" ], [ "G00034MO", "Hex(1)HexNAc(2) % 586.22213341" ], [ "G00034WH", "Hex(6) % 990.3275057" ], [ "G00035MO", "HexNAc(2) % 424.16930991" ], [ "G00036MO", "HexNAc(2) % 424.16930991" ], [ "G00037MO", "HexNAc(3) % 627.248682515" ], [ "G00038JC", "Hex(2)dHex(2) % 634.23202944" ], [ "G00038MO", "HexNAc(3) % 627.248682515" ], [ "G00039MO", "HexNAc(2) % 424.16930991" ], [ "G00040MO", "HexNAc(2) % 424.16930991" ], [ "G00041IL", "Hex(1)HexNAc(2)NeuAc(1) % 877.317550045" ], [ "G00041MO", "HexNAc(2) % 424.16930991" ], [ "G00042MO", "HexNAc(2) % 424.16930991" ], [ "G00043MO", "HexNAc(2) % 424.16930991" ], [ "G00044MO", "HexNAc(2) % 424.16930991" ], [ "G00045MO", "Hex(3)HexN(1) % 665.237843105" ], [ "G00046MO", "Hex(2) % 342.1162117" ], [ "G00047MO", "Hex(1)HexNAc(1)dHex(1) % 529.200669675" ], [ "G00048MO", "Hex(1)HexNAc(1)dHex(2) % 675.258578545" ], [ "G00049MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00050MO", "Hex(3)HexNAc(1)dHex(1) % 853.306316675" ], [ "G00051MO", "Hex(1)HexNAc(1)dHex(1) % 529.200669675" ], [ "G00052MO", "Hex(1)HexNAc(1)dHex(2) % 675.258578545" ], [ "G00053MO", "Hex(1)HexNAc(1)dHex(1)NeuAc(1) % 820.29608631" ], [ "G00054MO", "Hex(1)HexNAc(1)dHex(1)NeuAc(1) % 820.29608631" ], [ "G00055MO", "Hex(1)HexNAc(1) % 383.142760805" ], [ "G00056HH", "Hex(6)HexNAc(5)dHex(1) % 2151.78227759" ], [ "G00056MO", "Hex(1)HexNAc(1) % 383.142760805" ], [ "G00057LF", "Hex(5)HexNAc(4)NeuAc(1) % 1931.68758926" ], [ "G00057MO", "HexNAc(2) % 424.16930991" ], [ "G00058MO", "Hex(2)HexNAc(2) % 748.27495691" ], [ "G00058XR", "Hex(2)HexNAc(1)S(1) % 625.152398895" ], [ "G00059MO", "Hex(3) % 504.1690352" ], [ "G00060BT", "Hex(4)HexNAc(1) % 869.301231305" ], [ "G00060MO", "Hex(4)HexNAc(1) % 869.301231305" ], [ "G00061MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00062MO", "Hex(2)HexNAc(2)NeuAc(1) % 1039.37037354" ], [ "G00063MO", "Hex(1)HexNAc(2)NeuAc(2) % 1168.41296668" ], [ "G00064MO", "Hex(3)HexNAc(2) % 910.32778041" ], [ "G00065MO", "Hex(1)HexNAc(1)NeuAc(1) % 674.23817744" ], [ "G00066MO", "Hex(1)HexNAc(1)dHex(1) % 529.200669675" ], [ "G00066WY", "Hex(3)HexNAc(2) % 910.32778041" ], [ "G00067MO", "Hex(2)dHex(1) % 488.17412057" ], [ "G00068MO", "Hex(1)dHex(1) % 326.12129707" ], [ "G00069MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00069YC", "Hex(5)HexNAc(6)dHex(3) % 2484.92464444" ], [ "G00070MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00071MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00072MO", "Hex(3)HexNAc(1) % 707.248407805" ], [ "G00076PK", "Hex(2)HexNAc(1) % 545.195584305" ], [ "G00084IF", "HexNAc(1) % 221.089937305" ], [ "G00087BY", "Hex(4)HexNAc(5)dHex(1)NeuAc(1)S(1) % 2198.72886182" ], [ "G00089VH", "Hex(5)HexNAc(3)NeuAc(2) % 2019.70363329" ], [ "G00090SL", "Hex(2)aldi(1) % 344.13186177" ], [ "G00091RT", "Hex(5) % 828.2746822" ] ] }, "readme": "Name\n - Glycan sequences Byonic\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2021-06-02T12:48:41.483014\n\nModified on\n - 2022-09-26T09:08:12.680882\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in Byonic format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://dev.glycam.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Byonic\n\n Pipeline Steps\n - Step-1: A python script is used to generate the byonic format based on the compositioon for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_masterlist.csv\n Name: monocomp.tsv\n URI: /data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/monocomp.tsv\n Output Subdomain\n Name: glycan_sequences_byonic.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_sequences_byonic.csv\n Name: glycan_sequences_byonic.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_sequences_byonic.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"42847\"\n Name: \"sequence_byonic\"\n Description: \"\"\n Unique Values: \"1793\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/glycan_sequences_byonic.csv" }