{ "bcoid": "GLY_000485", "title": "Rat Proteoform Citations (GlyConnect)", "description": "The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "rat_proteoform_citations_glycosylation_sites_glyconnect.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P08289-1...", "Comparative ..." ], [ "P08289-1...", "Comparative ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G14669DU" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G22768VO" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G72735IY" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G16828VN" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G05724UK" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G04689DA" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G14669DU" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G25323VU" ], [ "P10252-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371", "G14669DU" ], [ "P10252-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371", "G22768VO" ], [ "P05540-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "588", "G14669DU" ], [ "P05540-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "588", "G22768VO" ], [ "", "Swainsonine induces the production of hybrid glycoproteins and accumulation of oligosaccharides in male reproductive tissues of the rat.", "Biology of reproduction", "1990 Jul", "Tulsiani DR, Skudlarek MD, Orgebin-Crist MC", "protein_xref_pubmed", "2118392", "protein_xref_glyconnect", "974", "G14669DU" ], [ "", "Swainsonine induces the production of hybrid glycoproteins and accumulation of oligosaccharides in male reproductive tissues of the rat.", "Biology of reproduction", "1990 Jul", "Tulsiani DR, Skudlarek MD, Orgebin-Crist MC", "protein_xref_pubmed", "2118392", "protein_xref_glyconnect", "974", "G22768VO" ], [ "", "Primary structure of N-linked carbohydrate chains of a human chimeric plasminogen activator K2tu-PA expressed in Chinese hamster ovary cells.", "European journal of biochemistry", "1993 Mar 15", "Bergwerff AA, van Oostrum J, Asselbergs FA, Burgi R, Hokke CH, Kamerling JP, Vliegenthart JF", "protein_xref_pubmed", "8462541", "protein_xref_glyconnect", "None", "G65684NB" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G09921WG" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G23863VK" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G09724ZC" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G66538GV" ], [ "Q62635-1", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380", "G32550BI" ], [ "Q62635-1", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380", "G71165VR" ], [ "", "Primary structure of N-linked carbohydrate chains of a human chimeric plasminogen activator K2tu-PA expressed in Chinese hamster ovary cells.", "European journal of biochemistry", "1993 Mar 15", "Bergwerff AA, van Oostrum J, Asselbergs FA, Burgi R, Hokke CH, Kamerling JP, Vliegenthart JF", "protein_xref_pubmed", "8462541", "protein_xref_glyconnect", "None", "G65431PQ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G52934AK" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G79568CQ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G47012YE" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G18938DW" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G64633BH" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G50045TK" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G11637WL" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G84820NF" ], [ "Q62765-1", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433", "G31596VW" ], [ "Q62765-1", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433", "G27996AZ" ], [ "", "Characterization of novel amino acid fucosides.", "The Journal of biological chemistry", "1981 Aug 10", "Klinger MM, Laine RA, Steiner SM", "protein_xref_pubmed", "7263634", "protein_xref_glyconnect", "48", "G36855WW" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G63889NK" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G90093AU" ], [ "P05540-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "588", "G72735IY" ], [ "P05540-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "588", "G16828VN" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G20425TQ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G20815TK" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G62531KN" ], [ "", "Structure of O-glycosidically linked sugar units from plasma membranes of an ascites hepatoma, AH 66.", "The Journal of biological chemistry", "1982 Apr 10", "Funakoshi I, Yamashina I", "protein_xref_pubmed", "7061510", "protein_xref_glyconnect", "924", "G63628AV" ], [ "", "Structure of O-glycosidically linked sugar units from plasma membranes of an ascites hepatoma, AH 66.", "The Journal of biological chemistry", "1982 Apr 10", "Funakoshi I, Yamashina I", "protein_xref_pubmed", "7061510", "protein_xref_glyconnect", "924", "G03975EI" ], [ "Q62635-1", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "380", "G22355FZ" ], [ "Q62635-1", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "380", "G02856QE" ], [ "P98158-1", "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.", "Glycobiology", "2000 Mar", "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A", "protein_xref_pubmed", "10704528", "protein_xref_glyconnect", "344", "G05724UK" ], [ "P98158-1", "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.", "Glycobiology", "2000 Mar", "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A", "protein_xref_pubmed", "10704528", "protein_xref_glyconnect", "344", "G04689DA" ], [ "", "Intrinsic membrane glycoproteins with cytosol-oriented sugars in the endoplasmic reticulum.", "Proceedings of the National Academy of Sciences of the United States of America", "1988 Feb", "Abeijon C, Hirschberg CB", "protein_xref_pubmed", "3422474", "protein_xref_glyconnect", "5", "G49108TO" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G82420SH" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G23863VK" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G82420SH" ], [ "", "The asparagine-linked sugar chains of the glycoproteins in rat erythrocyte plasma membrane--fractionation of oligosaccharides liberated by hydrazinolysis and structural studies of the neutral oligosaccharides.", "Archives of biochemistry and biophysics", "1982 Sep", "Matsumoto A, Yoshima H, Maeda S, Shiraishi N, Kobata A", "protein_xref_pubmed", "7138033", "protein_xref_glyconnect", "893", "G31544HA" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G59332RZ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G67381VP" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G64527OM" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G30901GC" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G50045TK" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G30901GC" ], [ "", "Transfection with fragments of the adenovirus 12 gene induces tumorigenicity-associated alteration of N-linked sugar chains in rat cells.", "Archives of biochemistry and biophysics", "1990 Jul", "Hiraizumi S, Takasaki S, Shiroki K, Kochibe N, Kobata A", "protein_xref_pubmed", "2353825", "protein_xref_glyconnect", "850", "G23432EQ" ], [ "", "Transfection with fragments of the adenovirus 12 gene induces tumorigenicity-associated alteration of N-linked sugar chains in rat cells.", "Archives of biochemistry and biophysics", "1990 Jul", "Hiraizumi S, Takasaki S, Shiroki K, Kochibe N, Kobata A", "protein_xref_pubmed", "2353825", "protein_xref_glyconnect", "850", "G25481DT" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G06110VR" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G55220VL" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G51367TM" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G33609NS" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G72797UR" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G86357DX" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G99858XP" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G25637MV" ], [ "Q62635-1", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380", "G88908BO" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G72797UR" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G19588HA" ], [ "Q62635-1", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "380", "G12678YV" ], [ "Q62635-1", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380", "G12678YV" ], [ "Q62635-1", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380", "G22355FZ" ], [ "Q62765-1", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433", "G29931IJ" ], [ "Q62765-1", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433", "G76950LE" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G78059CC" ], [ "P02764-1", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18", "G78059CC" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G00395TQ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G31685JQ" ], [ "", "Characterization of novel amino acid fucosides.", "The Journal of biological chemistry", "1981 Aug 10", "Klinger MM, Laine RA, Steiner SM", "protein_xref_pubmed", "7263634", "protein_xref_glyconnect", "47", "G96881BQ" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G70101JE" ], [ "P08289-1", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12", "G98719SR" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G31685JQ" ], [ "", "Structures of the O-linked oligosaccharides of the major cell surface sialoglycoprotein of MAT-B1 and MAT-C1 ascites sublines of the 13762 rat mammary adenocarcinoma.", "The Journal of biological chemistry", "1984 Apr 25", "Hull SR, Laine RA, Kaizu T, Rodriguez I, Carraway KL", "protein_xref_pubmed", "6715325", "protein_xref_glyconnect", "63", "G12396GB" ] ] }, "readme": "Name\n - Rat Proteoform Citations (GlyConnect)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2020-04-28T11:07:38.533264\n\nModified on\n - 2023-03-14T16:40:38.516Z\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: rat_proteoform_citations_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_glyconnect.csv\n Name: rat_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"44\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"15\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"43\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"44\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"44\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"40\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"377\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_glyconnect.csv" }