{
    "bcoid": "GLY_000366",
    "title": "HCV1b Protein Enzyme Annotation (UniProtKB)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Enzyme Annotation (UniProtKB) dataset contains ...",
    "filename": "hcv1b_protein_enzyme_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1b, isolate Japanese)",
        "molecule": "Protein",
        "tags": "enzyme annotation",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "3.6.1.15..."
            ],
            [
                "P26662-1...",
                "2.7.7.48..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "enzyme_ec..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "enzyme_ec"
                },
                {
                    "type": "string",
                    "label": "enzyme_activity"
                }
            ],
            [
                "P26662-1",
                "3.6.1.15",
                "a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-diphosphate + H(+) + phosphate."
            ],
            [
                "P26662-1",
                "2.7.7.48",
                "a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)."
            ],
            [
                "P26662-1",
                "3.4.22.-",
                ""
            ],
            [
                "P26662-1",
                "3.6.4.13",
                "ATP + H2O = ADP + H(+) + phosphate."
            ],
            [
                "P26662-1",
                "3.4.21.98",
                "Hydrolysis of four peptide bonds in the viral precursor polyprotein, commonly with Asp or Glu in the P6 position, Cys or Thr in P1 and Ser or Ala in P1'."
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Enzyme Annotation (UniProtKB)\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2020-03-14T16:18:24.887237\n\nModified on\n   - 2022-09-26T09:05:27.651278\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Enzyme Annotation (UniProtKB) dataset contains hcv1b [taxid:11116] enzyme annotations for UniProtKB canonical accessions. The dataset contains ec numbers and enzyme activity that describes the enzymatic reactions. The dataset is derived form 2019-09 UniprotKB release. If you use this dataset please give proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - enzyme annotation\n   - enzyme \n   - UniProtKB\n   - enzyme activity\n   - EC number\n\n   Pipeline Steps\n   - Step-1: The script extracts the enzyme annotation triples from the triplestore for the UniProtKB canonical sequences and extracts as a dataset in a csv format.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-hepatitis-c-virus-1b.nt\n   Output Subdomain\n      Name: hcv1b_protein_enzyme_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/hcv1b_protein_enzyme_annotation_uniprotkb.csv\n      Name: hcv1b_protein_enzyme_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/hcv1b_protein_enzyme_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"enzyme_ec\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"5\"\n      Name: \"enzyme_activity\"\n     Description: \"The catalytic reaction activity of an enzyme in UniProtKB\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/hcv1b_protein_enzyme_annotation_uniprotkb.csv"
}