{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P35453-1...", "Novel HOXD13..." ], [ "P0C7P3-1...", "SLFN14 mutat..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P35453-1", "Novel HOXD13 variants in syndactyly type 1b and type 1c, and a new spectrum of TP63-related disorders.", "Journal of human genetics", "2022 Jan", "Patel R, Singh SK, Bhattacharya V, Ali A", "protein_xref_pubmed", "34321610", "protein_xref_refseq", "NP_000514" ], [ "P0C7P3-1", "SLFN14 mutations underlie thrombocytopenia with excessive bleeding and platelet secretion defects.", "The Journal of clinical investigation", "2015 Sep", "Fletcher SJ, Johnson B, Lowe GC, Bem D, Drake S, Lordkipanidze M, Guiu IS, Dawood B, Rivera J, Simpson MA, Daly ME, Motwani J, Collins PW, Watson SP, Morgan NV", "protein_xref_pubmed", "26280575", "protein_xref_refseq", "NP_001123292" ], [ "Q8N7H5-1", "SUMO Modification of PAF1/PD2 Enables PML Interaction and Promotes Radiation Resistance in Pancreatic Ductal Adenocarcinoma.", "Molecular and cellular biology", "2021 Nov 22", "Rauth S, Karmakar S, Shah A, Seshacharyulu P, Nimmakayala RK, Ganguly K, Bhatia R, Muniyan S, Kumar S, Dutta S, Lin C, Datta K, Batra SK, Ponnusamy MP", "protein_xref_pubmed", "34570619", "protein_xref_refseq", "NP_001243755" ], [ "Q9BVV6-1", "The CP110-interacting proteins Talpid3 and Cep290 play overlapping and distinct roles in cilia assembly.", "The Journal of cell biology", "2014 Jan 20", "Kobayashi T, Kim S, Lin YC, Inoue T, Dynlacht BD", "protein_xref_pubmed", "24421332", "protein_xref_refseq", "NP_001231118" ], [ "Q8TET4-1", "Computer assisted cloning of human neutral alpha-glucosidase C (GANC): a new paralog in the glycosyl hydrolase gene family 31.", "Proceedings of the National Academy of Sciences of the United States of America", "2002 Oct 15", "Hirschhorn R, Huie ML, Kasper JS", "protein_xref_pubmed", "12370436", "protein_xref_refseq", "NP_937784" ], [ "O75953-3", "Critical role of zebrafish dnajb5 in myocardial proliferation and regeneration.", "Journal of genetics and genomics = Yi chuan xue bao", "2020 Aug", "Pang M, Xiong C, Xiao C, Du J, Zheng L, Bai L, Zhu X, Xiong JW", "protein_xref_pubmed", "33191150", "protein_xref_refseq", "NP_001128476" ], [ "O60609-1", "Expression of GFRalpha3 correlates with tumor progression and promotes cell metastasis in urothelial carcinoma.", "Minerva urologica e nefrologica = The Italian journal of urology and nephrology", "2018 Feb", "Yan Y, Li MN, Yang B, Geng J, Zheng JH, Yao XD", "protein_xref_pubmed", "28651425", "protein_xref_refseq", "NP_001487" ], [ "Q92824-1", "Osteopontin as a novel substrate for the proprotein convertase 5/6 (PCSK5) in bone.", "Bone", "2018 Feb", "Hoac B, Susan-Resiga D, Essalmani R, Marcinkiweicz E, Seidah NG, McKee MD", "protein_xref_pubmed", "29126984", "protein_xref_refseq", "NP_001177411" ], [ "O14684-1", "Microsomal prostaglandin E synthase-1 is a critical factor in dopaminergic neurodegeneration in Parkinson's disease.", "Neurobiology of disease", "2019 Apr", "Ikeda-Matsuo Y, Miyata H, Mizoguchi T, Ohama E, Naito Y, Uematsu S, Akira S, Sasaki Y, Tanabe M", "protein_xref_pubmed", "30423474", "protein_xref_refseq", "NP_004869" ], [ "P62081-1", "Kinase PIM1 promotes prostate cancer cell growth via c-Myc-RPS7-driven ribosomal stress.", "Carcinogenesis", "2019 Mar 12", "Zhang C, Qie Y, Yang T, Wang L, Du E, Liu Y, Xu Y, Qiao B, Zhang Z", "protein_xref_pubmed", "30247545", "protein_xref_refseq", "NP_001002" ], [ "Q14978-1", "Nucleolar TRF2 attenuated nucleolus stress-induced HCC cell-cycle arrest by altering rRNA synthesis.", "Cell death & disease", "2018 May 1", "Yuan F, Xu C, Li G, Tong T", "protein_xref_pubmed", "29725012", "protein_xref_refseq", "NP_001271317" ], [ "P60468-1", "Sec61beta facilitates the maintenance of endoplasmic reticulum homeostasis by associating microtubules.", "Protein & cell", "2018 Jul", "Zhu Y, Zhang G, Lin S, Shi J, Zhang H, Hu J", "protein_xref_pubmed", "29168059", "protein_xref_refseq", "NP_006799" ], [ "P14735-1", "Exploring the Structural Rearrangements of the Human Insulin-Degrading Enzyme through Molecular Dynamics Simulations.", "International journal of molecular sciences", "2022 Feb 3", "Ghoula M, Janel N, Camproux AC, Moroy G", "protein_xref_pubmed", "35163673", "protein_xref_refseq", "NP_001159418" ], [ "P14780-1", "Up-regulation of matrix metalloproteinase-9 in primary bone tumors and its association with tumor aggressiveness.", "Molecular biology reports", "2022 Oct", "Vaezi MA, Eghtedari AR, Safizadeh B, Ghasempour G, Salimi V, Nourbakhsh M, Nazem S, Tavakoli-Yaraki M", "protein_xref_pubmed", "36002655", "protein_xref_refseq", "NP_004985" ], [ "P28290-1", "Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells.", "Journal of human genetics", "2004", "Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T, Shirasawa S", "protein_xref_pubmed", "14673706", "protein_xref_refseq", "NP_001274432" ], [ "P33681-1", "Cryptic association of B7-2 molecules and its implication for clustering.", "Protein science : a publication of the Protein Society", "2021 Sep", "Lankipalli S, H S MS, Selvam D, Samanta D, Nair D, Ramagopal UA", "protein_xref_pubmed", "34191384", "protein_xref_refseq", "NP_005182" ], [ "O14647-1", "Regulation of human cortical interneuron development by the chromatin remodeling protein CHD2.", "Scientific reports", "2022 Sep 17", "Lewis EMA, Chapman G, Kaushik K, Determan J, Antony I, Meganathan K, Narasimhan M, Gontarz P, Zhang B, Kroll KL", "protein_xref_pubmed", "36115870", "protein_xref_refseq", "NP_001036037" ], [ "Q9H267-1", "Comparative evolutionary analysis of VPS33 homologues: genetic and functional insights.", "Human molecular genetics", "2005 May 15", "Gissen P, Johnson CA, Gentle D, Hurst LD, Doherty AJ, O'Kane CJ, Kelly DA, Maher ER", "protein_xref_pubmed", "15790593", "protein_xref_refseq", "NP_001276077" ], [ "Q7Z7A4-1", "Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy.", "Science signaling", "2015 Apr 7", "So J, Pasculescu A, Dai AY, Williton K, James A, Nguyen V, Creixell P, Schoof EM, Sinclair J, Barrios-Rodiles M, Gu J, Krizus A, Williams R, Olhovsky M, Dennis JW, Wrana JL, Linding R, Jorgensen C, Pawson T, Colwill K", "protein_xref_pubmed", "25852190", "protein_xref_refseq", "NP_001276029" ], [ "P58062-1", "ECRG2, a novel candidate of tumor suppressor gene in the esophageal carcinoma, interacts directly with metallothionein 2A and links to apoptosis.", "Biochemical and biophysical research communications", "2003 Mar 21", "Cui Y, Wang J, Zhang X, Lang R, Bi M, Guo L, Lu SH", "protein_xref_pubmed", "12646258", "protein_xref_refseq", "NP_115955" ], [ "Q9NR71-1", "Neutral ceramidase: Advances in mechanisms, cell regulation, and roles in cancer.", "Advances in biological regulation", "2019 Jan", "Coant N, Hannun YA", "protein_xref_pubmed", "30389354", "protein_xref_refseq", "NP_001137446" ], [ "O15552-1", "Microbiota-derived short chain fatty acid promotion of Amphiregulin expression by dendritic cells is regulated by GPR43 and Blimp-1.", "Biochemical and biophysical research communications", "2020 Dec 10", "Xiu W, Chen Q, Wang Z, Wang J, Zhou Z", "protein_xref_pubmed", "32958255", "protein_xref_refseq", "NP_005297" ], [ "Q96AX2-1", "RAB37 Hypermethylation Regulates Metastasis and Resistance to Docetaxel-Based Induction Chemotherapy in Nasopharyngeal Carcinoma.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2018 Dec 15", "Li Y, Yang X, Du X, Lei Y, He Q, Hong X, Tang X, Wen X, Zhang P, Sun Y, Zhang J, Wang Y, Ma J, Liu N", "protein_xref_pubmed", "30131385", "protein_xref_refseq", "NP_001006639" ], [ "Q96K19-1", "Bi-allelic variants in RNF170 are associated with hereditary spastic paraplegia.", "Nature communications", "2019 Oct 21", "Wagner M, Osborn DPS, Gehweiler I, Nagel M, Ulmer U, Bakhtiari S, Amouri R, Boostani R, Hentati F, Hockley MM, Holbling B, Schwarzmayr T, Karimiani EG, Kernstock C, Maroofian R, Muller-Felber W, Ozkan E, Padilla-Lopez S, Reich S, Reichbauer J, Darvish H, Shahmohammadibeni N, Tafakhori A, Vill K, Zuchner S, Kruer MC, Winkelmann J, Jamshidi Y, Schule R", "protein_xref_pubmed", "31636353", "protein_xref_refseq", "NP_001153695" ], [ "P55344-1", "A recurrent variant in LIM2 causes an isolated congenital sutural/lamellar cataract in a Japanese family.", "Ophthalmic genetics", "2022 Oct", "Berry V, Fujinami K, Mochizuki K, Iwata T, Pontikos N, Quinlan RA, Michaelides M", "protein_xref_pubmed", "35736209", "protein_xref_refseq", "NP_001155220" ], [ "Q9NSV4-3", "Diaph3 underlines tumor cell heterogeneity in glioblastoma with implications for treatment modalities resistance.", "Journal of neuro-oncology", "2022 May", "Stoyanov GS, Lyutfi E, Georgieva R, Georgiev R, Dzhenkov D, Petkova L, Ivanov BD, Kaprelyan A, Ghenev P", "protein_xref_pubmed", "35380294", "protein_xref_refseq", "NP_001035982" ], [ "O95864-1", "Association of placental fatty acid desaturase 2 (FADS2) methylation with maternal fatty acid levels in women with preeclampsia.", "Prostaglandins, leukotrienes, and essential fatty acids", "2022 Sep", "Dave K, Kaur L, Sundrani D, Sharma P, Bayyana S, Mehendale S, Randhir K, Chandak GR, Joshi S", "protein_xref_pubmed", "35872376", "protein_xref_refseq", "NP_001268430" ], [ "P12268-1", "Genetic variants in the glucocorticoid pathway genes and birth weight.", "Archives of gynecology and obstetrics", "2021 Feb", "Schneider MO, Hubner T, Pretscher J, Goecke TW, Schwitulla J, Haberle L, Kornhuber J, Ekici AB, Beckmann MW, Fasching PA, Schwenke E", "protein_xref_pubmed", "32886236", "protein_xref_refseq", "NP_000875" ], [ "Q06828-1", "FMOD expression in whole blood aids in distinguishing between chronic lymphocytic leukemia and other leukemic lymphoproliferative disorders. A pilot study.", "Cytometry. Part B, Clinical cytometry", "2020 Sep", "Sorigue M, Junca J, Ferra C, Marce S, Ruiz-Xiville N, Pinyol L, Cabezon M, Espasa A, Dominguez D, Lopez-Viaplana L, Ruiz R, Buch J, Plensa E, Mostacedo SZ, Aranda J, Vergara S, Raya M, Granada I, Tapia G, Navarro JT, Bea S, Zamora L", "protein_xref_pubmed", "32530577", "protein_xref_refseq", "NP_002014" ], [ "Q9NY12-1", "SUMOylation- and GAR1-Dependent Regulation of Dyskerin Nuclear and Subnuclear Localization.", "Molecular and cellular biology", "2021 Mar 24", "MacNeil DE, Lambert-Lanteigne P, Qin J, McManus FP, Bonneil E, Thibault P, Autexier C", "protein_xref_pubmed", "33526451", "protein_xref_refseq", "NP_061856" ], [ "P13584-1", "Characterization of an Additional Splice Acceptor Site Introduced into CYP4B1 in Hominoidae during Evolution.", "PloS one", "2015", "Schmidt EM, Wiek C, Parkinson OT, Roellecke K, Freund M, Gombert M, Lottmann N, Steward CA, Kramm CM, Yarov-Yarovoy V, Rettie AE, Hanenberg H", "protein_xref_pubmed", "26355749", "protein_xref_refseq", "NP_000770" ], [ "P03372-1", "Upstream open reading frames regulate the translation of the multiple mRNA variants of the estrogen receptor alpha.", "The Journal of biological chemistry", "2002 Oct 4", "Kos M, Denger S, Reid G, Gannon F", "protein_xref_pubmed", "12147702", "protein_xref_refseq", "NP_000116" ], [ "Q9C0G0-1", "Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.", "American journal of human genetics", "2009 Nov", "Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD", "protein_xref_pubmed", "19913121", "protein_xref_refseq", "NP_001139661" ], [ "P62854-1", "The final step of 40S ribosomal subunit maturation is controlled by a dual key lock.", "eLife", "2021 Apr 28", "Plassart L, Shayan R, Montellese C, Rinaldi D, Larburu N, Pichereaux C, Froment C, Lebaron S, O'Donohue MF, Kutay U, Marcoux J, Gleizes PE, Plisson-Chastang C", "protein_xref_pubmed", "33908345", "protein_xref_refseq", "NP_001020" ], [ "Q96EK7-1", "San1 deficiency leads to cardiomyopathy due to excessive R-loop-associated DNA damage and cardiomyocyte hypoplasia.", "Biochimica et biophysica acta. Molecular basis of disease", "2021 Nov 1", "Liu Z, Gao X, Zhou Z, Kang SW, Yang Y, Liu H, Zhang C, Wen Z, Rao X, Wang D, White D 3rd, Yang Q, Long Q", "protein_xref_pubmed", "34339838", "protein_xref_refseq", "NP_001273308" ], [ "Q04727-1", "Polymorphisms of TGFB1, TLE4 and MUC22 are associated with childhood asthma in Chinese population.", "Allergologia et immunopathologia", "2017 Sep - Oct", "Chen JB, Zhang J, Hu HZ, Xue M, Jin YJ", "protein_xref_pubmed", "28262390", "protein_xref_refseq", "NP_001269677" ], [ "Q8NG31-1", "Characterization of the MLL partner gene AF15q14 involved in t(11;15)(q23;q14).", "Oncogene", "2003 Mar 6", "Kuefer MU, Chinwalla V, Zeleznik-Le NJ, Behm FG, Naeve CW, Rakestraw KM, Mukatira ST, Raimondi SC, Morris SW", "protein_xref_pubmed", "12618768", "protein_xref_refseq", "NP_653091" ], [ "Q96P63-1", "Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation.", "Journal of molecular graphics & modelling", "2019 Jul", "Chen J, Kuhn LA", "protein_xref_pubmed", "31026779", "protein_xref_refseq", "NP_001294857" ], [ "Q9UIH9-1", "Transcription factor KLF15 inhibits the proliferation and migration of gastric cancer cells via regulating the TFAP2A-AS1/NISCH axis.", "Biology direct", "2021 Nov 3", "Zhao X, Chen L, Wu J, You J, Hong Q, Ye F", "protein_xref_pubmed", "34727954", "protein_xref_refseq", "NP_054798" ], [ "Q92786-1", "Prox1 is differentially localized during lens development.", "Mechanisms of development", "2002 Mar", "Duncan MK, Cui W, Oh DJ, Tomarev SI", "protein_xref_pubmed", "11850194", "protein_xref_refseq", "NP_001257545" ], [ "O76050-1", "Fe65 negatively regulates Jagged1 signaling by decreasing Jagged1 protein stability through the E3 ligase Neuralized-like 1.", "Biochimica et biophysica acta", "2015 Nov", "Lee HJ, Yoon JH, Ahn JS, Jo EH, Kim MY, Lee YC, Kim JW, Ann EJ, Park HS", "protein_xref_pubmed", "26276215", "protein_xref_refseq", "NP_004201" ], [ "O95267-1", "Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity.", "European journal of immunology", "2021 Feb", "Baars MJD, Douma T, Simeonov DR, Myers DR, Kulhanek K, Banerjee S, Zwakenberg S, Baltissen MP, Amini M, de Roock S, van Wijk F, Vermeulen M, Marson A, Roose JP, Vercoulen Y", "protein_xref_pubmed", "33065764", "protein_xref_refseq", "NP_001122074" ], [ "Q00341-1", "TSC2 Interacts with HDLBP/Vigilin and Regulates Stress Granule Formation.", "Molecular cancer research : MCR", "2021 Aug", "Kosmas K, Filippakis H, Khabibullin D, Turkiewicz M, Lam HC, Yu J, Kedersha NL, Anderson PJ, Henske EP", "protein_xref_pubmed", "33888601", "protein_xref_refseq", "NP_001307894" ], [ "Q86YT5-1", "Human Na+ -coupled citrate transporter: primary structure, genomic organization, and transport function.", "Biochemical and biophysical research communications", "2002 Dec 6", "Inoue K, Zhuang L, Ganapathy V", "protein_xref_pubmed", "12445824", "protein_xref_refseq", "NP_001137310" ], [ "Q9UQN3-1", "The ESCRT-III isoforms CHMP2A and CHMP2B display different effects on membranes upon polymerization.", "BMC biology", "2021 Apr 8", "Alqabandi M, de Franceschi N, Maity S, Miguet N, Bally M, Roos WH, Weissenhorn W, Bassereau P, Mangenot S", "protein_xref_pubmed", "33832485", "protein_xref_refseq", "NP_001231573" ], [ "Q13239-1", "Intracellular cytoplasm-specific delivery of SH3 and SH2 domains of SLAP inhibits TcR-mediated signaling.", "Biochemical and biophysical research communications", "2015 May 8", "Kim JH, Moon JS, Yu J, Lee SK", "protein_xref_pubmed", "25800872", "protein_xref_refseq", "NP_001039021" ], [ "P59095-1", "The StarD4 subfamily of steroidogenic acute regulatory-related lipid transfer (START) domain proteins: new players in cholesterol metabolism.", "The international journal of biochemistry & cell biology", "2014 Apr", "Calderon-Dominguez M, Gil G, Medina MA, Pandak WM, Rodriguez-Agudo D", "protein_xref_pubmed", "24440759", "protein_xref_refseq", "NP_631910" ], [ "Q9UK53-1", "miR-24-3p promotes colon cancer progression by targeting ING1.", "Signal transduction and targeted therapy", "2020 Aug 25", "Gao Z, Zhou L, Hua S, Wu H, Luo L, Li L, Wang S, Liu Y, Zhou Z, Chen X", "protein_xref_pubmed", "32843621", "protein_xref_refseq", "NP_001254657" ], [ "Q9Y3E5-1", "Bit1-a novel regulator of astrocyte function during retinal development: proliferation, migration, and paracrine effects on vascular endothelial cell.", "Human cell", "2019 Oct", "Liu Y, Ji J, Shao W, Luo M, Ma B", "protein_xref_pubmed", "31368047", "protein_xref_refseq", "NP_001015509" ], [ "Q9NY25-1", "CLEC5A: A Promiscuous Pattern Recognition Receptor to Microbes and Beyond.", "Advances in experimental medicine and biology", "2020", "Sung PS, Chang WC, Hsieh SL", "protein_xref_pubmed", "32152943", "protein_xref_refseq", "NP_037384" ], [ "Q5BKU9-1", "Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.", "PloS one", "2010 Sep 21", "Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ", "protein_xref_pubmed", "20877624", "protein_xref_refseq", "NP_001291924" ], [ "A0PJK1-1", "Functional characterisation of human SGLT-5 as a novel kidney-specific sodium-dependent sugar transporter.", "FEBS letters", "2012 Feb 3", "Grempler R, Augustin R, Froehner S, Hildebrandt T, Simon E, Mark M, Eickelmann P", "protein_xref_pubmed", "22212718", "protein_xref_refseq", "NP_001035915" ], [ "Q96L91-1", "TIP60/P400/H4K12ac Plays a Role as a Heterochromatin Back-up Skeleton in Breast Cancer.", "Cancer genomics & proteomics", "2020 Nov-Dec", "Idrissou M, Boisnier T, Sanchez A, Khoufaf FZH, Penault-Llorca F, Bignon YJ, Bernard-Gallon D", "protein_xref_pubmed", "33099470", "protein_xref_refseq", "NP_056224" ], [ "Q96RG2-1", "Involvement of Per-Arnt-Sim (PAS) kinase in the stimulation of preproinsulin and pancreatic duodenum homeobox 1 gene expression by glucose.", "Proceedings of the National Academy of Sciences of the United States of America", "2004 Jun 1", "da Silva Xavier G, Rutter J, Rutter GA", "protein_xref_pubmed", "15148392", "protein_xref_refseq", "NP_001239048" ], [ "P08700-1", "Astrocytic interleukin-3 programs microglia and limits Alzheimer's disease.", "Nature", "2021 Jul", "McAlpine CS, Park J, Griciuc A, Kim E, Choi SH, Iwamoto Y, Kiss MG, Christie KA, Vinegoni C, Poller WC, Mindur JE, Chan CT, He S, Janssen H, Wong LP, Downey J, Singh S, Anzai A, Kahles F, Jorfi M, Feruglio PF, Sadreyev RI, Weissleder R, Kleinstiver BP, Nahrendorf M, Tanzi RE, Swirski FK", "protein_xref_pubmed", "34262178", "protein_xref_refseq", "NP_000579" ], [ "P23582-1", "A novel variant of NPPC causes abnormal post-translational cleavage: A candidate gene for premature ovarian insufficiency.", "Maturitas", "2022 Mar", "Park JY, Go M, Lyu SW, Yoon TK, Kang KM, Kim JW, Shim SH", "protein_xref_pubmed", "35120671", "protein_xref_refseq", "NP_077720" ], [ "O95136-1", "Increased S1P induces S1PR2 internalization to blunt the sensitivity of colorectal cancer to 5-fluorouracil via promoting intracellular uracil generation.", "Acta pharmacologica Sinica", "2021 Mar", "Zhang YH, Cui SX, Wan SB, Wu SH, Qu XJ", "protein_xref_pubmed", "32647340", "protein_xref_refseq", "NP_004221" ], [ "O94886-1", "Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.", "American journal of human genetics", "2009 Nov", "Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD", "protein_xref_pubmed", "19913121", "protein_xref_refseq", "NP_055513" ], [ "Q9NRF8-1", "Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer.", "Cancer biology & therapy", "2011 Mar 15", "Tan WL, Bhattacharya B, Loh M, Balasubramanian I, Akram M, Dong D, Wong L, Thakkar B, Salto-Tellez M, Soo RA, Fichtner I, Iacopetta B, Soong R", "protein_xref_pubmed", "21378502", "protein_xref_refseq", "NP_001137474" ], [ "Q9BUR4-1", "Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway.", "Carcinogenesis", "2008 Oct", "Hosgood HD 3rd, Menashe I, Shen M, Yeager M, Yuenger J, Rajaraman P, He X, Chatterjee N, Caporaso NE, Zhu Y, Chanock SJ, Zheng T, Lan Q", "protein_xref_pubmed", "18676680", "protein_xref_refseq", "NP_001137462" ], [ "O75807-1", "An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation.", "The Journal of biological chemistry", "2009 Mar 13", "Lee YY, Cevallos RC, Jan E", "protein_xref_pubmed", "19131336", "protein_xref_refseq", "NP_055145" ], [ "O95155-1", "The MPAC domain is a novel mitotically regulated domain, removed by apoptotic protease cleavage during cell death.", "Biochemical and biophysical research communications", "2006 Sep 8", "Spinette S, Mahoney JA, Rosen A", "protein_xref_pubmed", "16870146", "protein_xref_refseq", "NP_001099032" ], [ "Q49AH0-1", "Cerebral dopamine neurotrophic factor reduces alpha-synuclein aggregation and propagation and alleviates behavioral alterations in vivo.", "Molecular therapy : the journal of the American Society of Gene Therapy", "2021 Sep 1", "Albert K, Raymundo DP, Panhelainen A, Eesmaa A, Shvachiy L, Araujo GR, Chmielarz P, Yan X, Singh A, Cordeiro Y, Palhano FL, Foguel D, Luk KC, Domanskyi A, Voutilainen MH, Huttunen HJ, Outeiro TF, Saarma M, Almeida MS, Airavaara M", "protein_xref_pubmed", "33940158", "protein_xref_refseq", "NP_001025125" ], [ "Q9NQG6-1", "Human MIEF1 recruits Drp1 to mitochondrial outer membranes and promotes mitochondrial fusion rather than fission.", "The EMBO journal", "2011 Jun 24", "Zhao J, Liu T, Jin S, Wang X, Qu M, Uhlen P, Tomilin N, Shupliakov O, Lendahl U, Nister M", "protein_xref_pubmed", "21701560", "protein_xref_refseq", "NP_001291493" ], [ "Q9NNZ3-1", "New genetic associations detected in a host response study to hepatitis B vaccine.", "Genes and immunity", "2010 Apr", "Davila S, Froeling FE, Tan A, Bonnard C, Boland GJ, Snippe H, Hibberd ML, Seielstad M", "protein_xref_pubmed", "20237496", "protein_xref_refseq", "NP_001294909" ], [ "Q13972-1", "RASGRF1-rearranged Cutaneous Melanocytic Neoplasms With Spitzoid Cytomorphology: A Clinicopathologic and Genetic Study of 3 Cases.", "The American journal of surgical pathology", "2022 May 1", "Goto K, Pissaloux D, Fraitag S, Amini M, Vaucher R, Tirode F, de la Fouchardiere A", "protein_xref_pubmed", "34799483", "protein_xref_refseq", "NP_002882" ], [ "Q8N6Y1-1", "PCDH20 functions as a tumour-suppressor gene through antagonizing the Wnt/beta-catenin signalling pathway in hepatocellular carcinoma.", "Journal of viral hepatitis", "2015 Feb", "Lv J, Zhu P, Yang Z, Li M, Zhang X, Cheng J, Chen X, Lu F", "protein_xref_pubmed", "24910204", "protein_xref_refseq", "NP_073754" ], [ "Q9NRY4-1", "Ubiquitin ligase TRIM65 promotes colorectal cancer metastasis by targeting ARHGAP35 for protein degradation.", "Oncogene", "2019 Sep", "Chen D, Li Y, Zhang X, Wu H, Wang Q, Cai J, Cui Y, Liu H, Lan P, Wang J, Yang Z, Wang L", "protein_xref_pubmed", "31332286", "protein_xref_refseq", "NP_004482" ], [ "P12235-1", "Site-specific acetylation of adenine nucleotide translocase 1 at lysine 23 in human muscle.", "Analytical biochemistry", "2021 Oct 1", "Finlayson J, Barakati N, Langlais PR, Funk J, Zapata Bustos R, Coletta DK, Luo M, Willis WT, Mandarino LJ", "protein_xref_pubmed", "34332952", "protein_xref_refseq", "NP_001142" ], [ "Q5SW96-1", "Effects of familial hypercholesterolemia-associated genes on the phenotype of premature myocardial infarction.", "Lipids in health and disease", "2019 Apr 11", "Lee C, Cui Y, Song J, Li S, Zhang F, Wu M, Li L, Hu D, Chen H", "protein_xref_pubmed", "30971288", "protein_xref_refseq", "NP_056442" ], [ "Q14160-1", "Human scribble (Vartul) is targeted for ubiquitin-mediated degradation by the high-risk papillomavirus E6 proteins and the E6AP ubiquitin-protein ligase.", "Molecular and cellular biology", "2000 Nov", "Nakagawa S, Huibregtse JM", "protein_xref_pubmed", "11027293", "protein_xref_refseq", "NP_874365" ], [ "Q9C026-1", "TRIM9 overexpression promotes uterine leiomyoma cell proliferation and inhibits cell apoptosis via NF-kappaB signaling pathway.", "Life sciences", "2020 Sep 15", "Yang F, Liu H, Yu Y, Xu L", "protein_xref_pubmed", "32679146", "protein_xref_refseq", "NP_055978" ], [ "P20749-1", "PCAT1 induced by transcription factor YY1 promotes cholangiocarcinoma proliferation, migration and invasion by sponging miR-216a-3p to up-regulate oncogene BCL3.", "Biological chemistry", "2021 Jan 27", "Sun D, Zhao Y, Wang W, Guan C, Hu Z, Liu L, Jiang X", "protein_xref_pubmed", "33544468", "protein_xref_refseq", "NP_005169" ], [ "O43462-1", "MBTPS2, a membrane bound protease, underlying several distinct skin and bone disorders.", "Journal of translational medicine", "2021 Mar 20", "Caengprasath N, Theerapanon T, Porntaveetus T, Shotelersuk V", "protein_xref_pubmed", "33743732", "protein_xref_refseq", "NP_056968" ], [ "Q96JL9-1", "Characterization of ZNF333, a novel double KRAB domain containing zinc finger gene on human chromosome 19p13.1.", "Biochimica et biophysica acta", "2002 Aug 19", "Tian Y, Breedveld GJ, Huang S, Oostra BA, Heutink P, Lo WH", "protein_xref_pubmed", "12151103", "protein_xref_refseq", "NP_001287841" ], [ "P41240-1", "Depletion of Csk preferentially reduces the protein level of LynA in a Cbl-dependent manner in cancer cells.", "Scientific reports", "2020 May 6", "Kuga T, Yamane Y, Hayashi S, Taniguchi M, Yamaguchi N, Yamagishi N", "protein_xref_pubmed", "32376886", "protein_xref_refseq", "NP_001120662" ], [ "Q9BRD0-1", "A polygenic basis for four classical Fredrickson hyperlipoproteinemia phenotypes that are characterized by hypertriglyceridemia.", "Human molecular genetics", "2009 Nov 1", "Hegele RA, Ban MR, Hsueh N, Kennedy BA, Cao H, Zou GY, Anand S, Yusuf S, Huff MW, Wang J", "protein_xref_pubmed", "19656773", "protein_xref_refseq", "NP_001153208" ], [ "O15519-1", "cFLIP downregulation is an early event required for endoplasmic reticulum stress-induced apoptosis in tumor cells.", "Cell death & disease", "2022 Feb 3", "Mora-Molina R, Stohr D, Rehm M, Lopez-Rivas A", "protein_xref_pubmed", "35115486", "protein_xref_refseq", "NP_001294972" ], [ "Q92520-1", "Transcriptional downregulation of FAM3C/ILEI in the Alzheimer's brain.", "Human molecular genetics", "2021 Dec 17", "Watanabe N, Nakano M, Mitsuishi Y, Hara N, Mano T, Iwata A, Murayama S, Suzuki T, Ikeuchi T, Nishimura M", "protein_xref_pubmed", "34378027", "protein_xref_refseq", "NP_001035109" ], [ "O95319-1", "LncRNA RHPN1-AS1 promotes the progression of nasopharyngeal carcinoma by targeting CELF2 expression.", "Experimental and molecular pathology", "2021 Oct", "Zhao Y, Zhou H, Dong W", "protein_xref_pubmed", "34358519", "protein_xref_refseq", "NP_001313271" ], [ "O43665-3", "Experimental colitis promotes sustained, sex-dependent, T-cell-associated neuroinflammation and parkinsonian neuropathology.", "Acta neuropathologica communications", "2021 Aug 19", "Houser MC, Caudle WM, Chang J, Kannarkat GT, Yang Y, Kelly SD, Oliver D, Joers V, Shannon KM, Keshavarzian A, Tansey MG", "protein_xref_pubmed", "34412704", "protein_xref_refseq", "NP_001005339" ], [ "Q99467-1", "CD150 and CD180 are negative regulators of IL-10 expression and secretion in chronic lymphocytic leukemia B cells.", "Neoplasma", "2021 Jul", "Shcherbina V, Gordiienko I, Shlapatska L, Gluzman D, Sidorenko S", "protein_xref_pubmed", "33904315", "protein_xref_refseq", "NP_005573" ], [ "P17516-1", "Polymorphisms in AKR1C4 and HSD3B2 and differences in serum DHEAS and progesterone are associated with paranoid ideation during mania or hypomania in bipolar disorder.", "European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology", "2012 Sep", "Johansson AG, Nikamo P, Schalling M, Landen M", "protein_xref_pubmed", "22356824", "protein_xref_refseq", "NP_001809" ], [ "Q9Y6C9-1", "The modified mitochondrial outer membrane carrier MTCH2 links mitochondrial fusion to lipogenesis.", "The Journal of cell biology", "2021 Nov 1", "Labbe K, Mookerjee S, Le Vasseur M, Gibbs E, Lerner C, Nunnari J", "protein_xref_pubmed", "34586346", "protein_xref_refseq", "NP_001304160" ] ] }, "readme": "Name\n - Human Protein Citations (RefSeq)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-09-06T14:06:38.983152\n\nModified on\n - 2022-09-26T09:04:47.995186\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n Name: human_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_function_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"15969\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"57523\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2534\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"5647\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"57294\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"57527\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"17961\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/human_protein_citations_refseq.csv" }