{ "bcoid": "GLY_000252", "title": "Mouse Gene Ontology (GO)", "description": "The Mouse Gene Ontology (GO) dataset contains mouse [taxid:10090] Gene Ontology Id and name, categories ...", "filename": "mouse_protein_go_annotation.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Gene Ontology (Go)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "Tm9sf4..." ], [ "Q8BH24-1...", "Tm9sf4..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "go_term_id" }, { "type": "string", "label": "go_term_label" }, { "type": "string", "label": "go_term_category" }, { "type": "string", "label": "eco_id" }, { "type": "string", "label": "pmid" } ], [ "Q8BH24-1", "Tm9sf4", "GO_0005769", "early endosome", "cellular_component", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0005794", "Golgi apparatus", "cellular_component", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0007155", "cell adhesion", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_2000010", "positive regulation of protein localization to cell surface", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0001666", "response to hypoxia", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0006909", "phagocytosis", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0072657", "protein localization to membrane", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0070072", "vacuolar proton-transporting V-type ATPase complex assembly", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0051453", "regulation of intracellular pH", "biological_process", "", "" ], [ "Q8BH24-1", "Tm9sf4", "GO_0070863", "positive regulation of protein exit from endoplasmic reticulum", "biological_process", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0016477", "cell migration", "biological_process", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0009887", "animal organ morphogenesis", "biological_process", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0034446", "substrate adhesion-dependent cell spreading", "biological_process", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0005604", "basement membrane", "cellular_component", "", "" ], [ "Q8BH27-1", "Megf9", "GO_0009888", "tissue development", "biological_process", "", "" ], [ "Q8BH26-1", "Lyset", "GO_0005794", "Golgi apparatus", "cellular_component", "", "" ], [ "Q8BH26-1", "Lyset", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0001701", "in utero embryonic development", "biological_process", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0004175", "endopeptidase activity", "molecular_function", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0004222", "metalloendopeptidase activity", "molecular_function", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0005615", "extracellular space", "cellular_component", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0016485", "protein processing", "biological_process", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0030198", "extracellular matrix organization", "biological_process", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0031012", "extracellular matrix", "cellular_component", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0008233", "peptidase activity", "molecular_function", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0010573", "vascular endothelial growth factor production", "biological_process", "", "" ], [ "E9Q287-1", "Adamts3", "GO_0032964", "collagen biosynthetic process", "biological_process", "", "" ], [ "E9Q287-1", "Adamts3", "GO_1900748", "positive regulation of vascular endothelial growth factor signaling pathway", "biological_process", "", "" ], [ "Q922G0-1", "Slc25a36", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0140036", "ubiquitin-dependent protein binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0010992", "ubiquitin recycling", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0031597", "cytosolic proteasome complex", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0031626", "beta-endorphin binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_1901142", "insulin metabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0004175", "endopeptidase activity", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0004222", "metalloendopeptidase activity", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005524", "ATP binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005615", "extracellular space", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005634", "nucleus", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005737", "cytoplasm", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005739", "mitochondrion", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005777", "peroxisome", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005782", "peroxisomal matrix", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0005829", "cytosol", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0006508", "proteolysis", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0006979", "response to oxidative stress", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0008270", "zinc ion binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0009986", "cell surface", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0016323", "basolateral plasma membrane", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0031904", "endosome lumen", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0032092", "positive regulation of protein binding", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0042802", "identical protein binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0042803", "protein homodimerization activity", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0050435", "amyloid-beta metabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0070062", "extracellular exosome", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0001540", "amyloid-beta binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0009897", "external side of plasma membrane", "cellular_component", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0016887", "ATP hydrolysis activity", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0042447", "hormone catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0043171", "peptide catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0044877", "protein-containing complex binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0017046", "peptide hormone binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0019885", "antigen processing and presentation of endogenous peptide antigen via MHC class I", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_1903715", "regulation of aerobic respiration", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0042277", "peptide binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0030163", "protein catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0045861", "negative regulation of proteolysis", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0051603", "proteolysis involved in protein catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0010815", "bradykinin catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_1901143", "insulin catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0008340", "determination of adult lifespan", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0043559", "insulin binding", "molecular_function", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0097242", "amyloid-beta clearance", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0150094", "amyloid-beta clearance by cellular catabolic process", "biological_process", "", "" ], [ "Q9JHR7-1", "Ide", "GO_0038020", "insulin receptor recycling", "biological_process", "", "" ], [ "Q80T32-1", "Adgrd1", "GO_0004930", "G protein-coupled receptor activity", "molecular_function", "", "" ], [ "Q80T32-1", "Adgrd1", "GO_0007166", "cell surface receptor signaling pathway", "biological_process", "", "" ], [ "Q80T32-1", "Adgrd1", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "Q80T32-1", "Adgrd1", "GO_0022008", "neurogenesis", "biological_process", "", "" ], [ "B2RXV4-1", "Flvcr1", "GO_0060323", "head morphogenesis", "biological_process", "", "" ], [ "B2RXV4-1", "Flvcr1", "GO_0043249", "erythrocyte maturation", "biological_process", "", "" ], [ "B2RXV4-1", "Flvcr1", "GO_0001701", "in utero embryonic development", "biological_process", "", "" ] ] }, "readme": "Name\n - Mouse Gene Ontology (GO)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-09-06T14:06:38.979310\n\nModified on\n - 2022-09-26T09:04:47.900986\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Gene Ontology (GO) dataset contains mouse [taxid:10090] Gene Ontology Id and name, categories and evidence information for UniProtKB canonical accessions. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - go id\n - go name\n - molecular function\n - biological process\n - cellular component\n - Gene Ontology (GO)\n\n Pipeline Steps\n - Step-1: The script extracts the GO Id, name, category and evidence from the triplestore of NT file and maps it to the UniProtKB canonical sequences. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_go_annotation.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_go_annotation.csv\n Name: mouse_protein_go_annotation.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_go_annotation.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20675\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"20782\"\n Name: \"go_term_id\"\n Description: \"The Gene Ontology (GO) term unique alphanumeric identifier\"\n Unique Values: \"19306\"\n Name: \"go_term_label\"\n Description: \"The Gene Ontology (GO) name that is a word or string of words\"\n Unique Values: \"19306\"\n Name: \"go_term_category\"\n Description: \"\"The Gene Ontology (GO) domain to which the term belongs. There are three ontology domain in GO - cellular component\"\n Unique Values: \"3\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"1\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/mouse_protein_go_annotation.csv" }