{
    "bcoid": "GLY_000240",
    "title": "Rat Protein Canonical sequences (UniProtKB)",
    "description": "The Rat Protein Canonical Sequences (UniProtKB) dataset contains rat [taxid:10116] canonical protein ...",
    "filename": "rat_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Canonical Protein fasta Sequences",
        "file_type": "fasta",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|D3ZB44-1|D3ZB44_RAT Isoform 1 of Zinc finger protein 324 OS=Rattus norvegicus OX=10116 GN=Zfp324 PE=4 SV=1 CANONICAL=D3ZB44-1\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIGPSVSRPRVIIQLQRGEEPWVPNRTIAGPGRGTHRRSSLGSNYSARDRHV\nSGASPGATCDRPVRISTSLLPPAGAYPDAKILEGHQSACPSLQKKPTGVSVIYWEQLLLG\nSSSSEATVSLRLTSPVGVPENGSSRVKAFSDLLAPGKQLRVAEQQKPEMQLNPGRTFQSI\nPDLHEAEEGHGISGACHESQGDPSVPEAPIWDELGEALQAGPGLFSGDKPFECRACNKVF\nVKSSDLLKHLRTHTGERPYECAQCGKAFSQTSHLTQHQRIHSGETPYVCMVCSKAFRHSS\nSLVRHQRIHTVEKTFHCNECGKAFSHGSNLSQHRKIHAGGRPYACAQCGRRFCRNSHLIQ\nHERTHTGEKPYACSLCGAAFSQGSSLFKHQRVHTGEKPFSCPQCGRAFSHSSNLTQHQLL\nHTGERPFRCGDCGKAFAKGAVLLSHRRIHTGEKPFVCTQCGRAFRERPALFHHQRIHTGE\nKALRRPRGNMHSQIGSLGVSLDGTHPKATLDPPAVPNIAEA\n\n\n>tr|M0R9X4-1|A0A0G2JZX0_RAT Isoform 1 of Zinc finger, ZZ-type-containing 3 OS=Rattus norvegicus OX=10116 GN=Zzz3 PE=4 SV=3 CANONICAL=M0R9X4-1\nMVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKR\nPEPVPILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDLERQALESCERRQAEPALP\nVLKNIKRCLRAEATNSSEEDSPVKPDKEPVEIRRTVVDHDAEFQGAKRACRCLILDDCEK\nREVKKVNVSEEGPLNAAVLEEITGYLTVNGVDDSDSAVINCDDCQPDRNTKQNSPGSCVL\nQEESVAGDGDSETQTSVFCGSGKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRSQ\nLTAESASGPVSEVQSSLRDSEEEVDVVGDSSASKEQCNENSSDPLDTGSECLPASGEPEL\nSSMLDCVSAQMTSLSEPQEHRYTLRTSPRRAAQTRGSPTKNTSPYRENGQFEENNLSPNE\nTNTTASDNVSESPTNPVEISQDEKVLCCDSENYGSEGLSKPSSEARMNIGHLPSAKESAS\nQHTAEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREA\nLKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTSSLGNFEREFKHRKRHTRRVKLV\nFDKGLPARPKSPLDPKKDGDSLSYSMLPLSDGPEGSHHRPQMIRGRLCDDSKPETFNQLW\nTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPG\nRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDERSCPHSHMSTAVEE\nASDEESIPVIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVR\nWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLD\nPNYFPANR\n\n\n>tr|D3ZB41-1|D3ZB41_RAT Isoform 1 of Zinc finger protein 28 OS=Rattus norvegicus OX=10116 GN=Zfp78 PE=4 SV=3 CANONICAL=D3ZB41-1\nMSVTNVAKPSRILPTSYDIRGFTLERSRTNVLSVGRHLVTAPPALSIRDFTLVRGPTRVR\nDVEGRSEQSHPLIATRAVTPERNRKTVSPVANPLAADKPGAFTREFSFQPDCSRGRFHRS\nQRALGNARDGETSSQMFLNHPSLGLVTFGDVAVVFSQEEWEWLTSEQRSLYWKVMLDNYR\nNLASLGLCASKPDMIALLEQGTDPWMMGRGRCTDLKAVQETKELPPKDLSEETSQAVLRR\nRLLHRRPMCYMSGASWGGDAVFKAQRGSKTNSDMARDSPPELVSAQKNFRKNATWENCDD\nLGLLGQQSVQEAQDSLPRQDSHAGRVTGSTWSTERACSAFRGDRDSECVFERNGQDTAFE\nSQNRAFSEGRDGVCLNSGRWFHLNSSEERSHNCDSGKTSLPNPTVIKETRIYSGKKLFKC\nNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECLECG\nKAFIQNTSLVRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYTCDVCHKSF\nRYGSSLTVHQRIHTGEKPYECEICRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNI\nHLASHLRIHTGEKPFECGDCGKSFSISSQLATHQRIHTGEKPYECKVCNKAFTQKAHLAQ\nHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCLECGKAFGDNSSCTQHQRL\nHTGQRPYECVECGKAFKTKSSLICHRRCHTGEKPYECSACGKAFSHRQSLSVHQRIHSGK\nKPYECKECRKTFIQIGHLNQHKRVHAGERTYNCRKGRRAFRQIARFAHHQRIHSGELPAH\nPTLPSTSNPVDLFSKFVWNPSSLSSS\n\n\n>sp|P09812-1|A0A8I6G867_RAT Isoform 1 of Alpha-1,4 glucan phosphorylase OS=Rattus norvegicus OX=10116 GN=Pygm PE=1 SV=5 CANONICAL=P09812-1\nMSRPLSDQDKRKQISVRGLAGVENVSDLKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV\nRDHLVDRWIRTQQHYYAKDPKRIYYLSLELYMGRTLQNTMVNLALENACDEATYQLGLDM\nEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA\nDDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN\nTMRLWSAKAPPYFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDKFFEGKELRLKQEYFV\nVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELIRILVDLERL\nDWDKAWDVTVKTCAYTNHTVLPEALERWPVHLMETLLPRHLQIIYEINQRFLNRVAAAFP\nGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKF\nQNKTNGITPRRWLVLCNPGLAEVIAERIGEEYISDLDQLRKLLSYLDDQAFIRDVAKVKQ\nENKLKFSAYLETEYKVHINPNSLFDVQVKRIHEYKRQLLNCLHIITLYNRIKREPNRFMV\nPRTIMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPAVGDRFRVIFLENYRVSLAEKVIPA\nADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEDNFFIFGMRVEDVE\nRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMVMHHDRFKVFADYEE\nYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGLEPSRQRLPAPDE\nKI\n\n\n>tr|A0A8I6ASB1-1|D3ZB49_RAT Isoform 1 of Similar to Protein C8orf1 (HT41) (Predicted), isoform CRA_b OS=Rattus norvegicus OX=10116 GN=Osgin2 PE=4 SV=1 CANONICAL=A0A8I6ASB1-1\nMVCGILWVTAMRGPKPNAPETVRGRELRNYSDTETEGEIFNSLVQYLGDNLGPKVKGMPL\nVEETSLLEDSSVTLPMVIIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHSKLEEARHL\nSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDSPSILHWKLEQHHSIPHLVLG\nKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWISSKRRNLKGDRVMPEEIARYYKHYV\nKVMGLQKNFRENTYITSVSRLYRDQGDNGSQDRDISAKHLQNQKSKFIKRNWEIRGYQRV\nAGGSHVPFCLFAENVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGAAINSGKLCGRVDP\nVLIVGSGLTAADAVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQ\nSYSADSDHLSDYTSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAVILIGSHPNLSFLK\nEQGCYLGRNSSQPISCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTR\nCLVTRQKKKQHLFVQRGGGDGVA\n\n\n>tr|A0A8I6AX65-1|D3ZB48_RAT Isoform 1 of Hook microtubule-tethering protein 1 OS=Rattus norvegicus OX=10116 GN=Hook1 PE=1 SV=1 CANONICAL=A0A8I6AX65-1\nMDVREQLAGIGSPHLPMCVLEIEHRLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFS\nESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITESSDPVE\nLGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVSSPASDAVGEL\nEQQLKRALEELQEALAEKEELKQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSF\nDDPNTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLA\nEETRALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVS\nLEEELKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERL\nIEQRDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIRLQHENKM\nLRLQQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGS\nKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELEAALQKKD\nEDMKAMEERYKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKDRRIEILESECKVAK\nFRDYEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQQRHITSTRR\nNLSVKVPAAASD\n\n\n>tr|A0A8I6A5H0-1|A0A8I6A4J1_RAT Isoform 1 of Lymphocyte antigen 9 OS=Rattus norvegicus OX=10116 GN=Ly9 PE=4 SV=1 CANONICAL=A0A8I6A5H0-1\nMADLKRYWCERALDAFSEKTRKSQQQIFSPILWIPLLFLLMGLGASGKETPPRVISGILG\nGSVTFPLNISINAEIELITWTYLSKTLVLAITSRSGITILLKEYSGRLNISQDGYSLCMS\nNLTKSDSGSYQAQIIQKNVDHTVRNEFILHIYEQLQEPQVTVKSMTSSENDSCTVTLICT\nVNGSKDGVQYSWIQKDTHNKTSHESHILRVSPSACDPDLPYTCTARNPVSQNSSQPVRVR\nQFCTGTSRKKTTGKTVIGILGEPVTLSLEFPASEETKNVVWVFNTSVISQEPKGAATVDP\nHRHKSKSSEERRLRISDQDSSLKISQLKMEDTGPYHAYVCSETSRGPSVRHFTLLVYQRL\nKKPNVTQSPVHMTNGICEVVLTCSVEGGEKDVRYTWMPLQKETVMSQGKSHLNVSWKIGE\nRLPNFTCTTHNPVSNSSRQLSSGSLCSGPERNKRLWILLLLGLFLGMLIGGCFILKKRKL\nCEGSSLAIRNSQAKVPAEIPETPAGHIGFSVLSQQYEKLDMPAKTIRHHSTSTSDTSSES\nSATTEEDDEKTRMHSTVNGRSQVYDLFTQEDIAHDLASEGQAEYEAVSPDDKVAKSMDEE\nDTAYTQESLIVQGKNPLPQKKEGSNTIYCSIQKHKTGENPLPQKKEGSNTIYCSLQKHKT\nMVQTPQQDTESPETPTYENFT\n\n\n>sp|F1LX07-1|A0A8W1B2M1_RAT Isoform 1 of Electrogenic aspartate/glutamate antiporter SLC25A12, mitochondrial OS=Rattus norvegicus OX=10116 GN=Slc25a12 PE=4 SV=5 CANONICAL=F1LX07-1\nMAVKVHTTKRGDPHELRNIFLQYASTEVDGEHYMTPEDFVQRYLGLYNDPNSNPKIVQLL\nAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTII\nHHHIPFNWDCEFIRLHFGHNRKKHLNYVEFTQFLQELQLEHARQAFALKDKSKSGMISGL\nDFSDVMVTIRSHMLTPFVEENLVSAAGGSTSHQVSFSYFNAFNSLLNNMELVRKIYSTLA\nGTRKDIEVTKEEFASAITYGVVTPINVGILYFINNVHISTGRLTLADIERIAPLAEGALP\nYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPIDLVKTRMQNQRGTG\nSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRD\nGSIPLPAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLQDLGLFGLY\nKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGINLLTAGAMAGVPAASLVTPADV\nIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELL\nQRWFYIDFGGLKPSGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFK\nSPGVAAAQPKVAAAAQ\n\n\n>sp|Q5RJZ1-1|A0A0G2JVG0_RAT Isoform 1 of Regulator of telomere elongation helicase 1 OS=Rattus norvegicus OX=10116 GN=Rtel1 PE=3 SV=2 CANONICAL=Q5RJZ1-1\nMPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR\nEHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLT\nQVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEE\nKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNI\nDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFI\nIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQ\nTKGCILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHF\nYKVHIHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSG\nTLAPLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSS\nLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSE\nVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKM\nQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADA\nRAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSVSEGEAAVKEATL\nSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRPMGLLAALE\nYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFM\nVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH\nKQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTASKQGRRELESKLTLSEGADRQLDPGE\nHLNQGWPHLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAAL\nRAYKQDDDLDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGK\nGLELPCPRDESTTVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQ\nLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVN\nRKQSIAQVIWPKPQ\n\n\n</pre>"
    },
    "readme": "Name\n   - Rat Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2019-09-06T14:06:38.967574\n\nModified on\n   - 2022-09-26T09:04:47.996653\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Canonical Sequences (UniProtKB) dataset contains rat [taxid:10116] canonical protein fasta sequences from the UniProtKB database. The dataset is derived from 2019_09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all rat canonical accessions data from the triplestore containing triples from nt file and extracts  dataset in a fasta format. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_canonicalsequences.fasta\n      Name: rat_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"22816\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_protein_canonicalsequences.fasta"
}