{ "bcoid": "GLY_000232", "title": "Rat UniProtKB Xref CAZy", "description": "The Rat UniprotKB Xref CAZy contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Cazy cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5BK36-1...", "protein_xref..." ], [ "Q4FZV0-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q5BK36-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "Q4FZV0-1", "protein_xref_cazy", "GH2", "Glycoside Hydrolase Family 2" ], [ "Q6AYL7-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q6AXR4-1", "protein_xref_cazy", "GH20", "Glycoside Hydrolase Family 20" ], [ "Q6UE39-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q6UE39-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q5FVQ4-1", "protein_xref_cazy", "CBM57", "Carbohydrate-Binding Module Family 57" ], [ "Q6ZXC7-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q6ZXC8-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q11205-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q6AYS4-1", "protein_xref_cazy", "GH29", "Glycoside Hydrolase Family 29" ], [ "Q924T4-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q09325-1", "protein_xref_cazy", "GT13", "Glycosyltransferase Family 13" ], [ "B5DEY9-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "Q5KR61-1", "protein_xref_cazy", "GT76", "Glycosyltransferase Family 76" ], [ "M0R3S4-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q5M820-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "P17625-1", "protein_xref_cazy", "GT3", "Glycosyltransferase Family 3" ], [ "Q62789-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "D4A4R1-1", "protein_xref_cazy", "GT43", "Glycosyltransferase Family 43" ], [ "P08542-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "P08541-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q6GX83-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q66H12-1", "protein_xref_cazy", "GH27", "Glycoside Hydrolase Family 27" ], [ "Q91ZN7-1", "protein_xref_cazy", "GT66", "Glycosyltransferase Family 66" ], [ "Q02401-1", "protein_xref_cazy", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q3T1L5-1", "protein_xref_cazy", "GT57", "Glycosyltransferase Family 57" ], [ "Q6P7A9-1", "protein_xref_cazy", "GH31", "Glycoside Hydrolase Family 31" ], [ "Q6P7A1-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q6P7A1-1", "protein_xref_cazy", "GT49", "Glycosyltransferase Family 49" ], [ "P13721-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q10984-1", "protein_xref_cazy", "GT11", "Glycosyltransferase Family 11" ], [ "Q10980-1", "protein_xref_cazy", "GT11", "Glycosyltransferase Family 11" ], [ "Q9JMA8-1", "protein_xref_cazy", "GT47", "Glycosyltransferase Family 47" ], [ "Q9JMA8-1", "protein_xref_cazy", "GT64", "Glycosyltransferase Family 64" ], [ "B2GV39-1", "protein_xref_cazy", "GT54", "Glycosyltransferase Family 54" ], [ "P28494-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q8CFC4-1", "protein_xref_cazy", "GT6", "Glycosyltransferase Family 6" ], [ "Q4QQS6-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q01460-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q66H49-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "Q09426-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q6GV29-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q6IN01-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "P61943-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9JJ05-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "O08730-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q62994-1", "protein_xref_cazy", "GT10", "Glycosyltransferase Family 10" ], [ "Q64686-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "P53534-1", "protein_xref_cazy", "GT35", "Glycosyltransferase Family 35" ], [ "Q14U74-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "P06760-1", "protein_xref_cazy", "GH2", "Glycoside Hydrolase Family 2" ], [ "P08430-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q6T5D9-1", "protein_xref_cazy", "GT14", "Glycosyltransferase Family 14" ], [ "P80386-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "Q80VJ4-1", "protein_xref_cazy", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "Q9Z2Y9-1", "protein_xref_cazy", "GH1", "Glycoside Hydrolase Family 1" ], [ "O88941-1", "protein_xref_cazy", "GH63", "Glycoside Hydrolase Family 63" ], [ "Q925R7-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q925R7-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q641X3-1", "protein_xref_cazy", "GH20", "Glycoside Hydrolase Family 20" ], [ "Q9R1U9-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q99PR0-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "B1WBY3-1", "protein_xref_cazy", "GT22", "Glycosyltransferase Family 22" ], [ "Q71RP1-1", "protein_xref_cazy", "GH79", "Glycoside Hydrolase Family 79" ], [ "Q8VIJ5-1", "protein_xref_cazy", "GH84", "Glycoside Hydrolase Family 84" ], [ "Q66HH1-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "Q3L7M0-1", "protein_xref_cazy", "GT6", "Glycosyltransferase Family 6" ], [ "A0A8I5ZU41-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q64627-1", "protein_xref_cazy", "GH33", "Glycoside Hydrolase Family 33" ], [ "Q09326-1", "protein_xref_cazy", "GT16", "Glycosyltransferase Family 16" ], [ "Q9ET32-1", "protein_xref_cazy", "GT6", "Glycosyltransferase Family 6" ], [ "P56558-1", "protein_xref_cazy", "GT41", "Glycosyltransferase Family 41" ], [ "Q5M854-1", "protein_xref_cazy", "GT54", "Glycosyltransferase Family 54" ], [ "Q5XIN7-1", "protein_xref_cazy", "GT13", "Glycosyltransferase Family 13" ], [ "Q99JB3-1", "protein_xref_cazy", "GT10", "Glycosyltransferase Family 10" ], [ "Q701R3-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "P28494-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q10473-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q10473-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q02734-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "A0A0G2K4C0-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "Q6P6V1-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q6P6V1-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ] ] }, "readme": "Name\n - Rat UniProtKB Xref CAZy\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-09-06T14:06:38.960116\n\nModified on\n - 2022-09-26T09:04:47.886795\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref CAZy contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - CAZy is a database of Carbohydrate-Active enZymes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates. \n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_xref_cazy.csv\n Name: rat_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"174\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"68\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"68\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_protein_xref_cazy.csv" }