{ "bcoid": "GLY_000229", "title": "Rat UniProtKB Xref OMA", "description": "The Rat UniProtKB Xref OMA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A0G2K1R8-1...", "protein_xref..." ], [ "Q9WVK3-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A0G2K1R8-1", "protein_xref_oma", "HNNSHWT", "" ], [ "Q9WVK3-1", "protein_xref_oma", "RIWDSKV", "" ], [ "A0A0G2JVG5-1", "protein_xref_oma", "QWKEQQW", "" ], [ "A0A0G2JVG6-1", "protein_xref_oma", "NYTEHQS", "" ], [ "P32301-1", "protein_xref_oma", "CFVNNEK", "" ], [ "A0A8I6B3C5-1", "protein_xref_oma", "PEVQHNQ", "" ], [ "A0A8I5Y4X4-1", "protein_xref_oma", "AMDQFQV", "" ], [ "P30937-1", "protein_xref_oma", "WPHPAWS", "" ], [ "P30936-1", "protein_xref_oma", "VCSQEPT", "" ], [ "F7FI04-1", "protein_xref_oma", "NIRIWDE", "" ], [ "P02767-1", "protein_xref_oma", "TWEPFAT", "" ], [ "D4A4W8-1", "protein_xref_oma", "RNDHKDM", "" ], [ "D4A4W9-1", "protein_xref_oma", "KTHAFAK", "" ], [ "D4A4W1-1", "protein_xref_oma", "PGNATGM", "" ], [ "D4A4W2-1", "protein_xref_oma", "EFWILLK", "" ], [ "F7EN52-1", "protein_xref_oma", "IAGRTMF", "" ], [ "D4A4W4-1", "protein_xref_oma", "DQLRRSW", "" ], [ "D4A4W5-1", "protein_xref_oma", "PRFFIFA", "" ], [ "D4A4W6-1", "protein_xref_oma", "RNRRPFA", "" ], [ "D4A4W7-1", "protein_xref_oma", "YTYRTVT", "" ], [ "P01237-1", "protein_xref_oma", "NEVYSRW", "" ], [ "P01230-1", "protein_xref_oma", "GPCRLSN", "" ], [ "Q9JHY1-1", "protein_xref_oma", "YSRGYFE", "" ], [ "Q9JHY2-1", "protein_xref_oma", "RMSMFLP", "" ], [ "Q9WU49-1", "protein_xref_oma", "THERWED", "" ], [ "F1MAA4-1", "protein_xref_oma", "SGWKDPL", "" ], [ "F7FHL6-1", "protein_xref_oma", "NFIKHCA", "" ], [ "Q5XI22-1", "protein_xref_oma", "VNQFHGA", "" ], [ "P83748-1", "protein_xref_oma", "TSEGHIC", "" ], [ "P18508-1", "protein_xref_oma", "PMDVHSC", "" ], [ "P04757-1", "protein_xref_oma", "AEHRLYA", "" ], [ "Q9R1N3-1", "protein_xref_oma", "TEENFAC", "" ], [ "D3ZIY3-1", "protein_xref_oma", "GAYRSMG", "" ], [ "D3ZIY7-1", "protein_xref_oma", "NTIGKPH", "" ], [ "A0A8I6GKG1-1", "protein_xref_oma", "TIWLYEQ", "" ], [ "A0A8I6AHP1-1", "protein_xref_oma", "GISHESN", "" ], [ "A0A8I6A6H3-1", "protein_xref_oma", "WDFQNAF", "" ], [ "D3ZSP7-1", "protein_xref_oma", "HDDQGLV", "" ], [ "D3ZFP5-1", "protein_xref_oma", "VECTACY", "" ], [ "D3ZFP4-1", "protein_xref_oma", "NVYPQED", "" ], [ "D3ZFP7-1", "protein_xref_oma", "SAITERC", "" ], [ "D3ZFP6-1", "protein_xref_oma", "DWKEPQM", "" ], [ "D3ZFP1-1", "protein_xref_oma", "NGPMADT", "" ], [ "D4A131-1", "protein_xref_oma", "PQVHILE", "" ], [ "D4A133-1", "protein_xref_oma", "RIVKTFW", "" ], [ "A0A1W2Q6J4-1", "protein_xref_oma", "LFTESHF", "" ], [ "D4A138-1", "protein_xref_oma", "GYMSVYS", "" ], [ "F1LWI7-1", "protein_xref_oma", "RETKMEP", "" ], [ "F1LWI8-1", "protein_xref_oma", "ISCCVVS", "" ], [ "D3ZCS5-1", "protein_xref_oma", "FCVESDW", "" ], [ "D3ZCS4-1", "protein_xref_oma", "QHNMKDG", "" ], [ "D3ZCS6-1", "protein_xref_oma", "IHRTHYS", "" ], [ "D3ZCS1-1", "protein_xref_oma", "LEFWVVC", "" ], [ "D3ZCS3-1", "protein_xref_oma", "GKAGHRI", "" ], [ "A0A3B0J1M6-1", "protein_xref_oma", "AMIPWVL", "" ], [ "D3ZCS9-1", "protein_xref_oma", "ENQNYHI", "" ], [ "D3ZUF0-1", "protein_xref_oma", "LQWQVNM", "" ], [ "D3ZUF1-1", "protein_xref_oma", "DCNRWAE", "" ], [ "Q6P5P4-1", "protein_xref_oma", "WQWKSIV", "" ], [ "Q6P5P3-1", "protein_xref_oma", "YHQKEKQ", "" ], [ "D3ZXJ0-1", "protein_xref_oma", "WLVCGDP", "" ], [ "D3ZB41-1", "protein_xref_oma", "YNHKSDK", "" ], [ "D3ZXJ5-1", "protein_xref_oma", "ERFARCE", "" ], [ "P14669-1", "protein_xref_oma", "CKLWVGH", "" ], [ "F1LP13-1", "protein_xref_oma", "NIHACYT", "" ], [ "Q01956-1", "protein_xref_oma", "WMIERTS", "" ], [ "A0A0G2JVZ2-1", "protein_xref_oma", "QGHGEST", "" ], [ "A0A0G2JVZ0-1", "protein_xref_oma", "FQLALHI", "" ], [ "A0A0G2JVZ7-1", "protein_xref_oma", "WVAYEKV", "" ], [ "F1LZX9-1", "protein_xref_oma", "VGQVTIC", "" ], [ "Q9QYH7-1", "protein_xref_oma", "QYQQYGR", "" ], [ "Q67ER9-1", "protein_xref_oma", "WVQKKAI", "" ], [ "D3ZT68-1", "protein_xref_oma", "YGTSGGM", "" ], [ "Q9EPW1-1", "protein_xref_oma", "YHHEDIP", "" ], [ "D3ZT66-1", "protein_xref_oma", "NMAFNFF", "" ], [ "D4AE80-1", "protein_xref_oma", "TPQHDQM", "" ], [ "D4AE81-1", "protein_xref_oma", "WHSTYSN", "" ], [ "D4AE82-1", "protein_xref_oma", "HVCPSAL", "" ], [ "D4AE85-1", "protein_xref_oma", "MDEETWE", "" ], [ "A0A0G2K8J8-1", "protein_xref_oma", "TCPHVCT", "" ], [ "P43219-1", "protein_xref_oma", "LNCPPWR", "" ], [ "D3ZPI2-1", "protein_xref_oma", "YNYPADA", "" ], [ "Q1M168-1", "protein_xref_oma", "AKNMPGN", "" ], [ "Q60I18-1", "protein_xref_oma", "WVATRIS", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref OMA\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-09-06T14:06:38.957228\n\nModified on\n - 2022-09-26T09:04:47.902537\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref OMA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes. \n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_xref_oma.csv\n Name: rat_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18064\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"18447\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_protein_xref_oma.csv" }