{
    "bcoid": "GLY_000118",
    "title": "Mouse UniProtKB Xref PANTHER",
    "description": "The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...",
    "filename": "mouse_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Protein",
        "tags": "Panther cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q8BH24-1...",
                "protein_xref..."
            ],
            [
                "Q8BH26-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q8BH24-1",
                "protein_xref_panther",
                "PTHR10766",
                "TRANSMEMBRANE 9 SUPERFAMILY PROTEIN"
            ],
            [
                "Q8BH26-1",
                "protein_xref_panther",
                "PTHR31925",
                "TRANSMEMBRANE PROTEIN 251"
            ],
            [
                "E9Q3P4-1",
                "protein_xref_panther",
                "PTHR18874",
                "CMF/LEK/CENP CELL DIVISION-RELATED"
            ],
            [
                "P03899-1",
                "protein_xref_panther",
                "PTHR11058",
                "NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3"
            ],
            [
                "Q9CWR0-1",
                "protein_xref_panther",
                "PTHR22826:SF117",
                "RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 25"
            ],
            [
                "O35153-1",
                "protein_xref_panther",
                "PTHR12791",
                "GOLGI SNARE BET1-RELATED"
            ],
            [
                "Q91YE9-1",
                "protein_xref_panther",
                "PTHR31367",
                "CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER"
            ],
            [
                "Q02853-1",
                "protein_xref_panther",
                "PTHR10201:SF20",
                "STROMELYSIN-3"
            ],
            [
                "P52479-1",
                "protein_xref_panther",
                "PTHR13328:SF5",
                "LD28815P"
            ],
            [
                "P02762-1",
                "protein_xref_panther",
                "PTHR11430",
                "LIPOCALIN"
            ],
            [
                "Q9QYH6-1",
                "protein_xref_panther",
                "PTHR11736",
                "MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN"
            ],
            [
                "Q9QYH6-1",
                "protein_xref_panther",
                "PTHR11736:SF28",
                "MELANOMA-ASSOCIATED ANTIGEN D1"
            ],
            [
                "Q5EBH1-1",
                "protein_xref_panther",
                "PTHR22738",
                "RASSF"
            ],
            [
                "Q5EBH1-1",
                "protein_xref_panther",
                "PTHR22738:SF9",
                "RAS ASSOCIATION DOMAIN-CONTAINING PROTEIN 5"
            ],
            [
                "Q8BTY1-1",
                "protein_xref_panther",
                "PTHR43807:SF14",
                "KYNURENINE--OXOGLUTARATE TRANSAMINASE 1"
            ],
            [
                "Q5SRT8-1",
                "protein_xref_panther",
                "PTHR10177",
                "CYCLINS"
            ],
            [
                "P10852-1",
                "protein_xref_panther",
                "PTHR46673",
                "4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN"
            ],
            [
                "Q9EP79-1",
                "protein_xref_panther",
                "PTHR24062",
                "VOMERONASAL TYPE-1 RECEPTOR"
            ],
            [
                "Q3URK3-1",
                "protein_xref_panther",
                "PTHR23358",
                "UNCHARACTERIZED"
            ],
            [
                "Q9EP72-1",
                "protein_xref_panther",
                "PTHR13605",
                "UNCHARACTERIZED"
            ],
            [
                "Q9EP71-1",
                "protein_xref_panther",
                "PTHR24129",
                "ANKYCORBIN"
            ],
            [
                "D3YWQ0-1",
                "protein_xref_panther",
                "PTHR11255",
                "DIACYLGLYCEROL KINASE"
            ],
            [
                "P30282-1",
                "protein_xref_panther",
                "PTHR10177:SF65",
                "G1/S-SPECIFIC CYCLIN-D3"
            ],
            [
                "P30282-1",
                "protein_xref_panther",
                "PTHR10177",
                "CYCLINS"
            ],
            [
                "P97411-1",
                "protein_xref_panther",
                "PTHR10164:SF3",
                "ISLET CELL AUTOANTIGEN 1"
            ],
            [
                "P97411-1",
                "protein_xref_panther",
                "PTHR10164",
                "ISLET CELL AUTOANTIGEN 1"
            ],
            [
                "Q3UHI0-1",
                "protein_xref_panther",
                "PTHR22461",
                "UNCHARACTERIZED"
            ],
            [
                "Q3UHI0-1",
                "protein_xref_panther",
                "PTHR22461:SF2",
                "SERINE-RICH COILED-COIL DOMAIN-CONTAINING PROTEIN 2"
            ],
            [
                "P53702-1",
                "protein_xref_panther",
                "PTHR12743",
                "CYTOCHROME C1 HEME LYASE"
            ],
            [
                "Q9Z2V6-1",
                "protein_xref_panther",
                "PTHR45364:SF2",
                "HISTONE DEACETYLASE"
            ],
            [
                "Q9Z2V6-1",
                "protein_xref_panther",
                "PTHR45364",
                "HISTONE DEACETYLASE 9-RELATED"
            ],
            [
                "O08915-1",
                "protein_xref_panther",
                "PTHR11242:SF3",
                "AH RECEPTOR-INTERACTING PROTEIN"
            ],
            [
                "O08915-1",
                "protein_xref_panther",
                "PTHR11242",
                "ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED"
            ],
            [
                "O08914-1",
                "protein_xref_panther",
                "PTHR45847:SF3",
                "FATTY-ACID AMIDE HYDROLASE 1"
            ],
            [
                "O08917-1",
                "protein_xref_panther",
                "PTHR13806",
                "FLOTILLIN-RELATED"
            ],
            [
                "O08918-1",
                "protein_xref_panther",
                "PTHR10177:SF60",
                "CYCLIN-G2"
            ],
            [
                "O08918-1",
                "protein_xref_panther",
                "PTHR10177",
                "CYCLINS"
            ],
            [
                "Q80WC1-1",
                "protein_xref_panther",
                "PTHR21669:SF10",
                "UBINUCLEIN-2"
            ],
            [
                "Q9CQA0-1",
                "protein_xref_panther",
                "PTHR34436",
                "CENTROMERE PROTEIN M"
            ],
            [
                "Q91VH6-1",
                "protein_xref_panther",
                "PTHR11060",
                "PROTEIN MEMO1"
            ],
            [
                "Q9WTP3-1",
                "protein_xref_panther",
                "PTHR11849",
                "ETS"
            ],
            [
                "Q8C0L9-1",
                "protein_xref_panther",
                "PTHR22958:SF1",
                "GLYCEROPHOSPHOCHOLINE PHOSPHODIESTERASE GPCPD1"
            ],
            [
                "Q66GT5-1",
                "protein_xref_panther",
                "PTHR46712",
                "PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1"
            ],
            [
                "Q8BTJ4-1",
                "protein_xref_panther",
                "PTHR10151:SF79",
                "BIS(5'-ADENOSYL)-TRIPHOSPHATASE ENPP4"
            ],
            [
                "Q3TX08-1",
                "protein_xref_panther",
                "PTHR10631",
                "N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE"
            ],
            [
                "P04760-1",
                "protein_xref_panther",
                "PTHR18945",
                "NEUROTRANSMITTER GATED ION CHANNEL"
            ],
            [
                "Q91UZ1-1",
                "protein_xref_panther",
                "PTHR10336",
                "PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN"
            ],
            [
                "Q61418-1",
                "protein_xref_panther",
                "PTHR45711:SF2",
                "H(+)/CL(-) EXCHANGE TRANSPORTER 4"
            ],
            [
                "Q91UZ1-1",
                "protein_xref_panther",
                "PTHR10336",
                "PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN"
            ],
            [
                "Q9D387-1",
                "protein_xref_panther",
                "PTHR11506",
                "LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN"
            ],
            [
                "Q3V3Q4-1",
                "protein_xref_panther",
                "PTHR12200",
                "INTERFERON-INDUCIBLE PROTEIN AIM2 FAMILY MEMBER"
            ],
            [
                "Q3V3Q7-1",
                "protein_xref_panther",
                "PTHR13280",
                "PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN"
            ],
            [
                "Q9D516-1",
                "protein_xref_panther",
                "PTHR12111",
                "SPLICING FACTOR YJU2"
            ],
            [
                "Q9D8K8-1",
                "protein_xref_panther",
                "PTHR45760",
                "FI19922P1-RELATED"
            ],
            [
                "Q9D518-1",
                "protein_xref_panther",
                "PTHR33560",
                "PROTEIN FAM227B"
            ],
            [
                "Q9D519-1",
                "protein_xref_panther",
                "PTHR12002",
                "CLAUDIN"
            ],
            [
                "Q8K2M0-1",
                "protein_xref_panther",
                "PTHR11362",
                "PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN"
            ],
            [
                "Q8K2M3-1",
                "protein_xref_panther",
                "PTHR28626",
                "SRR1-LIKE PROTEIN"
            ],
            [
                "P70331-1",
                "protein_xref_panther",
                "PTHR15304",
                "MYOD FAMILY INHIBITOR"
            ],
            [
                "D3Z6Q9-1",
                "protein_xref_panther",
                "PTHR46514:SF1",
                "BRIDGING INTEGRATOR 2"
            ],
            [
                "Q9R210-1",
                "protein_xref_panther",
                "PTHR45776:SF5",
                "TRANSCRIPTION FACTOR EB"
            ],
            [
                "Q6P8I4-1",
                "protein_xref_panther",
                "PTHR16523",
                "PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN"
            ],
            [
                "Q8BLQ7-1",
                "protein_xref_panther",
                "PTHR43243:SF20",
                "CATIONIC AMINO ACID TRANSPORTER 3"
            ],
            [
                "Q14BV6-1",
                "protein_xref_panther",
                "PTHR31609",
                "YDJC DEACETYLASE FAMILY MEMBER"
            ],
            [
                "Q8BWU3-1",
                "protein_xref_panther",
                "PTHR15736",
                "PROTEIN FAM131B-RELATED"
            ],
            [
                "Q7TQ33-1",
                "protein_xref_panther",
                "PTHR31428:SF5",
                "RGM DOMAIN FAMILY MEMBER B"
            ],
            [
                "Q7TQ33-1",
                "protein_xref_panther",
                "PTHR31428",
                "RGM DOMAIN FAMILY MEMBER DRAG-1"
            ],
            [
                "Q9Z1T1-1",
                "protein_xref_panther",
                "PTHR11134",
                "ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER"
            ],
            [
                "P70323-1",
                "protein_xref_panther",
                "PTHR11267",
                "T-BOX PROTEIN-RELATED"
            ],
            [
                "Q8CHC4-1",
                "protein_xref_panther",
                "PTHR11200:SF158",
                "SYNAPTOJANIN-1"
            ],
            [
                "Q8K2J4-1",
                "protein_xref_panther",
                "PTHR22367",
                "COILED-COIL DOMAIN-CONTAINING PROTEIN 14"
            ],
            [
                "A2RSY6-1",
                "protein_xref_panther",
                "PTHR10631",
                "N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE"
            ],
            [
                "Q8CB67-1",
                "protein_xref_panther",
                "PTHR46876",
                "LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11"
            ],
            [
                "Q80VU4-1",
                "protein_xref_panther",
                "PTHR11589:SF8",
                "NEUROTROPHIN-4"
            ],
            [
                "Q80VU4-1",
                "protein_xref_panther",
                "PTHR11589",
                "NERVE GROWTH FACTOR NGF -RELATED"
            ],
            [
                "L0N7N1-1",
                "protein_xref_panther",
                "PTHR24115",
                "KINESIN-RELATED"
            ],
            [
                "Q8VC04-1",
                "protein_xref_panther",
                "PTHR28556",
                "TRANSMEMBRANE PROTEIN 106B"
            ],
            [
                "P22727-1",
                "protein_xref_panther",
                "PTHR12027",
                "WNT RELATED"
            ],
            [
                "Q9R061-1",
                "protein_xref_panther",
                "PTHR23264",
                "NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED"
            ],
            [
                "P59672-1",
                "protein_xref_panther",
                "PTHR24174:SF4",
                "ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 1A"
            ],
            [
                "Q8BGW1-1",
                "protein_xref_panther",
                "PTHR31291",
                "ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO"
            ],
            [
                "Q8BGW3-1",
                "protein_xref_panther",
                "PTHR19290:SF53",
                "CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 23"
            ],
            [
                "Q8BGW8-1",
                "protein_xref_panther",
                "PTHR15950",
                "TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN"
            ],
            [
                "Q497P3-1",
                "protein_xref_panther",
                "PTHR17149",
                "NUCLEAR PROTEIN 1 AND 2"
            ]
        ]
    },
    "readme": "Name\n   - Mouse UniProtKB Xref PANTHER\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2019-03-15T15:06:27.574866\n\nModified on\n   - 2022-09-26T08:56:48.526479\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n   - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_xref_panther.csv\n      Name: mouse_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"10722\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"7193\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"6872\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/mouse_protein_xref_panther.csv"
}