{ "bcoid": "GLY_000117", "title": "Human UniProtKB Xref PANTHER", "description": "The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_panther", "PTHR11817", "PYRUVATE KINASE" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618:SF4", "TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618", "TRANSCRIPTION INITIATION FACTOR IIB-RELATED" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320", "MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320:SF8", "MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MEMBER 7" ], [ "O14817-1", "protein_xref_panther", "PTHR19282", "TETRASPANIN" ], [ "A2RU30-1", "protein_xref_panther", "PTHR17469:SF1", "PROTEIN TESPA1" ], [ "A2RU30-1", "protein_xref_panther", "PTHR17469", "SPERM SPECIFIC ANTIGEN 2-RELATED" ], [ "Q6UWY5-1", "protein_xref_panther", "PTHR23192:SF13", "OLFACTOMEDIN-LIKE PROTEIN 1" ], [ "Q96J66-1", "protein_xref_panther", "PTHR24223:SF168", "ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 11" ], [ "Q96J65-1", "protein_xref_panther", "PTHR24223:SF10", "MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9" ], [ "Q6UW68-1", "protein_xref_panther", "PTHR46916", "TRANSMEMBRANE PROTEIN 205" ], [ "Q53F39-1", "protein_xref_panther", "PTHR13315", "METALLO PHOSPHOESTERASE RELATED" ], [ "Q13829-1", "protein_xref_panther", "PTHR11145", "BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER" ], [ "P40429-1", "protein_xref_panther", "PTHR11545", "RIBOSOMAL PROTEIN L13" ], [ "P62873-1", "protein_xref_panther", "PTHR19850", "GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA" ], [ "Q9H2I8-1", "protein_xref_panther", "PTHR46282", "LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN" ], [ "Q969N2-1", "protein_xref_panther", "PTHR12959", "GPI TRANSAMIDASE COMPONENT PIG-T-RELATED" ], [ "P09471-1", "protein_xref_panther", "PTHR10218", "GTP-BINDING PROTEIN ALPHA SUBUNIT" ], [ "Q9NXE4-1", "protein_xref_panther", "PTHR12988", "SPHINGOMYELIN PHOSPHODIESTERASE 4" ], [ "P06681-1", "protein_xref_panther", "PTHR46393:SF2", "COMPLEMENT C2" ], [ "Q9BQQ3-1", "protein_xref_panther", "PTHR12893", "GOLGI REASSEMBLY STACKING PROTEIN GRASP" ], [ "Q92552-1", "protein_xref_panther", "PTHR21393", "MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27" ], [ "Q9NQU5-1", "protein_xref_panther", "PTHR45832:SF3", "NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE" ], [ "H0YL14-1", "protein_xref_panther", "PTHR18884:SF108", "TRANSMEMBRANE PROTEIN 250" ], [ "Q96L93-1", "protein_xref_panther", "PTHR24115", "KINESIN-RELATED" ], [ "Q969W1-1", "protein_xref_panther", "PTHR12246", "PALMITOYLTRANSFERASE ZDHHC16" ], [ "Q13228-1", "protein_xref_panther", "PTHR23300", "METHANETHIOL OXIDASE" ], [ "P29353-1", "protein_xref_panther", "PTHR10337:SF2", "SHC-TRANSFORMING PROTEIN 1" ], [ "Q8N865-1", "protein_xref_panther", "PTHR31393", "C5ORF31" ], [ "Q9Y547-1", "protein_xref_panther", "PTHR33906", "INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG" ], [ "Q92562-1", "protein_xref_panther", "PTHR45738", "POLYPHOSPHOINOSITIDE PHOSPHATASE" ], [ "Q86VY4-1", "protein_xref_panther", "PTHR11875", "TESTIS-SPECIFIC Y-ENCODED PROTEIN" ], [ "Q86VY9-1", "protein_xref_panther", "PTHR31815", "AGAP005329-PA" ], [ "Q9Y5S9-1", "protein_xref_panther", "PTHR45894", "RNA-BINDING PROTEIN 8A" ], [ "P41250-1", "protein_xref_panther", "PTHR10745", "GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2" ], [ "O15078-1", "protein_xref_panther", "PTHR18879", "CENTROSOMAL PROTEIN OF 290 KDA" ], [ "Q8TF17-1", "protein_xref_panther", "PTHR22647", "SH3 DOMAIN AND TETRATRICOPEPTIDE REPEATS CONTAINING PROTEIN" ], [ "P19075-1", "protein_xref_panther", "PTHR19282", "TETRASPANIN" ], [ "Q3C1V0-1", "protein_xref_panther", "PTHR23320", "MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED" ], [ "Q96QE4-1", "protein_xref_panther", "PTHR23045", "LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37A" ], [ "Q99519-1", "protein_xref_panther", "PTHR10628", "SIALIDASE" ], [ "Q96RU7-1", "protein_xref_panther", "PTHR22961", "SER/THR PROTEIN KINASE-TRB" ], [ "Q96RU7-1", "protein_xref_panther", "PTHR22961:SF14", "TRIBBLES HOMOLOG 3" ], [ "O75448-1", "protein_xref_panther", "PTHR12898", "MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24" ], [ "Q96RU3-1", "protein_xref_panther", "PTHR15735:SF13", "FORMIN-BINDING PROTEIN 1" ], [ "O14964-1", "protein_xref_panther", "PTHR46275", "HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE" ], [ "Q96RU8-1", "protein_xref_panther", "PTHR22961:SF17", "TRIBBLES HOMOLOG 1" ], [ "Q96RU8-1", "protein_xref_panther", "PTHR22961", "SER/THR PROTEIN KINASE-TRB" ], [ "Q96IK0-1", "protein_xref_panther", "PTHR31034", "TRANSMEMBRANE PROTEIN 101" ], [ "Q7Z7G2-1", "protein_xref_panther", "PTHR16705", "COMPLEXIN" ], [ "Q9UDX5-1", "protein_xref_panther", "PTHR11001", "MITOCHONDRIAL FISSION PROCESS PROTEIN 1" ], [ "Q5VWN6-1", "protein_xref_panther", "PTHR16207", "UNCHARACTERIZED" ], [ "P01024-1", "protein_xref_panther", "PTHR11412:SF81", "COMPLEMENT C3" ], [ "Q5VYV7-1", "protein_xref_panther", "PTHR28557", "PROTEIN SLX4IP" ], [ "Q8N6T0-1", "protein_xref_panther", "PTHR14652", "TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE" ], [ "Q9UIF3-1", "protein_xref_panther", "PTHR19960", "TEKTIN" ], [ "P0C5J1-1", "protein_xref_panther", "PTHR14614", "HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN" ], [ "P16520-1", "protein_xref_panther", "PTHR19850", "GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA" ], [ "Q9Y296-1", "protein_xref_panther", "PTHR23249", "TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT" ], [ "Q9Y294-1", "protein_xref_panther", "PTHR12040", "ANTI-SILENCING PROTEIN 1" ], [ "Q99613-1", "protein_xref_panther", "PTHR13937", "EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED" ], [ "P35637-1", "protein_xref_panther", "PTHR23238", "RNA BINDING PROTEIN" ], [ "P35637-1", "protein_xref_panther", "PTHR23238:SF5", "RNA-BINDING PROTEIN FUS" ], [ "Q9UPN3-1", "protein_xref_panther", "PTHR23169", "ENVOPLAKIN" ], [ "Q99613-1", "protein_xref_panther", "PTHR13937", "EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED" ], [ "Q6ICB4-1", "protein_xref_panther", "PTHR22902", "SESQUIPEDALIAN" ], [ "O00458-1", "protein_xref_panther", "PTHR12354", "INTERFERON-RELATED DEVELOPMENTAL REGULATOR" ], [ "Q6ICB0-1", "protein_xref_panther", "PTHR12378", "DESUMOYLATING ISOPEPTIDASE" ], [ "Q6IMN6-1", "protein_xref_panther", "PTHR22922", "GPI-ANCHORED PROTEIN P137" ], [ "O75635-1", "protein_xref_panther", "PTHR11461", "SERINE PROTEASE INHIBITOR, SERPIN" ], [ "P02144-1", "protein_xref_panther", "PTHR47132", "MYOGLOBIN" ], [ "Q6UXY1-1", "protein_xref_panther", "PTHR14206", "BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2" ], [ "Q6UXY1-1", "protein_xref_panther", "PTHR14206:SF5", "BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2-LIKE PROTEIN 2" ], [ "Q8TD31-1", "protein_xref_panther", "PTHR46822", "COILED-COIL ALPHA-HELICAL ROD PROTEIN 1" ], [ "O00501-1", "protein_xref_panther", "PTHR12002", "CLAUDIN" ], [ "Q9BVK2-1", "protein_xref_panther", "PTHR12413", "DOLICHYL GLYCOSYLTRANSFERASE" ], [ "Q9BVK2-1", "protein_xref_panther", "PTHR12413:SF2", "DOLICHYL PYROPHOSPHATE GLC1MAN9GLCNAC2 ALPHA-1,3-GLUCOSYLTRANSFERASE-RELATED" ], [ "P56202-1", "protein_xref_panther", "PTHR12411:SF101", "CATHEPSIN W" ], [ "Q13283-1", "protein_xref_panther", "PTHR10693:SF21", "RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1" ], [ "Q13283-1", "protein_xref_panther", "PTHR10693", "RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN" ], [ "P35659-1", "protein_xref_panther", "PTHR13468", "DEK PROTEIN" ], [ "Q8IYD8-1", "protein_xref_panther", "PTHR14025:SF20", "FANCONI ANEMIA GROUP M PROTEIN" ], [ "Q9H0H3-1", "protein_xref_panther", "PTHR24410:SF10", "KELCH-LIKE PROTEIN 25" ] ] }, "readme": "Name\n - Human UniProtKB Xref PANTHER\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-03-15T15:04:33.347577\n\nModified on\n - 2022-09-26T08:56:48.455309\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_panther.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_panther.csv\n Name: human_protein_xref_panther.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10434\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7278\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"6954\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/human_protein_xref_panther.csv" }