{ "bcoid": "GLY_000112", "title": "Human UniProtKB Xref neXtProt", "description": "The Human UniprotKB Xref neXtProt contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_nextprot.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Nextprot cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_nextprot", "NX_P30613", "" ], [ "Q96J66-1", "protein_xref_nextprot", "NX_Q96J66", "" ], [ "Q96J65-1", "protein_xref_nextprot", "NX_Q96J65", "" ], [ "P40424-1", "protein_xref_nextprot", "NX_P40424", "" ], [ "P40425-1", "protein_xref_nextprot", "NX_P40425", "" ], [ "P40426-1", "protein_xref_nextprot", "NX_P40426", "" ], [ "P40429-1", "protein_xref_nextprot", "NX_P40429", "" ], [ "Q9H2I8-1", "protein_xref_nextprot", "NX_Q9H2I8", "" ], [ "H0YL14-1", "protein_xref_nextprot", "NX_H0YL14", "" ], [ "Q9BXR3-1", "protein_xref_nextprot", "NX_Q69384", "" ], [ "Q9BXR3-1", "protein_xref_nextprot", "NX_Q69383", "" ], [ "Q5VVP1-1", "protein_xref_nextprot", "NX_Q5VVP1", "" ], [ "Q8N865-1", "protein_xref_nextprot", "NX_Q8N865", "" ], [ "A6NIR3-1", "protein_xref_nextprot", "NX_A6NIR3", "" ], [ "Q86VY4-1", "protein_xref_nextprot", "NX_Q86VY4", "" ], [ "Q86VY9-1", "protein_xref_nextprot", "NX_Q86VY9", "" ], [ "Q9Y5S9-1", "protein_xref_nextprot", "NX_Q9Y5S9", "" ], [ "P19075-1", "protein_xref_nextprot", "NX_P19075", "" ], [ "Q99519-1", "protein_xref_nextprot", "NX_Q99519", "" ], [ "O15417-1", "protein_xref_nextprot", "NX_O15417", "" ], [ "Q96RU7-1", "protein_xref_nextprot", "NX_Q96RU7", "" ], [ "Q96RU3-1", "protein_xref_nextprot", "NX_Q96RU3", "" ], [ "Q96RU2-1", "protein_xref_nextprot", "NX_Q96RU2", "" ], [ "Q96RU8-1", "protein_xref_nextprot", "NX_Q96RU8", "" ], [ "Q6ZRV3-1", "protein_xref_nextprot", "NX_Q6ZRV3", "" ], [ "Q6ZRV2-1", "protein_xref_nextprot", "NX_Q6ZRV2", "" ], [ "P16520-1", "protein_xref_nextprot", "NX_P16520", "" ], [ "Q8NCJ5-1", "protein_xref_nextprot", "NX_Q8NCJ5", "" ], [ "Q9Y296-1", "protein_xref_nextprot", "NX_Q9Y296", "" ], [ "Q9Y297-1", "protein_xref_nextprot", "NX_Q9Y297", "" ], [ "Q9Y294-1", "protein_xref_nextprot", "NX_Q9Y294", "" ], [ "Q9Y295-1", "protein_xref_nextprot", "NX_Q9Y295", "" ], [ "Q6ICB4-1", "protein_xref_nextprot", "NX_Q6ICB4", "" ], [ "Q6ICB0-1", "protein_xref_nextprot", "NX_Q6ICB0", "" ], [ "P17693-1", "protein_xref_nextprot", "NX_P17693", "" ], [ "O00507-1", "protein_xref_nextprot", "NX_O00507", "" ], [ "O00505-1", "protein_xref_nextprot", "NX_O00505", "" ], [ "O00501-1", "protein_xref_nextprot", "NX_O00501", "" ], [ "Q8IYD2-1", "protein_xref_nextprot", "NX_Q8IYD2", "" ], [ "Q8IYD1-1", "protein_xref_nextprot", "NX_Q8IYD1", "" ], [ "Q8IYD9-1", "protein_xref_nextprot", "NX_Q8IYD9", "" ], [ "Q8IYD8-1", "protein_xref_nextprot", "NX_Q8IYD8", "" ], [ "Q9H0H3-1", "protein_xref_nextprot", "NX_Q9H0H3", "" ], [ "Q8IVD9-1", "protein_xref_nextprot", "NX_Q8IVD9", "" ], [ "P24903-1", "protein_xref_nextprot", "NX_P24903", "" ], [ "Q8N7C0-1", "protein_xref_nextprot", "NX_Q8N7C0", "" ], [ "Q9NV23-1", "protein_xref_nextprot", "NX_Q9NV23", "" ], [ "Q9NV29-1", "protein_xref_nextprot", "NX_Q9NV29", "" ], [ "Q2M238-1", "protein_xref_nextprot", "NX_Q2M238", "" ], [ "Q9UQ26-6", "protein_xref_nextprot", "NX_Q9UQ26", "" ], [ "P0C7I6-2", "protein_xref_nextprot", "NX_P0C7I6", "" ], [ "P0C7I0-1", "protein_xref_nextprot", "NX_P0C7I0", "" ], [ "Q5HYW2-1", "protein_xref_nextprot", "NX_Q5HYW2", "" ], [ "Q5HYW3-1", "protein_xref_nextprot", "NX_Q5HYW3", "" ], [ "Q9Y5J9-1", "protein_xref_nextprot", "NX_Q9Y5J9", "" ], [ "P45984-1", "protein_xref_nextprot", "NX_P45984", "" ], [ "Q7Z5G4-1", "protein_xref_nextprot", "NX_Q7Z5G4", "" ], [ "Q9Y5J6-1", "protein_xref_nextprot", "NX_Q9Y5J6", "" ], [ "Q9Y5J7-1", "protein_xref_nextprot", "NX_Q9Y5J7", "" ], [ "P27469-1", "protein_xref_nextprot", "NX_P27469", "" ], [ "Q9H239-1", "protein_xref_nextprot", "NX_Q9H239", "" ], [ "Q9H237-1", "protein_xref_nextprot", "NX_Q9H237", "" ], [ "Q8NEQ5-1", "protein_xref_nextprot", "NX_Q8NEQ5", "" ], [ "Q8NEQ6-1", "protein_xref_nextprot", "NX_Q8NEQ6", "" ], [ "Q8N9X3-1", "protein_xref_nextprot", "NX_Q8N9X3", "" ], [ "Q8N9X5-1", "protein_xref_nextprot", "NX_Q8N9X5", "" ], [ "A8MVJ9-1", "protein_xref_nextprot", "NX_A8MVJ9", "" ], [ "Q9H7J1-1", "protein_xref_nextprot", "NX_Q9H7J1", "" ], [ "O60830-1", "protein_xref_nextprot", "NX_O60830", "" ], [ "O60831-1", "protein_xref_nextprot", "NX_O60831", "" ], [ "O60832-1", "protein_xref_nextprot", "NX_O60832", "" ], [ "O14579-1", "protein_xref_nextprot", "NX_O14579", "" ], [ "Q7LDG7-1", "protein_xref_nextprot", "NX_Q7LDG7", "" ], [ "P17900-1", "protein_xref_nextprot", "NX_P17900", "" ], [ "Q9NPI9-1", "protein_xref_nextprot", "NX_Q9NPI9", "" ], [ "Q9NPI8-1", "protein_xref_nextprot", "NX_Q9NPI8", "" ], [ "Q9NPI5-1", "protein_xref_nextprot", "NX_Q9NPI5", "" ], [ "Q9NPI7-1", "protein_xref_nextprot", "NX_Q9NPI7", "" ], [ "Q9NPI6-1", "protein_xref_nextprot", "NX_Q9NPI6", "" ], [ "Q9NPI1-1", "protein_xref_nextprot", "NX_Q9NPI1", "" ], [ "Q9NPI0-1", "protein_xref_nextprot", "NX_Q9NPI0", "" ], [ "Q05397-1", "protein_xref_nextprot", "NX_Q05397", "" ], [ "Q96LT9-1", "protein_xref_nextprot", "NX_Q96LT9", "" ], [ "Q96LT6-1", "protein_xref_nextprot", "NX_Q96LT6", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref neXtProt\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:56:48.501055\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref neXtProt contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to neXtProt database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.\n - \n\nDescription Domain\n Keywords\n - neXtProt\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to neXtProt database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_nextprot.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_nextprot.csv\n Name: human_protein_xref_nextprot.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_nextprot.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20259\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20333\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/human_protein_xref_nextprot.csv" }