{ "bcoid": "GLY_000103", "title": "Mouse UniProtKB Xref MGI", "description": "The Mouse UniProtKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_mgi.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Mgi cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_mgi", "2139220", "Tm9sf4" ], [ "Q8BH27-1", "protein_xref_mgi", "1918264", "Megf9" ], [ "Q8BH26-1", "protein_xref_mgi", "2443862", "Tmem251" ], [ "E9Q287-1", "protein_xref_mgi", "3045353", "Adamts3" ], [ "Q922G0-1", "protein_xref_mgi", "1924909", "Slc25a36" ], [ "O35453-1", "protein_xref_mgi", "1196620", "Hpn" ], [ "Q9JHR7-1", "protein_xref_mgi", "96412", "Ide" ], [ "Q80T32-1", "protein_xref_mgi", "3041203", "Adgrd1" ], [ "B2RXV4-1", "protein_xref_mgi", "2444881", "Flvcr1" ], [ "P62492-1", "protein_xref_mgi", "1858202", "Rab11a" ], [ "E9Q3P4-1", "protein_xref_mgi", "1313302", "Cenpf" ], [ "P63166-1", "protein_xref_mgi", "1197010", "Sumo1" ], [ "A0A087WPJ1-1", "protein_xref_mgi", "1913855", "1700017N19Rik" ], [ "B2RX88-1", "protein_xref_mgi", "2681832", "Cspp1" ], [ "A0A087WRQ3-1", "protein_xref_mgi", "3651476", "Trav1" ], [ "A5H0M4-1", "protein_xref_mgi", "1918202", "Poteg" ], [ "P03899-1", "protein_xref_mgi", "102499", "mt-Nd3" ], [ "Q9CWR0-1", "protein_xref_mgi", "1277173", "Arhgef25" ], [ "O35153-1", "protein_xref_mgi", "1913128", "Bet1l" ], [ "A2RSJ4-1", "protein_xref_mgi", "2442888", "Uhrf1bp1l" ], [ "Q91YE9-1", "protein_xref_mgi", "1918131", "Nt5c1b" ], [ "Q02853-1", "protein_xref_mgi", "97008", "Mmp11" ], [ "P03893-1", "protein_xref_mgi", "102500", "mt-Nd2" ], [ "Q6DYE8-1", "protein_xref_mgi", "2143702", "Enpp3" ], [ "P36536-1", "protein_xref_mgi", "98230", "Sar1a" ], [ "Q9R092-1", "protein_xref_mgi", "1351670", "Hsd17b6" ], [ "Q9QYH9-1", "protein_xref_mgi", "1355317", "Tnfsf14" ], [ "P52479-1", "protein_xref_mgi", "894652", "Usp10" ], [ "A0A0U1RNG7-1", "protein_xref_mgi", "1289222", "Kctd14" ], [ "Q9QYH6-1", "protein_xref_mgi", "1930187", "Maged1" ], [ "Q08AU9-1", "protein_xref_mgi", "1916316", "1810010H24Rik" ], [ "Q08AU7-1", "protein_xref_mgi", "1915765", "Myadml2" ], [ "Q5EBH1-1", "protein_xref_mgi", "1926375", "Rassf5" ], [ "O35309-1", "protein_xref_mgi", "1928368", "Nmi" ], [ "Q80YU0-1", "protein_xref_mgi", "3607711", "Abhd16b" ], [ "Q8BTY1-1", "protein_xref_mgi", "1917516", "Kyat1" ], [ "Q61216-1", "protein_xref_mgi", "1100512", "Mre11a" ], [ "Q5SRT8-1", "protein_xref_mgi", "2685723", "Ccnjl" ], [ "Q9JHX3-1", "protein_xref_mgi", "1890475", "Il21r" ], [ "P70414-1", "protein_xref_mgi", "107956", "Slc8a1" ], [ "P70412-1", "protein_xref_mgi", "1202881", "Cuzd1" ], [ "Q3TLD5-1", "protein_xref_mgi", "1342294", "Uri1" ], [ "A0A0U1RNG7-1", "protein_xref_mgi", "1289222", "Kctd14" ], [ "Q9QYC7-1", "protein_xref_mgi", "1927655", "Ggcx" ], [ "P10852-1", "protein_xref_mgi", "96955", "Slc3a2" ], [ "Q8K2F8-1", "protein_xref_mgi", "1914320", "Lsm14a" ], [ "B2RRA8-1", "protein_xref_mgi", "3037815", "Zfp114" ], [ "Q3UMR0-1", "protein_xref_mgi", "2444103", "Ankrd27" ], [ "P70419-1", "protein_xref_mgi", "894695", "Galnt3" ], [ "Q9EP78-1", "protein_xref_mgi", "1891767", "Chst7" ], [ "Q9EP79-1", "protein_xref_mgi", "2148512", "Vmn1r52" ], [ "Q3URK3-1", "protein_xref_mgi", "1098693", "Tet1" ], [ "Q9EP72-1", "protein_xref_mgi", "1920274", "Emc7" ], [ "Q9EP73-1", "protein_xref_mgi", "1926446", "Cd274" ], [ "Q9EP71-1", "protein_xref_mgi", "1922896", "Rai14" ], [ "Q9EP75-1", "protein_xref_mgi", "1927669", "Cyp4f14" ], [ "Q8VF62-1", "protein_xref_mgi", "3030711", "Or8b9" ], [ "Q8CHS4-1", "protein_xref_mgi", "2685422", "Plcxd1" ], [ "D3YWQ0-1", "protein_xref_mgi", "2443430", "Dgki" ], [ "P30282-1", "protein_xref_mgi", "88315", "Ccnd3" ], [ "P97411-1", "protein_xref_mgi", "96391", "Ica1" ], [ "Q3UHI0-1", "protein_xref_mgi", "101859", "Ccser2" ], [ "S4R213-1", "protein_xref_mgi", "2448566", "Lactbl1" ], [ "Q91VV4-1", "protein_xref_mgi", "2181193", "Dennd2d" ], [ "P53702-1", "protein_xref_mgi", "106911", "Hccs" ], [ "Q9Z2V6-1", "protein_xref_mgi", "1333784", "Hdac5" ], [ "O08911-1", "protein_xref_mgi", "1353438", "Mapk12" ], [ "Q9CWR2-1", "protein_xref_mgi", "1916976", "Smyd3" ], [ "Q80WC9-1", "protein_xref_mgi", "2442517", "Aasdh" ], [ "O08912-1", "protein_xref_mgi", "894693", "Galnt1" ], [ "O08915-1", "protein_xref_mgi", "109622", "Aip" ], [ "O08914-1", "protein_xref_mgi", "109609", "Faah" ], [ "O08917-1", "protein_xref_mgi", "1100500", "Flot1" ], [ "Q80WC3-1", "protein_xref_mgi", "3648294", "Tnrc18" ], [ "O08918-1", "protein_xref_mgi", "1095734", "Ccng2" ], [ "Q80WC1-1", "protein_xref_mgi", "2444236", "Ubn2" ], [ "Q80WC7-1", "protein_xref_mgi", "2443267", "Agfg2" ], [ "Q9JHY4-1", "protein_xref_mgi", "2445041", "Wfdc15b" ], [ "Q9D0M3-1", "protein_xref_mgi", "1913695", "Cyc1" ], [ "Q9CQA0-1", "protein_xref_mgi", "1913820", "Cenpm" ], [ "Q91VH6-1", "protein_xref_mgi", "1924140", "Memo1" ], [ "Q9WTP3-1", "protein_xref_mgi", "1353422", "Spdef" ], [ "Q9Z1B7-1", "protein_xref_mgi", "1346864", "Mapk13" ], [ "B8JJZ7-1", "protein_xref_mgi", "1890752", "Zfp81" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref MGI\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-03-15T12:11:47.098435\n\nModified on\n - 2022-09-26T08:56:48.514114\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to MGI database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of mouse health and disease.\n\nDescription Domain\n Keywords\n - gene symbol\n - gene name\n - MGI\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to MGI database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_mgi.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_xref_mgi.csv\n Name: mouse_protein_xref_mgi.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_xref_mgi.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21801\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"22183\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"22232\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/mouse_protein_xref_mgi.csv" }