{ "bcoid": "GLY_000090", "title": "Human UniProtKB Xref Bgee", "description": "The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_bgee", "ENSG00000143627", "Expressed in liver and 52 other tissues" ], [ "Q92994-1", "protein_xref_bgee", "ENSG00000185024", "Expressed in sural nerve and 127 other tissues" ], [ "Q9Y2R9-1", "protein_xref_bgee", "ENSG00000125445", "Expressed in gastrocnemius and 200 other tissues" ], [ "Q92614-1", "protein_xref_bgee", "ENSG00000196535", "Expressed in gastrocnemius and 93 other tissues" ], [ "P10242-1", "protein_xref_bgee", "ENSG00000118513", "Expressed in mucosa of sigmoid colon and 124 other tissues" ], [ "Q9GZW8-1", "protein_xref_bgee", "ENSG00000166927", "Expressed in monocyte and 137 other tissues" ], [ "O14817-1", "protein_xref_bgee", "ENSG00000214063", "Expressed in stromal cell of endometrium and 197 other tissues" ], [ "A2RU30-1", "protein_xref_bgee", "ENSG00000135426", "Expressed in prefrontal cortex and 118 other tissues" ], [ "Q6UWY5-1", "protein_xref_bgee", "ENSG00000183801", "Expressed in parietal pleura and 145 other tissues" ], [ "Q6IQ23-1", "protein_xref_bgee", "ENSG00000166689", "Expressed in sural nerve and 140 other tissues" ], [ "Q8N6H7-1", "protein_xref_bgee", "ENSG00000149182", "Expressed in skin of leg and 197 other tissues" ], [ "Q96J66-1", "protein_xref_bgee", "ENSG00000121270", "Expressed in right lobe of liver and 86 other tissues" ], [ "Q96J65-1", "protein_xref_bgee", "ENSG00000140798", "Expressed in left testis and 55 other tissues" ], [ "P25705-1", "protein_xref_bgee", "ENSG00000152234", "Expressed in heart right ventricle and 214 other tissues" ], [ "Q6UW68-1", "protein_xref_bgee", "ENSG00000105518", "Expressed in left adrenal gland cortex and 176 other tissues" ], [ "Q9BUZ4-1", "protein_xref_bgee", "ENSG00000076604", "Expressed in olfactory segment of nasal mucosa and 186 other tissues" ], [ "Q8NC06-1", "protein_xref_bgee", "ENSG00000181513", "Expressed in right lobe of liver and 127 other tissues" ], [ "Q8IYT4-1", "protein_xref_bgee", "ENSG00000167216", "Expressed in right uterine tube and 105 other tissues" ], [ "Q53F39-1", "protein_xref_bgee", "ENSG00000154889", "Expressed in granulocyte and 194 other tissues" ], [ "A6NC51-1", "protein_xref_bgee", "ENSG00000180061", "Expressed in monocyte and 93 other tissues" ], [ "Q13829-1", "protein_xref_bgee", "ENSG00000109079", "Expressed in hair follicle and 209 other tissues" ], [ "Q8NBW4-1", "protein_xref_bgee", "ENSG00000177058", "Expressed in secondary oocyte and 171 other tissues" ], [ "Q14766-1", "protein_xref_bgee", "ENSG00000049323", "Expressed in blood vessel layer and 207 other tissues" ], [ "P40424-1", "protein_xref_bgee", "ENSG00000185630", "Expressed in cortical plate and 210 other tissues" ], [ "P40425-1", "protein_xref_bgee", "ENSG00000204304", "Expressed in right lobe of thyroid gland and 96 other tissues" ], [ "P40426-1", "protein_xref_bgee", "ENSG00000167081", "Expressed in left ovary and 175 other tissues" ], [ "P40429-1", "protein_xref_bgee", "ENSG00000142541", "Expressed in left ovary and 93 other tissues" ], [ "P62873-1", "protein_xref_bgee", "ENSG00000078369", "Expressed in cortical plate and 209 other tissues" ], [ "P11310-1", "protein_xref_bgee", "ENSG00000117054", "Expressed in jejunal mucosa and 204 other tissues" ], [ "P53779-1", "protein_xref_bgee", "ENSG00000109339", "Expressed in adrenal tissue and 132 other tissues" ], [ "Q9H2I8-1", "protein_xref_bgee", "ENSG00000148655", "Expressed in calcaneal tendon and 143 other tissues" ], [ "O60506-1", "protein_xref_bgee", "ENSG00000135316", "Expressed in ventricular zone and 204 other tissues" ], [ "Q969N2-1", "protein_xref_bgee", "ENSG00000124155", "Expressed in cardia of stomach and 178 other tissues" ], [ "P09471-1", "protein_xref_bgee", "ENSG00000087258", "Expressed in cortical plate and 185 other tissues" ], [ "P07237-1", "protein_xref_bgee", "ENSG00000185624", "Expressed in stromal cell of endometrium and 205 other tissues" ], [ "Q9NXE4-1", "protein_xref_bgee", "ENSG00000136699", "Expressed in pituitary gland and 94 other tissues" ], [ "Q9Y4J8-1", "protein_xref_bgee", "ENSG00000134769", "Expressed in medial globus pallidus and 176 other tissues" ], [ "Q5ZPR3-1", "protein_xref_bgee", "ENSG00000103855", "Expressed in stromal cell of endometrium and 165 other tissues" ], [ "Q9NQU5-1", "protein_xref_bgee", "ENSG00000137843", "Expressed in gingival epithelium and 144 other tissues" ], [ "H0YL14-1", "protein_xref_bgee", "ENSG00000238227", "Expressed in granulocyte and 153 other tissues" ], [ "P29692-1", "protein_xref_bgee", "ENSG00000104529", "Expressed in calcaneal tendon and 95 other tissues" ], [ "Q9GZS3-1", "protein_xref_bgee", "ENSG00000140395", "Expressed in tibia and 208 other tissues" ], [ "Q96R06-1", "protein_xref_bgee", "ENSG00000076382", "Expressed in left testis and 128 other tissues" ], [ "Q96L93-1", "protein_xref_bgee", "ENSG00000089177", "Expressed in sural nerve and 179 other tissues" ], [ "Q969W1-1", "protein_xref_bgee", "ENSG00000171307", "Expressed in pancreatic ductal cell and 177 other tissues" ], [ "Q13228-1", "protein_xref_bgee", "ENSG00000143416", "Expressed in mucosa of transverse colon and 200 other tissues" ], [ "P02741-1", "protein_xref_bgee", "ENSG00000132693", "Expressed in right lobe of liver and 86 other tissues" ], [ "P29353-1", "protein_xref_bgee", "ENSG00000160691", "Expressed in stromal cell of endometrium and 204 other tissues" ], [ "Q5VVP1-1", "protein_xref_bgee", "ENSG00000185775", "Expressed in left testis and 6 other tissues" ], [ "Q9H4G0-1", "protein_xref_bgee", "ENSG00000088367", "Expressed in superior vestibular nucleus and 191 other tissues" ], [ "Q8N865-1", "protein_xref_bgee", "ENSG00000153790", "Expressed in sperm and 128 other tissues" ], [ "Q9Y547-1", "protein_xref_bgee", "ENSG00000081870", "Expressed in oocyte and 209 other tissues" ], [ "A6NIR3-1", "protein_xref_bgee", "ENSG00000172650", "Expressed in body of pancreas and 93 other tissues" ], [ "Q8N720-1", "protein_xref_bgee", "ENSG00000197343", "Expressed in ileal mucosa and 179 other tissues" ], [ "Q92562-1", "protein_xref_bgee", "ENSG00000112367", "Expressed in middle temporal gyrus and 204 other tissues" ], [ "Q86VY4-1", "protein_xref_bgee", "ENSG00000180543", "Expressed in adult organism and 208 other tissues" ], [ "Q86VY9-1", "protein_xref_bgee", "ENSG00000164484", "Expressed in secondary oocyte and 148 other tissues" ], [ "Q9Y5S9-1", "protein_xref_bgee", "ENSG00000265241", "Expressed in ganglionic eminence and 208 other tissues" ], [ "P38935-1", "protein_xref_bgee", "ENSG00000132740", "Expressed in mucosa of stomach and 117 other tissues" ], [ "P41250-1", "protein_xref_bgee", "ENSG00000106105", "Expressed in secondary oocyte and 215 other tissues" ], [ "O15078-1", "protein_xref_bgee", "ENSG00000198707", "Expressed in right uterine tube and 186 other tissues" ], [ "Q8TF17-1", "protein_xref_bgee", "ENSG00000169247", "Expressed in corpus callosum and 108 other tissues" ], [ "Q8WV28-1", "protein_xref_bgee", "ENSG00000095585", "Expressed in tongue squamous epithelium and 171 other tissues" ], [ "Q8TB36-1", "protein_xref_bgee", "ENSG00000104381", "Expressed in endothelial cell and 157 other tissues" ], [ "O60733-1", "protein_xref_bgee", "ENSG00000184381", "Expressed in right uterine tube and 156 other tissues" ], [ "P19075-1", "protein_xref_bgee", "ENSG00000127324", "Expressed in colonic mucosa and 176 other tissues" ], [ "Q8NI17-1", "protein_xref_bgee", "ENSG00000164509", "Expressed in monocyte and 111 other tissues" ], [ "Q3C1V0-1", "protein_xref_bgee", "ENSG00000214782", "Expressed in duodenum and 11 other tissues" ], [ "Q96QE4-1", "protein_xref_bgee", "ENSG00000185158", "Expressed in cerebellar cortex and 97 other tissues" ], [ "Q9P0K1-1", "protein_xref_bgee", "ENSG00000008277", "Expressed in lateral nuclear group of thalamus and 155 other tissues" ], [ "Q99519-1", "protein_xref_bgee", "ENSG00000184494", "Expressed in placenta and 4 other tissues" ], [ "O15417-1", "protein_xref_bgee", "ENSG00000182095", "Expressed in sural nerve and 184 other tissues" ], [ "Q96RU7-1", "protein_xref_bgee", "ENSG00000101255", "Expressed in right lobe of liver and 127 other tissues" ], [ "P49841-1", "protein_xref_bgee", "ENSG00000082701", "Expressed in calcaneal tendon and 195 other tissues" ], [ "O75448-1", "protein_xref_bgee", "ENSG00000008838", "Expressed in right hemisphere of cerebellum and 179 other tissues" ], [ "Q96RU3-1", "protein_xref_bgee", "ENSG00000187239", "Expressed in corpus callosum and 209 other tissues" ], [ "Q96RU2-1", "protein_xref_bgee", "ENSG00000048028", "Expressed in gastrocnemius and 183 other tissues" ], [ "O14964-1", "protein_xref_bgee", "ENSG00000185359", "Expressed in right uterine tube and 202 other tissues" ], [ "Q01813-1", "protein_xref_bgee", "ENSG00000067057", "Expressed in tendon of biceps brachii and 204 other tissues" ], [ "Q96RU8-1", "protein_xref_bgee", "ENSG00000173334", "Expressed in mucosa of urinary bladder and 196 other tissues" ], [ "Q96IK0-1", "protein_xref_bgee", "ENSG00000091947", "Expressed in metanephros cortex and 152 other tissues" ], [ "Q7Z7G2-1", "protein_xref_bgee", "ENSG00000166569", "Expressed in cerebellar cortex and 12 other tissues" ], [ "Q9UDX5-1", "protein_xref_bgee", "ENSG00000242114", "Expressed in mucosa of transverse colon and 93 other tissues" ], [ "Q9H9Q4-1", "protein_xref_bgee", "ENSG00000187736", "Expressed in rectum and 130 other tissues" ] ] }, "readme": "Name\n - Human UniProtKB Xref Bgee\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:48:18.831928\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_bgee.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_bgee.csv\n Name: human_protein_xref_bgee.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/human_protein_xref_bgee.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19402\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19478\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"10347\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/human_protein_xref_bgee.csv" }