{ "bcoid": "GLY_000034", "title": "Mouse Protein Information (UniProtKB)", "description": "The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with ...", "filename": "mouse_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9WVQ1-1...", "MAGI2_MOUSE..." ], [ "Q62267-1...", "SPR1B_MOUSE..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q9WVQ1-1", "MAGI2_MOUSE", "140919", "1275" ], [ "Q62267-1", "SPR1B_MOUSE", "16636", "153" ], [ "Q9DB34-1", "CHM2A_MOUSE", "25134", "222" ], [ "Q80ZM8-1", "CRLS1_MOUSE", "32502", "303" ], [ "D3YTW8-1", "D3YTW8_MOUSE", "35552", "314" ], [ "G5E8K6-1", "MOT6_MOUSE", "51018", "468" ], [ "Q8K3F2-1", "MMP21_MOUSE", "65454", "568" ], [ "B1AXS0-1", "B1AXS0_MOUSE", "9937", "87" ], [ "Q6PFX9-1", "TNKS1_MOUSE", "140944", "1320" ], [ "Q8VES9-1", "Q8VES9_MOUSE", "34995", "310" ], [ "Q8C2A2-1", "SEN54_MOUSE", "59083", "525" ], [ "J3QN89-1", "J3QN89_MOUSE", "46966", "436" ], [ "Q02395-1", "MTF2_MOUSE", "66924", "593" ], [ "Q7TMD7-1", "DSG4_MOUSE", "114449", "1041" ], [ "Q8R1N4-1", "NUDC3_MOUSE", "40890", "363" ], [ "O35892-1", "SP100_MOUSE", "54727", "482" ], [ "Q5FWA1-1", "Q5FWA1_MOUSE", "57778", "498" ], [ "A0A2I3BRZ3-1", "A0A2I3BRZ3_MOUSE", "86112", "793" ], [ "P01811-1", "HVM41_MOUSE", "13001", "117" ], [ "B1AXB9-1", "B1AXB9_MOUSE", "46783", "411" ], [ "Q8C0N1-1", "KIF2B_MOUSE", "75469", "668" ], [ "Q9D4P0-1", "ARL5B_MOUSE", "20375", "179" ], [ "A2BI74-1", "A2BI74_MOUSE", "19706", "170" ], [ "Q62048-1", "PEA15_MOUSE", "15054", "130" ], [ "Q99MV1-1", "TDRD1_MOUSE", "129696", "1172" ], [ "Q61200-1", "NXPH1_MOUSE", "31048", "271" ], [ "Q921C1-1", "CXG3_MOUSE", "30293", "269" ], [ "B9EKH0-1", "B9EKH0_MOUSE", "34560", "299" ], [ "Q8CGC7-1", "SYEP_MOUSE", "170079", "1512" ], [ "Q9ESX5-1", "DKC1_MOUSE", "57402", "509" ], [ "Q3U552-1", "Q3U552_MOUSE", "9887", "87" ], [ "Q8VFI2-1", "Q8VFI2_MOUSE", "35948", "313" ], [ "Q91YP0-1", "L2HDH_MOUSE", "50899", "464" ], [ "A7L9Z8-1", "AT2C2_MOUSE", "102528", "944" ], [ "Q9QUM9-1", "PSA6_MOUSE", "27372", "246" ], [ "Q9D542-1", "Q9D542_MOUSE", "17182", "155" ], [ "Q9D0L4-1", "ADCK1_MOUSE", "59736", "525" ], [ "Q0PHV7-1", "DACT3_MOUSE", "63287", "610" ], [ "Q8BZA7-1", "GPR26_MOUSE", "37747", "337" ], [ "K7N724-1", "K7N724_MOUSE", "30914", "263" ], [ "P11438-1", "LAMP1_MOUSE", "43865", "406" ], [ "E9PZU5-1", "E9PZU5_MOUSE", "98241", "856" ], [ "Q7TSH8-1", "TMM94_MOUSE", "151796", "1360" ], [ "Q9CZ62-1", "CEP97_MOUSE", "94641", "856" ], [ "A0A1Y7VJN6-1", "A0A1Y7VJN6_MOUSE", "44010", "399" ], [ "E9Q4X7-1", "E9Q4X7_MOUSE", "35571", "319" ], [ "P14901-1", "HMOX1_MOUSE", "32929", "289" ], [ "Q8BT07-1", "CEP55_MOUSE", "53930", "462" ], [ "Q99LE3-1", "LYSM3_MOUSE", "34258", "305" ], [ "Q8VIB5-1", "BARH2_MOUSE", "41459", "384" ], [ "Q3TVC7-1", "CCDB1_MOUSE", "39356", "356" ], [ "E9Q0A2-1", "E9Q0A2_MOUSE", "24795", "213" ], [ "A0A075B5Q4-1", "A0A075B5Q4_MOUSE", "13075", "117" ], [ "Q9CRB3-1", "HIUH_MOUSE", "13559", "118" ], [ "Q8BHW2-1", "OSCP1_MOUSE", "43232", "379" ], [ "Q52KR3-1", "PRUN2_MOUSE", "339516", "3084" ], [ "Q9JJY4-1", "DDX20_MOUSE", "91710", "825" ], [ "P62761-1", "VISL1_MOUSE", "22142", "191" ], [ "Q61735-1", "CD47_MOUSE", "33098", "303" ], [ "Q05A80-1", "CAPR2_MOUSE", "114491", "1031" ], [ "A0A140T8M6-1", "A0A140T8M6_MOUSE", "13031", "119" ], [ "Q60632-1", "COT1_MOUSE", "46085", "422" ], [ "Q587J6-1", "LITD1_MOUSE", "88189", "782" ], [ "Q8CH77-1", "NAV1_MOUSE", "202368", "1875" ], [ "E9Q573-1", "E9Q573_MOUSE", "33311", "300" ], [ "Q61820-1", "RANT_MOUSE", "24452", "216" ], [ "P97473-1", "TRBP2_MOUSE", "38842", "365" ], [ "Q9DA19-1", "CIR1_MOUSE", "51838", "450" ], [ "Q9EPK6-1", "SIL1_MOUSE", "52430", "465" ], [ "Q8VEC3-1", "AGRF1_MOUSE", "101469", "908" ], [ "Q9CQ33-1", "LZTR1_MOUSE", "94476", "837" ], [ "A2AVJ5-1", "PRR5L_MOUSE", "40982", "370" ], [ "Q7TRM0-1", "Q7TRM0_MOUSE", "36033", "323" ], [ "O35392-1", "FOXD2_MOUSE", "48937", "492" ], [ "Q9Z0S4-1", "CLD13_MOUSE", "23504", "211" ], [ "A0A0J9YU01-1", "A0A0J9YU01_MOUSE", "55006", "481" ], [ "Q569N2-1", "ANR37_MOUSE", "17262", "159" ], [ "Q9CR08-1", "RPP29_MOUSE", "25637", "221" ], [ "P22389-1", "EDN2_MOUSE", "19538", "175" ], [ "Q3UWA4-1", "TRI40_MOUSE", "27903", "246" ], [ "Q6IR41-1", "C1QT6_MOUSE", "29081", "264" ], [ "Q921Q3-1", "ALG1_MOUSE", "54417", "482" ], [ "Q6NS52-1", "DGKB_MOUSE", "90272", "802" ], [ "P13439-1", "UMPS_MOUSE", "52292", "481" ] ] }, "readme": "Name\n - Mouse Protein Information (UniProtKB)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2019-01-23T17:21:05.901631\n\nModified on\n - 2022-09-26T08:48:18.846390\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019_09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_info_uniprotkb.csv\n Name: mouse_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/mouse_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21968\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"21968\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"19556\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2144\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/mouse_protein_info_uniprotkb.csv" }