{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "glycan_masterlist.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_masterlist.csv"
                }
            },
            {
                "uri": {
                    "filename": "monocounts.tsv",
                    "uri": "/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/monocounts.tsv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_monosaccharide_composition_advanced.csv",
                    "filename": "glycan_monosaccharide_composition_advanced.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/glycan_monosaccharide_composition_advanced.stat.csv",
                    "filename": "glycan_monosaccharide_composition_advanced.stat.csv"
                }
            }
        ]
    },
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Glycan",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Monosaccharide composition",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "affiliation": "Georgetown University",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Nathan Edwards",
                "email": ""
            }
        ],
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "created": "2022-03-10T15:38:14.531948",
        "modified": "2022-09-26T09:08:12.723112",
        "version": "v-2.0.3",
        "name": "Glycan monosaccharide advanced compositions"
    },
    "description_domain": {
        "keywords": [
            "Glycan",
            "GlyTouCan accession",
            "Monosaccharide composition"
        ],
        "pipeline_steps": [
            {
                "name": "make-species-agnostic-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2downloads/glytoucan/v-2.0.3/export/monocounts.tsv",
                        "filename": "monocounts.tsv"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/v-2.0.3/reviewed/glycan_monosaccharide_composition_advanced.csv",
                        "filename": "glycan_monosaccharide_composition_advanced.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the accession master list. Refer to the usability domain for more information on master list"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py",
                    "filename": "make-species-agnostic-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "The dataset provides the monosaccharide compositions for the associated glycans (GlyTouCan Accession). It provides the count for sugar residues such as Hexose (Hex), N-Acetylhexosamine (HexNAc), Deoxyhexose (dHex), N-Acetylneuraminic Acid ( NeuAc), N-Glycolylneuraminic Acid (NeuGc), Other (Xxx). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/"
    ],
    "object_id": "https://biocomputeobject.org/GLY_000621/v-2.0.3",
    "spec_version": "1.3.0",
    "etag": "560fecfcdd049586b6051281b9f97364",
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}