{
    "object_id": "https://biocomputeobject.org/GLY_000408/v-2.0.3",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Glycoprotein",
                        "category_name": "protein"
                    },
                    {
                        "category_value": "Images",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "gif",
                        "category_name": "file_type"
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                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    },
                    {
                        "category_value": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
                        "category_name": "species"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "3D model of SARS-CoV-2 spike glycoprotein (Animated GIF)",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Xiying Ding",
                "email": "xzd@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rkahsay@gwu.edu"
            },
            {
                "affiliation": "Complex Carbohydrate Research Center",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Dr. Robert Woods",
                "email": "rwoods.glycam@gmail.com"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Amanda Bell",
                "email": "amandab2140@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jonathon Keeney",
                "email": "keeneyjg@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "name": "Millicent Quartey",
                "email": "mquartey@email.gwu.edu"
            }
        ],
        "created": "2020-03-30T14:24:48.403793",
        "modified": "2022-09-26T09:05:56.463918",
        "version": "v-2.0.3"
    },
    "description_domain": {
        "keywords": [
            "Glycoprotein",
            "images"
        ],
        "pipeline_steps": [
            {
                "name": "",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "http://data.glygen.org/ln2data/releases/data/v-2.0.3/source/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif",
                        "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif"
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                ],
                "output_list": [
                    {
                        "uri": "http://data.glygen.org/ln2data/releases/data/v-2.0.3/reviewed/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif",
                        "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif"
                    }
                ],
                "prerequisite": [],
                "description": "The input animated gif file was downloaded from the GlyGen wiki (https://wiki.glygen.org/index.php/SARS-CoV-2_spike_glycoprotein)"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "",
        "software_prerequisites": [
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                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
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            }
        ],
        "script": [
            {
                "uri": {
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                    "filename": ""
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        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "Based on the RCSB PDB struture 6VSB (https://www.rcsb.org/structure/6vsb), a 3-D model of SARS-CoV-2 (TaxID:2697049) spike glycoprotein is generated by Prof. Dr. Robert Woods's group at the Complex Carbohydrate Research Center, University of Georgia. The 3D model can be downloaded as an animated GIF through this GlyGen data object. For more information visit GlyGen wiki (https://wiki.glygen.org/index.php/SARS-CoV-2_spike_glycoprotein)"
    ],
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    "io_domain": {
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                    "uri": "/data/shared/glyds/downloads/covid_media/03_30_2020/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif"
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        ],
        "output_subdomain": [
            {
                "mediatype": "gif",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif",
                    "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif"
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            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.stat.csv",
                    "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.stat.csv"
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            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}