{ "bcoid": "GLY_000682", "title": "Fruitfly Phosphorylation Sites (UniProtKB)", "description": "The Fruitfly Phosphorylation Sites (UniProtKB) dataset contains fruitfly [taxid:7227] UniProtKB canonical ...", "filename": "fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9W5E0-1...", "930..." ], [ "Q9W5E0-1...", "930..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q9W5E0-1", "930", "Thr", "", "", "protein_xref_uniprotkb", "Q9W5E0", "protein_xref_uniprotkb", "Q9W5E0", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q9W5E0-1", "930", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9W5E0", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P98081-1", "1768", "Tyr", "", "", "protein_xref_uniprotkb", "P98081", "protein_xref_uniprotkb", "P98081", "Phosphotyrosine", "Phosphotyrosine; by ABL", "" ], [ "P22700-1", "240", "Ser", "", "", "protein_xref_uniprotkb", "P22700", "protein_xref_uniprotkb", "P22700", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P22700-1", "240", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P22700", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9U5L1-1", "240", "Ser", "", "", "protein_xref_uniprotkb", "Q9U5L1", "protein_xref_uniprotkb", "Q9U5L1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9U5L1-1", "240", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9U5L1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2181", "Ser", "", "", "protein_xref_uniprotkb", "Q8IN94", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2181", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P98081-1", "1905", "Tyr", "", "", "protein_xref_uniprotkb", "P98081", "protein_xref_uniprotkb", "P98081", "Phosphotyrosine", "Phosphotyrosine; by ABL", "" ], [ "Q24292-1", "3469", "Ser", "", "", "protein_xref_uniprotkb", "Q24292", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24292-1", "3469", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "4938", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "4938", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "2410", "Thr", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q8SX83-1", "2410", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q8SX83-1", "3653", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "3653", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7YZH1-1", "3110", "Ser", "", "", "protein_xref_uniprotkb", "Q7YZH1", "protein_xref_uniprotkb", "Q7YZH1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7YZH1-1", "3110", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q7YZH1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2081", "Ser", "", "", "protein_xref_uniprotkb", "Q8IN94", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2081", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W596-1", "3067", "Ser", "", "", "protein_xref_uniprotkb", "Q9W596", "protein_xref_uniprotkb", "Q9W596", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W596-1", "3067", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q9W596", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24292-1", "3465", "Ser", "", "", "protein_xref_uniprotkb", "Q24292", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24292-1", "3465", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W596-1", "3075", "Ser", "", "", "protein_xref_uniprotkb", "Q9W596", "protein_xref_uniprotkb", "Q9W596", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W596-1", "3075", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q9W596", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W596-1", "4950", "Ser", "", "", "protein_xref_uniprotkb", "Q9W596", "protein_xref_uniprotkb", "Q9W596", "Phosphoserine", "Phosphoserine; by GSK3-beta", "" ], [ "Q8SX83-1", "3650", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "3650", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2169", "Ser", "", "", "protein_xref_uniprotkb", "Q8IN94", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2169", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IN94", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V5N8-1", "3199", "Ser", "", "", "protein_xref_uniprotkb", "Q9V5N8", "protein_xref_uniprotkb", "Q9V5N8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V5N8-1", "3199", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9V5N8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "3408", "Thr", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q8SX83-1", "3408", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q7YZH1-1", "1346", "Thr", "", "", "protein_xref_uniprotkb", "Q7YZH1", "protein_xref_uniprotkb", "Q7YZH1", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q7YZH1-1", "1346", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q7YZH1", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q9VGP1-1", "1424", "Ser", "", "", "protein_xref_uniprotkb", "Q9VGP1", "protein_xref_uniprotkb", "Q9VGP1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VGP1-1", "1424", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VGP1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "2403", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "2403", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "2584", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "2584", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "O46072-1", "529", "Ser", "", "", "protein_xref_uniprotkb", "O46072", "protein_xref_uniprotkb", "O46072", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "O46072-1", "529", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "O46072", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9XTN2-1", "555", "Ser", "", "", "protein_xref_uniprotkb", "Q9XTN2", "protein_xref_uniprotkb", "Q9XTN2", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9XTN2-1", "555", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9XTN2", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "1907", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "1907", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VQH2-1", "1105", "Tyr", "", "", "protein_xref_uniprotkb", "Q9VQH2", "protein_xref_uniprotkb", "Q9VQH2", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "Q26263-1", "408", "Ser", "", "", "protein_xref_uniprotkb", "Q26263", "protein_xref_uniprotkb", "Q26263", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q26263-1", "408", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q26263", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P29617-1", "479", "Ser", "", "", "protein_xref_uniprotkb", "P29617", "protein_xref_uniprotkb", "P29617", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P29617-1", "479", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P29617", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "3657", "Ser", "", "", "protein_xref_uniprotkb", "Q8SX83", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8SX83-1", "3657", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8SX83", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VDY1-1", "230", "Ser", "", "", "protein_xref_uniprotkb", "Q9VDY1", "protein_xref_uniprotkb", "Q9VDY1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VDY1-1", "230", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VDY1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P25439-1", "1407", "Ser", "", "", "protein_xref_uniprotkb", "P25439", "protein_xref_uniprotkb", "P25439", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P25439-1", "1407", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P25439", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q45VV3-1", "146", "Ser", "", "", "protein_xref_uniprotkb", "Q45VV3", "protein_xref_uniprotkb", "Q45VV3", "Phosphoserine", "Phosphoserine; by CDK7", "" ], [ "P23128-1", "29", "Ser", "", "", "protein_xref_uniprotkb", "P23128", "protein_xref_uniprotkb", "P23128", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P23128-1", "29", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P23128", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VAN6-1", "29", "Ser", "", "", "protein_xref_uniprotkb", "Q9VAN6", "protein_xref_uniprotkb", "Q9VAN6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VAN6-1", "29", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VAN6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VJQ4-1", "29", "Ser", "", "", "protein_xref_uniprotkb", "Q9VJQ4", "protein_xref_uniprotkb", "Q9VJQ4", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VJQ4-1", "29", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VJQ4", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P35220-1", "662", "Ser", "", "", "protein_xref_uniprotkb", "P35220", "protein_xref_uniprotkb", "P35220", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P35220-1", "662", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P35220", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q23977-1", "662", "Ser", "", "", "protein_xref_uniprotkb", "Q23977", "protein_xref_uniprotkb", "Q23977", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q23977-1", "662", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q23977", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P16568-1", "288", "Ser", "", "", "protein_xref_uniprotkb", "P16568", "protein_xref_uniprotkb", "P16568", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P16568-1", "288", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P16568", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P51123-1", "288", "Ser", "", "", "protein_xref_uniprotkb", "P51123", "protein_xref_uniprotkb", "P51123", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P51123-1", "288", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P51123", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24276-1", "13", "Ser", "", "", "protein_xref_uniprotkb", "Q24276", "protein_xref_uniprotkb", "Q24276", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24276-1", "13", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q24276", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24276-1", "13", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24276", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q26263-1", "411", "Ser", "", "", "protein_xref_uniprotkb", "Q26263", "protein_xref_uniprotkb", "Q26263", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q26263-1", "411", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q26263", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q86B79-1", "411", "Ser", "", "", "protein_xref_uniprotkb", "Q86B79", "protein_xref_uniprotkb", "Q86B79", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q86B79-1", "411", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q86B79", "Phosphoserine", "Phosphoserine", "ECO_0000269" ] ] }, "readme": "Name\n - Fruitfly Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-x.x.x\n\nCreated on\n - 2022-09-06T09:53:09.953304\n\nModified on\n - 2022-09-06T09:53:30.847755\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Phosphorylation Sites (UniProtKB) dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2022_03/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: fruitfly_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"782\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"1279\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"825\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"782\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"40\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"6\"", "downloadurl": "/ln2data/releases/data/v-2.0.2/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv" }