{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P31392-1...", "Effects of a..." ], [ "G3V681-1...", "DNA binding ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P31392-1", "Effects of adrenomedullin on the glomerular adrenomedullin system in a rat model of anti-thy1 glomerulonephritis.", "Nephron. Experimental nephrology", "2010", "Geissler B, Plank C, Hartner A, Amann K, Struwe FG, Hilgers KF, Rascher W, Dotsch J", "protein_xref_pubmed", "20431304", "protein_xref_refseq", "NP_445754" ], [ "G3V681-1", "DNA binding and helicase actions of mouse MCM4/6/7 helicase.", "Nucleic acids research", "2005", "You Z, Masai H", "protein_xref_pubmed", "15917436", "protein_xref_refseq", "NP_387500" ], [ "Q2TGK3-1", "Intracellular localization and tissue-specific distribution of human and yeast DHHC cysteine-rich domain-containing proteins.", "Biochimica et biophysica acta", "2006 Apr", "Ohno Y, Kihara A, Sano T, Igarashi Y", "protein_xref_pubmed", "16647879", "protein_xref_refseq", "NP_001034103" ], [ "Q9EPT8-1", "The chloride intracellular channel protein CLIC5 is expressed at high levels in hair cell stereocilia and is essential for normal inner ear function.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2006 Oct 4", "Gagnon LH, Longo-Guess CM, Berryman M, Shin JB, Saylor KW, Yu H, Gillespie PG, Johnson KR", "protein_xref_pubmed", "17021174", "protein_xref_refseq", "NP_446055" ], [ "A0A8I6ALY8-1", "Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.", "Cell", "2003 Nov 26", "Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M", "protein_xref_pubmed", "14651853", "protein_xref_refseq", "NP_001094200" ], [ "Q03114-1", "Diabetes-Induced H3K9 Hyperacetylation Promotes Development of Alzheimer's Disease Through CDK5.", "Journal of Alzheimer's disease : JAD", "2020", "Cai HB, Fan ZZ, Tian T, Li ZC, Zhao CC, Guo WT, Ge ZM", "protein_xref_pubmed", "32310180", "protein_xref_refseq", "NP_543161" ], [ "D3ZEA7-1", "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.", "Briefings in bioinformatics", "2011 Sep", "Gaudet P, Livstone MS, Lewis SE, Thomas PD", "protein_xref_pubmed", "21873635", "protein_xref_refseq", "NP_001001285" ], [ "Q6DGF8-1", "Expression of new loci associated with obesity in diet-induced obese rats: from genetics to physiology.", "Obesity (Silver Spring, Md.)", "2012 Feb", "Gutierrez-Aguilar R, Kim DH, Woods SC, Seeley RJ", "protein_xref_pubmed", "21779089", "protein_xref_refseq", "NP_001007749" ], [ "Q06000-1", "Effect of serum and C-apoproteins from very low density lipoproteins on human postheparin plasma hepatic lipase.", "FEBS letters", "1976 Jun 15", "Kinnunen PK, Ehnolm C", "protein_xref_pubmed", "182536", "protein_xref_refseq", "NP_036730" ], [ "P10067-1", "High level expression of rat gamma-D-crystallin in Escherichia coli.", "Biochimie", "1994", "Ooki K, Amuro N, Shimizu Y, Okazaki T", "protein_xref_pubmed", "7849105", "protein_xref_refseq", "NP_149086" ], [ "P23347-1", "Guanylin and functional coupling proteins in the hepatobiliary system of rat and guinea pig.", "Histochemistry and cell biology", "2012 May", "Schwabe K, Cetin Y", "protein_xref_pubmed", "22310983", "protein_xref_refseq", "NP_058744" ], [ "P62836-1", "miR-202 modulates the progression of neuropathic pain through targeting RAP1A.", "Journal of cellular biochemistry", "2019 Mar", "Fang B, Wei L, Dong K, Niu X, Sui X, Zhang H", "protein_xref_pubmed", "30520098", "protein_xref_refseq", "NP_001005765" ], [ "P30835-1", "Isoenzymes of phosphofructokinase in the rat. Demonstration of the three non-identical subunits by biochemical, immunochemical and kinetic studies.", "The Biochemical journal", "1985 Jul 15", "Vora S, Oskam R, Staal GE", "protein_xref_pubmed", "2931076", "protein_xref_refseq", "NP_037322" ], [ "Q5M888-1", "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.", "Proceedings of the National Academy of Sciences of the United States of America", "2002 Dec 24", "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA", "protein_xref_pubmed", "12477932", "protein_xref_refseq", "NP_001014032" ], [ "D3ZW55-1", "NUDT16 and ITPA play a dual protective role in maintaining chromosome stability and cell growth by eliminating dIDP/IDP and dITP/ITP from nucleotide pools in mammals.", "Nucleic acids research", "2010 May", "Abolhassani N, Iyama T, Tsuchimoto D, Sakumi K, Ohno M, Behmanesh M, Nakabeppu Y", "protein_xref_pubmed", "20081199", "protein_xref_refseq", "NP_001101244" ], [ "O35567-1", "E-cadherin interactome complexity and robustness resolved by quantitative proteomics.", "Science signaling", "2014 Dec 2", "Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S, Zaidel-Bar R", "protein_xref_pubmed", "25468996", "protein_xref_refseq", "NP_112276" ], [ "D4AE24-1", "Protein kinase Calpha is implicated in cholecystokinin-induced activation of 70-kd S6 kinase in AR42J cells.", "Pancreas", "2005 Jan", "Yutsudo Y, Kido Y, Okabayashi Y, Matsumoto M, Ogawa W, Ohba M, Kuroki T, Kasuga M", "protein_xref_pubmed", "15632699", "protein_xref_refseq", "NP_001010962" ], [ "P33535-1", "Complementary DNA cloning of a mu-opioid receptor from rat peritoneal macrophages.", "Biochemical and biophysical research communications", "1995 Apr 17", "Sedqi M, Roy S, Ramakrishnan S, Elde R, Loh HH", "protein_xref_pubmed", "7733926", "protein_xref_refseq", "NP_001033686" ], [ "Q5U2W9-1", "Renalase gene is a novel susceptibility gene for essential hypertension: a two-stage association study in northern Han Chinese population.", "Journal of molecular medicine (Berlin, Germany)", "2007 Aug", "Zhao Q, Fan Z, He J, Chen S, Li H, Zhang P, Wang L, Hu D, Huang J, Qiang B, Gu D", "protein_xref_pubmed", "17216203", "protein_xref_refseq", "NP_001014189" ], [ "P35284-1", "Rab12 Regulates Retrograde Transport of Mast Cell Secretory Granules by Interacting with the RILP-Dynein Complex.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Feb 1", "Efergan A, Azouz NP, Klein O, Noguchi K, Rothenberg ME, Fukuda M, Sagi-Eisenberg R", "protein_xref_pubmed", "26740112", "protein_xref_refseq", "NP_037149" ], [ "P27321-1", "Detection and expression of a cDNA clone that encodes a polypeptide containing two inhibitory domains of human calpastatin and its recognition by rheumatoid arthritis sera.", "The Journal of clinical investigation", "1995 Apr", "Despres N, Talbot G, Plouffe B, Boire G, Menard HA", "protein_xref_pubmed", "7706496", "protein_xref_refseq", "NP_001028887" ], [ "D4A9T5-1", "Identification of EFHD1 as a novel Ca(2+) sensor for mitoflash activation.", "Cell calcium", "2016 May", "Hou T, Jian C, Xu J, Huang AY, Xi J, Hu K, Wei L, Cheng H, Wang X", "protein_xref_pubmed", "26975899", "protein_xref_refseq", "NP_001102780" ], [ "Q63054-1", "The diabetes autoantigen ICA69 and its Caenorhabditis elegans homologue, ric-19, are conserved regulators of neuroendocrine secretion.", "Molecular biology of the cell", "2000 Oct", "Pilon M, Peng XR, Spence AM, Plasterk RH, Dosch HM", "protein_xref_pubmed", "11029035", "protein_xref_refseq", "NP_110471" ], [ "P47868-1", "Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.", "Cell", "2012 Jun 8", "Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW", "protein_xref_pubmed", "22658674", "protein_xref_refseq", "NP_446308" ], [ "Q9JI85-1", "Proteomics of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membranes from brefeldin A-treated HepG2 cells identifies ERGIC-32, a new cycling protein that interacts with human Erv46.", "The Journal of biological chemistry", "2004 Nov 5", "Breuza L, Halbeisen R, Jeno P, Otte S, Barlowe C, Hong W, Hauri HP", "protein_xref_pubmed", "15308636", "protein_xref_refseq", "NP_067695" ], [ "Q5BMD4-1", "Isolation of arterial-specific genes by subtractive hybridization reveals molecular heterogeneity among arterial endothelial cells.", "Developmental dynamics : an official publication of the American Association of Anatomists", "2005 Aug", "Shin D, Anderson DJ", "protein_xref_pubmed", "15977181", "protein_xref_refseq", "NP_001019505" ], [ "P09321-1", "Rat placental lactogen II gene: characterization of gene structure and placental-specific expression.", "Endocrinology", "1998 Mar", "Shah P, Sun Y, Szpirer C, Duckworth ML", "protein_xref_pubmed", "9492027", "protein_xref_refseq", "NP_036667" ], [ "Q499U4-1", "Mutations in GAS8, a Gene Encoding a Nexin-Dynein Regulatory Complex Subunit, Cause Primary Ciliary Dyskinesia with Axonemal Disorganization.", "Human mutation", "2016 Aug", "Jeanson L, Thomas L, Copin B, Coste A, Sermet-Gaudelus I, Dastot-Le Moal F, Duquesnoy P, Montantin G, Collot N, Tissier S, Papon JF, Clement A, Louis B, Escudier E, Amselem S, Legendre M", "protein_xref_pubmed", "27120127", "protein_xref_refseq", "NP_001034119" ], [ "A0A0G2K9U6-1", "p62 Targeting to the autophagosome formation site requires self-oligomerization but not LC3 binding.", "The Journal of cell biology", "2011 Jan 10", "Itakura E, Mizushima N", "protein_xref_pubmed", "21220506", "protein_xref_refseq", "NP_001102279" ], [ "G3V8Y8-1", "Huntingtin interacting protein 1 Is a clathrin coat binding protein required for differentiation of late spermatogenic progenitors.", "Molecular and cellular biology", "2001 Nov", "Rao DS, Chang JC, Kumar PD, Mizukami I, Smithson GM, Bradley SV, Parlow AF, Ross TS", "protein_xref_pubmed", "11604514", "protein_xref_refseq", "NP_001093945" ], [ "P25095-1", "Characterization of Type 1 Angiotensin II Receptor Activation Induced Dual-Specificity MAPK Phosphatase Gene Expression Changes in Rat Vascular Smooth Muscle Cells.", "Cells", "2021 Dec 15", "Gem JB, Kovacs KB, Szalai L, Szakadati G, Porkolab E, Szalai B, Turu G, Toth AD, Szekeres M, Hunyady L, Balla A", "protein_xref_pubmed", "34944046", "protein_xref_refseq", "NP_112247" ], [ "Q9WUQ1-1", "A multilevel screening strategy defines a molecular fingerprint of proregenerative olfactory ensheathing cells and identifies SCARB2, a protein that improves regenerative sprouting of injured sensory spinal axons.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2013 Jul 3", "Roet KC, Franssen EH, de Bree FM, Essing AH, Zijlstra SJ, Fagoe ND, Eggink HM, Eggers R, Smit AB, van Kesteren RE, Verhaagen J", "protein_xref_pubmed", "23825416", "protein_xref_refseq", "NP_077376" ], [ "Q68G30-1", "Kinesin light-chain KLC3 expression in testis is restricted to spermatids.", "Biology of reproduction", "2001 May", "Junco A, Bhullar B, Tarnasky HA, van der Hoorn FA", "protein_xref_pubmed", "11319135", "protein_xref_refseq", "NP_612529" ], [ "B3DMA5-1", "Accumulated HSV1-TK proteins interfere with spermatogenesis through a disruption of the integrity of Sertoli-germ cell junctions.", "The Journal of reproduction and development", "2012", "Cai LY, Kato T, Chen M, Wang H, Sekine E, Izumi S, Kato Y", "protein_xref_pubmed", "22785219", "protein_xref_refseq", "NP_001100783" ], [ "P62142-1", "AMP-activated protein kinase: also regulated by ADP?", "Trends in biochemical sciences", "2011 Sep", "Hardie DG, Carling D, Gamblin SJ", "protein_xref_pubmed", "21782450", "protein_xref_refseq", "NP_037197" ], [ "A0A8I6A829-1", "Defining the membrane proteome of NK cells.", "Journal of mass spectrometry : JMS", "2010 Jan", "Ghosh D, Lippert D, Krokhin O, Cortens JP, Wilkins JA", "protein_xref_pubmed", "19946888", "protein_xref_refseq", "NP_001032882" ], [ "Q6AYC4-1", "The actin-capping protein CapG localizes to microtubule-dependent organelles during the cell cycle.", "Biochemical and biophysical research communications", "2009 Feb 27", "Hubert T, Van Impe K, Vandekerckhove J, Gettemans J", "protein_xref_pubmed", "19166812", "protein_xref_refseq", "NP_001013104" ], [ "D3Z9H7-1", "Involvement of calcineurin/NFATc4 pathway in a single-prolonged stress-based rat model of post-traumatic stress disorder.", "Molecular biology reports", "2019 Dec", "Su Q, Liu M, Jiang M, Wang Y, Ma X, Li S, Xie J", "protein_xref_pubmed", "31486013", "protein_xref_refseq", "NP_001100734" ], [ "Q63584-1", "Elevation of neuronal expression of NAIP reduces ischemic damage in the rat hippocampus.", "Nature medicine", "1997 Sep", "Xu DG, Crocker SJ, Doucet JP, St-Jean M, Tamai K, Hakim AM, Ikeda JE, Liston P, Thompson CS, Korneluk RG, MacKenzie A, Robertson GS", "protein_xref_pubmed", "9288726", "protein_xref_refseq", "NP_445919" ], [ "Q4KLM4-1", "Translational homeostasis via the mRNA cap-binding protein, eIF4E.", "Molecular cell", "2012 Jun 29", "Yanagiya A, Suyama E, Adachi H, Svitkin YV, Aza-Blanc P, Imataka H, Mikami S, Martineau Y, Ronai ZA, Sonenberg N", "protein_xref_pubmed", "22578813", "protein_xref_refseq", "NP_001034095" ], [ "P70616-1", "Down-regulation of Zac1 gene expression in rat white adipose tissue by androgens.", "The Journal of steroid biochemistry and molecular biology", "2014 Mar", "Mirowska A, Sledzinski T, Smolenski RT, Swierczynski J", "protein_xref_pubmed", "24316431", "protein_xref_refseq", "NP_036892" ], [ "Q9ES67-1", "Ethanol increases the activity of rat excitatory amino acid transporter type 4 expressed in Xenopus oocytes: role of protein kinase C and phosphatidylinositol 3-kinase.", "Alcoholism, clinical and experimental research", "2008 Feb", "Park HY, Kim JH, Zuo Z, Do SH", "protein_xref_pubmed", "18226120", "protein_xref_refseq", "NP_076472" ], [ "O35179-1", "Endophilin A2 protects H2O2-induced apoptosis by blockade of Bax translocation in rat basilar artery smooth muscle cells.", "Journal of molecular and cellular cardiology", "2016 Mar", "Liu Y, Gao M, Ma MM, Tang YB, Zhou JG, Wang GL, Du YH, Guan YY", "protein_xref_pubmed", "26854628", "protein_xref_refseq", "NP_446387" ], [ "D3ZAL8-1", "LRRTM3 Regulates Excitatory Synapse Development through Alternative Splicing and Neurexin Binding.", "Cell reports", "2016 Feb 2", "Um JW, Choi TY, Kang H, Cho YS, Choii G, Uvarov P, Park D, Jeong D, Jeon S, Lee D, Kim H, Lee SH, Bae YC, Choi SY, Airaksinen MS, Ko J", "protein_xref_pubmed", "26776509", "protein_xref_refseq", "NP_001099857" ], [ "P29147-1", "Primary structure of rat liver D-beta-hydroxybutyrate dehydrogenase from cDNA and protein analyses: a short-chain alcohol dehydrogenase.", "Biochemistry", "1992 Apr 21", "Churchill P, Hempel J, Romovacek H, Zhang WW, Brennan M, Churchill S", "protein_xref_pubmed", "1567834", "protein_xref_refseq", "NP_446447" ], [ "P43219-1", "Expression of glucose-dependent insulinotropic polypeptide and its receptor in the rat major salivary glands.", "Acta histochemica", "2014 May", "Privatananupunt J, Watari I, Podyma-Inoue KA, Kubono M, Ono T", "protein_xref_pubmed", "24360021", "protein_xref_refseq", "NP_036846" ], [ "B0BN32-1", "Sororin, a substrate of the anaphase-promoting complex, is required for sister chromatid cohesion in vertebrates.", "Molecular cell", "2005 Apr 15", "Rankin S, Ayad NG, Kirschner MW", "protein_xref_pubmed", "15837422", "protein_xref_refseq", "NP_001108514" ], [ "O88302-1", "Normal hematopoiesis and inflammatory responses despite discrete signaling defects in Galpha15 knockout mice.", "Molecular and cellular biology", "2000 Feb", "Davignon I, Catalina MD, Smith D, Montgomery J, Swantek J, Croy J, Siegelman M, Wilkie TM", "protein_xref_pubmed", "10629036", "protein_xref_refseq", "NP_445994" ], [ "Q920H8-1", "Age-dependent expression of duodenal cytochrome b, divalent metal transporter 1, ferroportin 1, and hephaestin in the duodenum of rats.", "Journal of gastroenterology and hepatology", "2015 Mar", "Kong WN, Wu Q, Shen D, Zhao SE, Guo P, Duan XL, Chang YZ", "protein_xref_pubmed", "25318588", "protein_xref_refseq", "NP_579838" ], [ "Q68FT6-1", "Apical ammonia transport by the mouse inner medullary collecting duct cell (mIMCD-3).", "American journal of physiology. Renal physiology", "2005 Aug", "Handlogten ME, Hong SP, Westhoff CM, Weiner ID", "protein_xref_pubmed", "15798090", "protein_xref_refseq", "NP_898877" ], [ "Q9WVH8-1", "Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins.", "Cardiovascular research", "2016 Jun 1", "Barallobre-Barreiro J, Oklu R, Lynch M, Fava M, Baig F, Yin X, Barwari T, Potier DN, Albadawi H, Jahangiri M, Porter KE, Watkins MT, Misra S, Stoughton J, Mayr M", "protein_xref_pubmed", "27068509", "protein_xref_refseq", "NP_062026" ], [ "Q4KLI9-1", "The SCF-FBXW5 E3-ubiquitin ligase is regulated by PLK4 and targets HsSAS-6 to control centrosome duplication.", "Nature cell biology", "2011 Jul 3", "Puklowski A, Homsi Y, Keller D, May M, Chauhan S, Kossatz U, Grunwald V, Kubicka S, Pich A, Manns MP, Hoffmann I, Gonczy P, Malek NP", "protein_xref_pubmed", "21725316", "protein_xref_refseq", "NP_001020901" ], [ "D3ZFM1-1", "Metabotropic regulation of RhoA/Rho-associated kinase by L-type Ca2+ channels: new mechanism for depolarization-evoked mammalian arterial contraction.", "Circulation research", "2011 May 27", "Fernandez-Tenorio M, Porras-Gonzalez C, Castellano A, Del Valle-Rodriguez A, Lopez-Barneo J, Urena J", "protein_xref_pubmed", "21493898", "protein_xref_refseq", "NP_001099859" ], [ "P26453-1", "Inflammation suppression by dexamethasone via inhibition of CD147-mediated NF-kappaB pathway in collagen-induced arthritis rats.", "Molecular and cellular biochemistry", "2020 Oct", "Wang Q, Xu B, Fan K, Wu J, Wang T", "protein_xref_pubmed", "32594339", "protein_xref_refseq", "NP_001103352" ], [ "B2GV46-1", "Short-chain fatty acids stimulate leptin production in adipocytes through the G protein-coupled receptor GPR41.", "Proceedings of the National Academy of Sciences of the United States of America", "2004 Jan 27", "Xiong Y, Miyamoto N, Shibata K, Valasek MA, Motoike T, Kedzierski RM, Yanagisawa M", "protein_xref_pubmed", "14722361", "protein_xref_refseq", "NP_001102382" ], [ "Q6IG12-1", "Ductular reaction, cytokeratin 7 positivity, and gamma-glutamyl transferase in multistage hepatocarcinogenesis in rats.", "Protoplasma", "2017 Mar", "Moreira AJ, Rodrigues GR, Bona S, Fratta LX, Weber GR, Picada JN, Dos Santos JL, Cerski CT, Marroni CA, Marroni NP", "protein_xref_pubmed", "27525410", "protein_xref_refseq", "NP_001041335" ], [ "A0A8I6AUB7-1", "Developmental expression of Magmas in murine tissues and its co-expression with the GM-CSF receptor.", "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "2003 May", "Jubinsky PT, Short MK, Mutema G, Witte DP", "protein_xref_pubmed", "12704206", "protein_xref_refseq", "NP_001093606" ], [ "Q9JKT7-1", "The molecular receptive ranges of human TAS2R bitter taste receptors.", "Chemical senses", "2010 Feb", "Meyerhof W, Batram C, Kuhn C, Brockhoff A, Chudoba E, Bufe B, Appendino G, Behrens M", "protein_xref_pubmed", "20022913", "protein_xref_refseq", "NP_076487" ], [ "P18113-1", "Molecular modeling and molecular dynamics simulation studies on thyroid hormone receptor from Rattus norvegicus: role of conserved water molecules.", "Journal of molecular modeling", "2021 Apr 8", "Mukherjee S, Dasgupta S, Adhikari U, Panja SS", "protein_xref_pubmed", "33834296", "protein_xref_refseq", "NP_001257783" ], [ "Q9WU49-1", "CRHSP-24 phosphorylation is regulated by multiple signaling pathways in pancreatic acinar cells.", "American journal of physiology. Gastrointestinal and liver physiology", "2003 Oct", "Schafer C, Steffen H, Krzykowski KJ, Goke B, Groblewski GE", "protein_xref_pubmed", "12801884", "protein_xref_refseq", "NP_690003" ], [ "P10868-1", "Monoclinic guanidinoacetate methyltransferase and gadolinium ion-binding characteristics.", "Acta crystallographica. Section D, Biological crystallography", "2003 Sep", "Komoto J, Takata Y, Yamada T, Konishi K, Ogawa H, Gomi T, Fujioka M, Takusagawa F", "protein_xref_pubmed", "12925789", "protein_xref_refseq", "NP_036925" ], [ "P62836-1", "Phosphorylation of synaptic GTPase-activating protein (synGAP) by Ca2+/calmodulin-dependent protein kinase II (CaMKII) and cyclin-dependent kinase 5 (CDK5) alters the ratio of its GAP activity toward Ras and Rap GTPases.", "The Journal of biological chemistry", "2015 Feb 20", "Walkup WG 4th, Washburn L, Sweredoski MJ, Carlisle HJ, Graham RL, Hess S, Kennedy MB", "protein_xref_pubmed", "25533468", "protein_xref_refseq", "NP_001005765" ], [ "P09483-1", "Pathogenesis and pathophysiology of autosomal dominant sleep-related hypermotor epilepsy with S284L-mutant alpha4 subunit of nicotinic ACh receptor.", "British journal of pharmacology", "2020 May", "Fukuyama K, Fukuzawa M, Shiroyama T, Okada M", "protein_xref_pubmed", "31901135", "protein_xref_refseq", "NP_077330" ], [ "Q5PQP2-1", "EBAG9/RCAS1 expression and its prognostic significance in prostatic cancer.", "International journal of cancer", "2003 Sep 1", "Takahashi S, Urano T, Tsuchiya F, Fujimura T, Kitamura T, Ouchi Y, Muramatsu M, Inoue S", "protein_xref_pubmed", "12845666", "protein_xref_refseq", "NP_001009665" ], [ "B2DD29-1", "SAD-B kinase regulates pre-synaptic vesicular dynamics at hippocampal Schaffer collateral synapses and affects contextual fear memory.", "Journal of neurochemistry", "2016 Jan", "Watabe AM, Nagase M, Hagiwara A, Hida Y, Tsuji M, Ochiai T, Kato F, Ohtsuka T", "protein_xref_pubmed", "26444684", "protein_xref_refseq", "NP_001120809" ], [ "P70552-1", "Crystal structure of rat GTP cyclohydrolase I feedback regulatory protein, GFRP.", "Journal of molecular biology", "2001 Oct 5", "Bader G, Schiffmann S, Herrmann A, Fischer M, Gutlich M, Auerbach G, Ploom T, Bacher A, Huber R, Lemm T", "protein_xref_pubmed", "11580249", "protein_xref_refseq", "NP_598279" ], [ "M0R756-1", 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"protein_xref_refseq", "NP_620249" ], [ "G3V9T7-1", "Tail-anchored Protein Insertion in Mammals: FUNCTION AND RECIPROCAL INTERACTIONS OF THE TWO SUBUNITS OF THE TRC40 RECEPTOR.", "The Journal of biological chemistry", "2016 Jul 15", "Colombo SF, Cardani S, Maroli A, Vitiello A, Soffientini P, Crespi A, Bram RF, Benfante R, Borgese N", "protein_xref_pubmed", "27226539", "protein_xref_refseq", "NP_001093975" ], [ "Q80X08-1", "WASH and WAVE actin regulators of the Wiskott-Aldrich syndrome protein (WASP) family are controlled by analogous structurally related complexes.", "Proceedings of the National Academy of Sciences of the United States of America", "2010 Jun 8", "Jia D, Gomez TS, Metlagel Z, Umetani J, Otwinowski Z, Rosen MK, Billadeau DD", "protein_xref_pubmed", "20498093", "protein_xref_refseq", "NP_954677" ], [ "P97609-1", "The thyroid hormone-regulated corepressor hairless associates with histone deacetylases in neonatal rat brain.", "Molecular endocrinology (Baltimore, Md.)", 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"Seeger TS, Frank D, Rohr C, Will R, Just S, Grund C, Lyon R, Luedde M, Koegl M, Sheikh F, Rottbauer W, Franke WW, Katus HA, Olson EN, Frey N", "protein_xref_pubmed", "20093627", "protein_xref_refseq", "NP_001014233" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - v-x.x.x\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2020-04-10T12:05:22.894637\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/compiled/rat_protein_blacklisted_pmids_uniprotkb.csv\n Name: rat_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_function_refseq.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12593\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"37399\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1940\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7504\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"37202\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"37402\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"12777\"", "downloadurl": "/ln2data/releases/data/v-2.0.2/reviewed/rat_protein_citations_refseq.csv" }