{ "bcoid": "GLY_000261", "title": "Rat UniProtKB Xref PANTHER", "description": "The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJZ1-1...", "protein_xref..." ], [ "P32301-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q5RJZ1-1", "protein_xref_panther", "PTHR11472", "PTHR11472" ], [ "P32301-1", "protein_xref_panther", "PTHR45620:SF25", "PTHR45620:SF25" ], [ "A0A8I5ZR95-1", "protein_xref_panther", "PTHR10972", "PTHR10972" ], [ "A0A8I6B3C5-1", "protein_xref_panther", "PTHR12943", "PTHR12943" ], [ "A0A8I5Y4X4-1", "protein_xref_panther", "PTHR12948", "PTHR12948" ], [ "O35152-1", "protein_xref_panther", "PTHR12791", "PTHR12791" ], [ "O35158-1", "protein_xref_panther", "PTHR44170:SF1", "PTHR44170:SF1" ], [ "F7FI04-1", "protein_xref_panther", "PTHR46209", "PTHR46209" ], [ "P02761-1", "protein_xref_panther", "PTHR11430", "PTHR11430" ], [ "P02767-1", "protein_xref_panther", "PTHR10395", "PTHR10395" ], [ "P02767-1", "protein_xref_panther", "PTHR10395:SF12", "PTHR10395:SF12" ], [ "D4A4W8-1", "protein_xref_panther", "PTHR11267", "PTHR11267" ], [ "F7EN52-1", "protein_xref_panther", "PTHR24293", "PTHR24293" ], [ "D4A4W5-1", "protein_xref_panther", "PTHR24092:SF79", "PTHR24092:SF79" ], [ "D4A4W7-1", "protein_xref_panther", "PTHR22910", "PTHR22910" ], [ "P07727-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "D4A6Q6-1", "protein_xref_panther", "PTHR45685:SF2", "PTHR45685:SF2" ], [ "P01237-1", "protein_xref_panther", "PTHR11417", "PTHR11417" ], [ "P01230-1", "protein_xref_panther", "PTHR11515", "PTHR11515" ], [ "P09005-1", "protein_xref_panther", "PTHR11461", "PTHR11461" ], [ "P09006-1", "protein_xref_panther", "PTHR11461", "PTHR11461" ], [ "A0A8I5ZLJ0-1", "protein_xref_panther", "PTHR16238", "PTHR16238" ], [ "Q9JHY1-1", "protein_xref_panther", "PTHR45113", "PTHR45113" ], [ "Q9JHY2-1", "protein_xref_panther", "PTHR11153", "PTHR11153" ], [ "P31646-1", "protein_xref_panther", "PTHR11616", "PTHR11616" ], [ "D3ZKN4-1", "protein_xref_panther", "PTHR23330:SF6", "PTHR23330:SF6" ], [ "A0A8I6GIM3-1", "protein_xref_panther", "PTHR43146", "PTHR43146" ], [ "P18508-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "P04757-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "A0A8I5Y6V0-1", "protein_xref_panther", "PTHR12233", "PTHR12233" ], [ "A0A8I5Y6V4-1", "protein_xref_panther", "PTHR22666", "PTHR22666" ], [ "P47709-1", "protein_xref_panther", "PTHR45729:SF3", "PTHR45729:SF3" ], [ "P47709-1", "protein_xref_panther", "PTHR45729", "PTHR45729" ], [ "A0A8I6AER7-1", "protein_xref_panther", "PTHR45113", "PTHR45113" ], [ "A0A8I6A2H9-1", "protein_xref_panther", "PTHR13759", "PTHR13759" ], [ "Q5XIT6-1", "protein_xref_panther", "PTHR12378", "PTHR12378" ], [ "A0A8I6A0U5-1", "protein_xref_panther", "PTHR10857", "PTHR10857" ], [ "A0A8I6AVR1-1", "protein_xref_panther", "PTHR46315", "PTHR46315" ], [ "Q6P6V6-1", "protein_xref_panther", "PTHR21229", "PTHR21229" ], [ "A0A8I5ZL58-1", "protein_xref_panther", "PTHR47503", "PTHR47503" ], [ "Q9R1N3-1", "protein_xref_panther", "PTHR11453", "PTHR11453" ], [ "D3ZIY3-1", "protein_xref_panther", "PTHR12357", "PTHR12357" ], [ "D3ZIY7-1", "protein_xref_panther", "PTHR13718", "PTHR13718" ], [ "Q62952-1", "protein_xref_panther", "PTHR11647:SF57", "PTHR11647:SF57" ], [ "D3ZSP1-1", "protein_xref_panther", "PTHR11193", "PTHR11193" ], [ "A0A8I6AUS4-1", "protein_xref_panther", "PTHR36465", "PTHR36465" ], [ "D3ZFP4-1", "protein_xref_panther", "PTHR11630", "PTHR11630" ], [ "D3ZFP7-1", "protein_xref_panther", "PTHR21386", "PTHR21386" ], [ "D3ZFP6-1", "protein_xref_panther", "PTHR21556", "PTHR21556" ], [ "D3ZFP1-1", "protein_xref_panther", "PTHR15146", "PTHR15146" ], [ "D4A131-1", "protein_xref_panther", "PTHR10746", "PTHR10746" ], [ "D4A133-1", "protein_xref_panther", "PTHR43607", "PTHR43607" ], [ "D4A138-1", "protein_xref_panther", "PTHR12887", "PTHR12887" ], [ "A0A8I5Y5E8-1", "protein_xref_panther", "PTHR22629", "PTHR22629" ], [ "Q6AYC4-1", "protein_xref_panther", "PTHR11977:SF29", "PTHR11977:SF29" ], [ "Q6AYC4-1", "protein_xref_panther", "PTHR11977", "PTHR11977" ], [ "Q5PQK4-1", "protein_xref_panther", "PTHR15932", "PTHR15932" ], [ "A0A8I5ZPP3-1", "protein_xref_panther", "PTHR23226:SF210", "PTHR23226:SF210" ], [ "G3V723-1", "protein_xref_panther", "PTHR11733", "PTHR11733" ], [ "Q7TP54-1", "protein_xref_panther", "PTHR15829", "PTHR15829" ], [ "Q7TP54-1", "protein_xref_panther", "PTHR15829:SF2", "PTHR15829:SF2" ], [ "A0A8I6GFU3-1", "protein_xref_panther", "PTHR11977", "PTHR11977" ], [ "A0A8I6GFU3-1", "protein_xref_panther", "PTHR11977:SF86", "PTHR11977:SF86" ], [ "D3ZCS5-1", "protein_xref_panther", "PTHR21077", "PTHR21077" ], [ "D3ZCS6-1", "protein_xref_panther", "PTHR21522", "PTHR21522" ], [ "D3ZCS1-1", "protein_xref_panther", "PTHR10845:SF32", "PTHR10845:SF32" ], [ "D3ZCS3-1", "protein_xref_panther", "PTHR10288:SF166", "PTHR10288:SF166" ], [ "D3ZCS9-1", "protein_xref_panther", "PTHR10395", "PTHR10395" ], [ "A0A0G2KAH3-1", "protein_xref_panther", "PTHR11267", "PTHR11267" ], [ "D3ZUF1-1", "protein_xref_panther", "PTHR31171", "PTHR31171" ], [ "Q9JIL3-1", "protein_xref_panther", "PTHR45762:SF4", "PTHR45762:SF4" ], [ "D3ZXJ0-1", "protein_xref_panther", "PTHR10201:SF21", "PTHR10201:SF21" ], [ "P14669-1", "protein_xref_panther", "PTHR10502:SF25", "PTHR10502:SF25" ], [ "P63088-1", "protein_xref_panther", "PTHR11668:SF204", "PTHR11668:SF204" ], [ "Q99ND9-1", "protein_xref_panther", "PTHR12292", "PTHR12292" ], [ "F7FCX9-1", "protein_xref_panther", "PTHR12709", "PTHR12709" ], [ "Q01956-1", "protein_xref_panther", "PTHR11537", "PTHR11537" ], [ "A0A0G2JVZ2-1", "protein_xref_panther", "PTHR45921", "PTHR45921" ], [ "A0A8I6AJY5-1", "protein_xref_panther", "PTHR11006", "PTHR11006" ], [ "A0A8I6A180-1", "protein_xref_panther", "PTHR11219:SF65", "PTHR11219:SF65" ], [ "D4A2P1-1", "protein_xref_panther", "PTHR14304", "PTHR14304" ], [ "A0A8I6A182-1", "protein_xref_panther", "PTHR10658", "PTHR10658" ], [ "Q9R0J8-1", "protein_xref_panther", "PTHR12000", "PTHR12000" ], [ "A0A0G2JZZ8-1", "protein_xref_panther", "PTHR12706", "PTHR12706" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PANTHER\n\nVersion\n - v-x.x.x\n\nCreated on\n - 2019-09-06T14:06:38.988053\n\nModified on\n - 2022-01-19T13:43:59.401573\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2022_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_panther.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_xref_panther.csv\n Name: rat_protein_xref_panther.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.2/reviewed/rat_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11367\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7207\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"7207\"", "downloadurl": "/ln2data/releases/data/v-2.0.2/reviewed/rat_protein_xref_panther.csv" }