{ "bcoid": "GLY_000666", "title": "Fruitfly UniProtKB Xref OMA", "description": "The Fruitfly UniProtKB Xref OMA contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "M9PJ12-1...", "protein_xref..." ], [ "P40796-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "M9PJ12-1", "protein_xref_oma", "YDYYSTT", "" ], [ "P40796-1", "protein_xref_oma", "PEHNEER", "" ], [ "P40797-1", "protein_xref_oma", "HTNNFLY", "" ], [ "P40794-1", "protein_xref_oma", "HAMMEDL", "" ], [ "P40795-1", "protein_xref_oma", "NLMTNTI", "" ], [ "P40792-1", "protein_xref_oma", "KPGRKCT", "" ], [ "P40793-1", "protein_xref_oma", "ITHHQQK", "" ], [ "P40791-1", "protein_xref_oma", "RITEGWA", "" ], [ "P40421-1", "protein_xref_oma", "ANKATHM", "" ], [ "P40423-1", "protein_xref_oma", "FLTMMGE", "" ], [ "P40427-1", "protein_xref_oma", "RMIAIIT", "" ], [ "A2VEV2-1", "protein_xref_oma", "YMSRFHA", "" ], [ "A2VEV0-1", "protein_xref_oma", "QVAKCEM", "" ], [ "P08841-1", "protein_xref_oma", "EMEGECV", "" ], [ "Q9VE87-1", "protein_xref_oma", "QMSEMIM", "" ], [ "Q9VE85-1", "protein_xref_oma", "FRHHQNN", "" ], [ "P05389-1", "protein_xref_oma", "AYLMNVL", "" ], [ "A0A6H2EE55-1", "protein_xref_oma", "YLRTYNA", "" ], [ "Q9VK71-1", "protein_xref_oma", "APNGRHC", "" ], [ "Q9V776-1", "protein_xref_oma", "HKHGYLM", "" ], [ "Q9VRR2-1", "protein_xref_oma", "EMGHVKK", "" ], [ "Q9VRR3-1", "protein_xref_oma", "NDNDIWI", "" ], [ "Q9VRR0-1", "protein_xref_oma", "LMILIWM", "" ], [ "M9PEG2-1", "protein_xref_oma", "LFCSMLM", "" ], [ "M9PEA4-1", "protein_xref_oma", "LLECPWY", "" ], [ "P04388-1", "protein_xref_oma", "QCVIDDI", "" ], [ "A1ZB47-1", "protein_xref_oma", "HRAKQMS", "" ], [ "A1ZB42-1", "protein_xref_oma", "ESQDCNH", "" ], [ "A1ZB48-1", "protein_xref_oma", "TYLPWAT", "" ], [ "A1ZB49-1", "protein_xref_oma", "KRRLPWQ", "" ], [ "Q9VYT1-1", "protein_xref_oma", "RMQTHLN", "" ], [ "Q9VLI9-1", "protein_xref_oma", "GQRDGIN", "" ], [ "Q9VLI1-1", "protein_xref_oma", "NLSMEMI", "" ], [ "Q9VLI0-1", "protein_xref_oma", "HCNDDPI", "" ], [ "Q9VLI3-1", "protein_xref_oma", "SHVLITY", "" ], [ "Q9VLI2-1", "protein_xref_oma", "GLEMVWD", "" ], [ "Q9VLI4-1", "protein_xref_oma", "PIMMDKE", "" ], [ "Q9VLI6-1", "protein_xref_oma", "WPQKQFP", "" ], [ "Q95RA8-1", "protein_xref_oma", "QECPIMS", "" ], [ "A0A0B4KHI4-1", "protein_xref_oma", "MLIAFEQ", "" ], [ "Q02870-1", "protein_xref_oma", "YFVESTH", "" ], [ "Q7JUM3-1", "protein_xref_oma", "LGPIRHE", "" ], [ "Q8SXV2-1", "protein_xref_oma", "CDSENYC", "" ], [ "Q8SXV4-1", "protein_xref_oma", "IMIMSAV", "" ], [ "Q95R34-1", "protein_xref_oma", "EFVPREM", "" ], [ "Q8SXV9-1", "protein_xref_oma", "WNNGWSS", "" ], [ "Q95R35-1", "protein_xref_oma", "CEPPVLM", "" ], [ "Q9VME8-1", "protein_xref_oma", "ECQQRYL", "" ], [ "Q9VME9-1", "protein_xref_oma", "PGQYRSC", "" ], [ "Q9VME0-1", "protein_xref_oma", "QCPQFLD", "" ], [ "Q9VME1-1", "protein_xref_oma", "NMIKAKC", "" ], [ "Q9VME2-1", "protein_xref_oma", "YIMTRFV", "" ], [ "Q9VME3-1", "protein_xref_oma", "REMQLGY", "" ], [ "Q9VVS1-1", "protein_xref_oma", "HFGICSL", "" ], [ "Q9VME5-1", "protein_xref_oma", "GDMAAKH", "" ], [ "Q9VVS3-1", "protein_xref_oma", "EPYSHHW", "" ], [ "Q9VVS2-1", "protein_xref_oma", "GICFETI", "" ], [ "A1ZAX1-1", "protein_xref_oma", "VVMHRSE", "" ], [ "P17336-1", "protein_xref_oma", "FNYVQIH", "" ], [ "P56079-1", "protein_xref_oma", "NFAWTHM", "" ], [ "Q9I7P2-1", "protein_xref_oma", "NCCPGGR", "" ], [ "Q9W0I6-1", "protein_xref_oma", "WAEVNTL", "" ], [ "Q7KN74-1", "protein_xref_oma", "PRNEYEE", "" ], [ "Q7KN75-1", "protein_xref_oma", "ARSDIMN", "" ], [ "Q9VWS8-1", "protein_xref_oma", "YCAYMID", "" ], [ "Q9VWS9-1", "protein_xref_oma", "CKELHPR", "" ], [ "Q9VWS4-1", "protein_xref_oma", "TSCQGEM", "" ], [ "Q9VWS5-1", "protein_xref_oma", "REQHELM", "" ], [ "P16241-1", "protein_xref_oma", "TMTSQVM", "" ], [ "Q9VWS7-1", "protein_xref_oma", "QILVEGM", "" ], [ "Q9VWS0-1", "protein_xref_oma", "VEQTNEG", "" ], [ "Q9VWS1-1", "protein_xref_oma", "LTMEGYP", "" ], [ "Q9VWS2-1", "protein_xref_oma", "FWVTIFG", "" ], [ "Q9VHV8-1", "protein_xref_oma", "NHKDYPN", "" ], [ "Q8SYY6-1", "protein_xref_oma", "TSQWLIG", "" ], [ "Q9VZ85-1", "protein_xref_oma", "ESFDYGN", "" ], [ "P48554-1", "protein_xref_oma", "WLPEITH", "" ], [ "Q9VBR7-1", "protein_xref_oma", "KPPLMEY", "" ], [ "Q9VWX9-1", "protein_xref_oma", "LQWNQWH", "" ], [ "Q9W277-1", "protein_xref_oma", "HLWWATP", "" ], [ "Q9V969-1", "protein_xref_oma", "FYCDRTI", "" ], [ "Q9VUR2-1", "protein_xref_oma", "RESKWAK", "" ], [ "P21663-1", "protein_xref_oma", "VETALHN", "" ], [ "B7Z153-1", "protein_xref_oma", "NEDEHCH", "" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref OMA\n\nVersion\n - v-x.x.x\n\nCreated on\n - 2022-08-31T13:20:12.938783\n\nModified on\n - 2022-08-31T13:20:34.190651\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref OMA contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_oma.csv\n Name: fruitfly_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13302\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13294\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_oma.csv" }