{ "bcoid": "GLY_000660", "title": "Fruitfly UniProtKB Xref CDD", "description": "The Fruitfly UniProtKB Xref CDD contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "Cdd cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P34082-1...", "protein_xref..." ], [ "P40797-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P34082-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "P40797-1", "protein_xref_cdd", "cd01850", "CDC_Septin" ], [ "P40793-1", "protein_xref_cdd", "cd01874", "Cdc42" ], [ "P40791-1", "protein_xref_cdd", "cd00265", "MADS_MEF2_like" ], [ "P40798-1", "protein_xref_cdd", "cd02643", "R3H_NF-X1" ], [ "P40421-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "P40423-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "P40427-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "A2VEV2-1", "protein_xref_cdd", "cd00060", "FHA" ], [ "P05389-1", "protein_xref_cdd", "cd05833", "Ribosomal_P2" ], [ "Q9VK71-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9VRR3-1", "protein_xref_cdd", "cd00170", "SEC14" ], [ "A1ZB47-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "Q7JUM3-1", "protein_xref_cdd", "cd03796", "GT4_PIG-A-like" ], [ "Q95R34-1", "protein_xref_cdd", "cd00170", "SEC14" ], [ "Q95R35-1", "protein_xref_cdd", "cd00433", "Peptidase_M17" ], [ "Q9VME2-1", "protein_xref_cdd", "cd08662", "M13" ], [ "Q9VME3-1", "protein_xref_cdd", "cd08662", "M13" ], [ "P17336-1", "protein_xref_cdd", "cd08156", "catalase_clade_3" ], [ "A8JQT5-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "A8JQT5-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "A8JQT5-1", "protein_xref_cdd", "cd13193", "FERM_C_FARP1-like" ], [ "Q9VWS8-1", "protein_xref_cdd", "cd04508", "TUDOR" ], [ "P16241-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9VWS0-1", "protein_xref_cdd", "cd15585", "PHD_ING3" ], [ "G4LU05-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "G4LU05-1", "protein_xref_cdd", "cd00112", "LDLa" ], [ "Q9VZ85-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q9Y137-1", "protein_xref_cdd", "cd07993", "LPLAT_DHAPAT-like" ], [ "A0A0B4JDC9-1", "protein_xref_cdd", "cd12012", "SH3_RIM-BP_2" ], [ "A0A0B4JDC9-1", "protein_xref_cdd", "cd12013", "SH3_RIM-BP_3" ], [ "A0A0B4JDC9-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "Q9VFD3-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "Q9VFD3-1", "protein_xref_cdd", "cd00201", "WW" ], [ "A1ZAI5-1", "protein_xref_cdd", "cd09071", "FAR_C" ], [ "A1ZAI3-1", "protein_xref_cdd", "cd09071", "FAR_C" ], [ "P32870-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "P27619-1", "protein_xref_cdd", "cd08771", "DLP_1" ], [ "Q01583-4", "protein_xref_cdd", "cd00051", "EFh" ], [ "Q01583-4", "protein_xref_cdd", "cd00029", "C1" ], [ "Q9VN82-1", "protein_xref_cdd", "cd00060", "FHA" ], [ "Q9VN82-1", "protein_xref_cdd", "cd15471", "Myo5p-like_CBD_afadin" ], [ "Q9VN82-1", "protein_xref_cdd", "cd00060", "FHA" ], [ "Q9VN82-1", "protein_xref_cdd", "cd15471", "Myo5p-like_CBD_afadin" ], [ "A1Z9R1-1", "protein_xref_cdd", "cd12289", "RRM_LARP6" ], [ "P13678-1", "protein_xref_cdd", "cd05591", "STKc_nPKC_epsilon" ], [ "P13678-1", "protein_xref_cdd", "cd00029", "C1" ], [ "Q9VS54-1", "protein_xref_cdd", "cd00685", "Trans_IPPS_HT" ], [ "P32870-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "Q24173-1", "protein_xref_cdd", "cd02895", "GGTase-I" ], [ "Q7JQ32-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "Q9VFW9-1", "protein_xref_cdd", "cd09601", "M1_APN-Q_like" ], [ "B7YZL3-1", "protein_xref_cdd", "cd00029", "C1" ], [ "Q9W1G0-1", "protein_xref_cdd", "cd00957", "Transaldolase_TalAB" ], [ "Q9VY45-1", "protein_xref_cdd", "cd02801", "DUS_like_FMN" ], [ "Q9VY45-1", "protein_xref_cdd", "cd19871", "DSRM_DUS2L" ], [ "Q9VY44-1", "protein_xref_cdd", "cd07895", "Adenylation_mRNA_capping" ], [ "Q9W4Y3-1", "protein_xref_cdd", "cd00112", "LDLa" ], [ "Q9VY48-1", "protein_xref_cdd", "cd00866", "PEBP_euk" ], [ "Q9VCT4-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "P06602-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P06601-1", "protein_xref_cdd", "cd00131", "PAX" ], [ "P06601-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9VWN3-1", "protein_xref_cdd", "cd00207", "fer2" ], [ "P25823-1", "protein_xref_cdd", "cd04508", "TUDOR" ], [ "P25822-1", "protein_xref_cdd", "cd07920", "Pumilio" ], [ "P00522-1", "protein_xref_cdd", "cd09935", "SH2_ABL" ], [ "Q4V4U2-1", "protein_xref_cdd", "cd00087", "FReD" ], [ "A1Z813-1", "protein_xref_cdd", "cd01479", "Sec24-like" ], [ "Q8SZ60-1", "protein_xref_cdd", "cd00190", "Tryp_SPc" ], [ "Q9VU36-1", "protein_xref_cdd", "cd07026", "Ribosomal_L20" ], [ "Q9VU34-1", "protein_xref_cdd", "cd00014", "CH" ], [ "Q9VU35-1", "protein_xref_cdd", "cd00320", "cpn10" ], [ "Q9VSW1-1", "protein_xref_cdd", "cd00897", "UGPase_euk" ], [ "Q8T8U1-1", "protein_xref_cdd", "cd03758", "proteasome_beta_type_2" ], [ "Q5LJP9-1", "protein_xref_cdd", "cd01991", "Asn_Synthase_B_C" ], [ "Q86PD3-1", "protein_xref_cdd", "cd07724", "POD-like_MBL-fold" ], [ "P13607-1", "protein_xref_cdd", "cd02608", "P-type_ATPase_Na-K_like" ], [ "P83097-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "Q9VJ37-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9VF26-1", "protein_xref_cdd", "cd04508", "TUDOR" ], [ "Q9I7J0-1", "protein_xref_cdd", "cd00014", "CH" ], [ "Q961C8-1", "protein_xref_cdd", "cd00118", "LysM" ], [ "P49846-1", "protein_xref_cdd", "cd08044", "TAF5_NTD2" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref CDD\n\nVersion\n - v-x.x.x\n\nCreated on\n - 2022-08-31T12:47:56.887721\n\nModified on\n - 2022-01-31T17:05:17.742224\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref CDD contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_cdd.csv\n Name: fruitfly_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2395\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1071\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1071\"", "downloadurl": "/ln2data/releases/data/v-2.0.1/reviewed/fruitfly_protein_xref_cdd.csv" }