{
    "bcoid": "GLY_000393",
    "title": "Mouse Protein Names (NCBI RefSeq)",
    "description": "The Mouse Protein Names (NCBI RefSeq) dataset contains mouse [taxid:10090] protein names (primary and ...",
    "filename": "mouse_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Protein",
        "tags": "Protein Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q8BH24-1...",
                "NP_598608.2..."
            ],
            [
                "Q8BH24-1...",
                "NP_598608.2..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "Q8BH24-1",
                "NP_598608.2",
                "transmembrane 9 superfamily member 4 precursor"
            ],
            [
                "Q8BH24-1",
                "NP_598608.2",
                "transmembrane 9 superfamily protein member 4"
            ],
            [
                "Q8BH24-1",
                "NP_598608",
                "transmembrane 9 superfamily member 4 precursor"
            ],
            [
                "Q8BH24-1",
                "NP_598608",
                "transmembrane 9 superfamily protein member 4"
            ],
            [
                "Q8BH27-1",
                "NP_766282.1",
                "multiple epidermal growth factor-like domains protein 9 precursor"
            ],
            [
                "Q8BH27-1",
                "NP_766282.1",
                "EGF-like-domain, multiple 5; EGF-like protein 5; multiple EGF-like domains protein 9; epidermal growth factor-like protein 5; multiple epidermal growth factor-like domains protein 9"
            ],
            [
                "Q8BH27-1",
                "NP_766282",
                "multiple epidermal growth factor-like domains protein 9 precursor"
            ],
            [
                "Q8BH27-1",
                "NP_766282",
                "EGF-like-domain, multiple 5; EGF-like protein 5; multiple EGF-like domains protein 9; epidermal growth factor-like protein 5; multiple epidermal growth factor-like domains protein 9"
            ],
            [
                "Q8BH26-1",
                "NP_001311444.1",
                "transmembrane protein 251 isoform 2"
            ],
            [
                "Q8BH26-1",
                "NP_001311444.1",
                "UPF0694 transmembrane protein C14orf109 homolog"
            ],
            [
                "Q8BH26-1",
                "NP_001311444",
                "transmembrane protein 251 isoform 2"
            ],
            [
                "Q8BH26-1",
                "NP_001311444",
                "UPF0694 transmembrane protein C14orf109 homolog"
            ],
            [
                "Q80T32-1",
                "NP_001334415.1",
                "adhesion G-protein coupled receptor D1 isoform 2 precursor"
            ],
            [
                "Q80T32-1",
                "NP_001334415.1",
                "G-protein coupled receptor PGR25; probable G-protein coupled receptor 133; G protein coupled receptor Gpr133"
            ],
            [
                "Q80T32-1",
                "NP_001334415",
                "adhesion G-protein coupled receptor D1 isoform 2 precursor"
            ],
            [
                "Q80T32-1",
                "NP_001334415",
                "G-protein coupled receptor PGR25; probable G-protein coupled receptor 133; G protein coupled receptor Gpr133"
            ],
            [
                "B2RXV4-1",
                "NP_001074728.1",
                "feline leukemia virus subgroup C receptor-related protein 1 isoform 1"
            ],
            [
                "B2RXV4-1",
                "NP_001074728.1",
                "major facilitator superfamily domain containing 7B; feline leukemia virus subgroup C receptor-related protein 1"
            ],
            [
                "B2RXV4-1",
                "NP_001074728",
                "feline leukemia virus subgroup C receptor-related protein 1 isoform 1"
            ],
            [
                "B2RXV4-1",
                "NP_001074728",
                "major facilitator superfamily domain containing 7B; feline leukemia virus subgroup C receptor-related protein 1"
            ],
            [
                "E9Q3P4-1",
                "NP_001074832.2",
                "centromere protein F"
            ],
            [
                "E9Q3P4-1",
                "NP_001074832.2",
                "leucine, glutamic acid, lysine family 1 protein; centromere autoantigen F"
            ],
            [
                "E9Q3P4-1",
                "NP_001074832",
                "centromere protein F"
            ],
            [
                "E9Q3P4-1",
                "NP_001074832",
                "leucine, glutamic acid, lysine family 1 protein; centromere autoantigen F"
            ],
            [
                "A5H0M4-1",
                "NP_081894.1",
                "POTE ankyrin domain family member A isoform 2"
            ],
            [
                "A5H0M4-1",
                "NP_081894.1",
                "gonad specific ankyrin repeat protein"
            ],
            [
                "A5H0M4-1",
                "NP_081894",
                "POTE ankyrin domain family member A isoform 2"
            ],
            [
                "A5H0M4-1",
                "NP_081894",
                "gonad specific ankyrin repeat protein"
            ],
            [
                "P03899-1",
                "NP_904335.1",
                "NADH dehydrogenase subunit 3"
            ],
            [
                "P03899-1",
                "NP_904335",
                "NADH dehydrogenase subunit 3"
            ],
            [
                "O35153-1",
                "NP_061212.3",
                "BET1-like protein"
            ],
            [
                "O35153-1",
                "NP_061212.3",
                "GOS-15; soluble N-ethylmaleimide-sensitive factor attachment protein (SNARE) 15; golgi SNARE, 15 kD; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; blocked early in transport 1 homolog-like"
            ],
            [
                "O35153-1",
                "NP_061212",
                "BET1-like protein"
            ],
            [
                "O35153-1",
                "NP_061212",
                "GOS-15; soluble N-ethylmaleimide-sensitive factor attachment protein (SNARE) 15; golgi SNARE, 15 kD; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; blocked early in transport 1 homolog-like"
            ],
            [
                "P03893-1",
                "NP_904329.1",
                "NADH dehydrogenase subunit 2"
            ],
            [
                "P03893-1",
                "NP_904329",
                "NADH dehydrogenase subunit 2"
            ],
            [
                "Q9QYH9-1",
                "NP_062291.1",
                "tumor necrosis factor ligand superfamily member 14"
            ],
            [
                "Q9QYH9-1",
                "NP_062291.1",
                "tumor necrosis factor ligand 1d"
            ],
            [
                "Q9QYH9-1",
                "NP_062291",
                "tumor necrosis factor ligand superfamily member 14"
            ],
            [
                "Q9QYH9-1",
                "NP_062291",
                "tumor necrosis factor ligand 1d"
            ],
            [
                "P52479-1",
                "NP_001297559.1",
                "ubiquitin carboxyl-terminal hydrolase 10 isoform 2"
            ],
            [
                "P52479-1",
                "NP_001297559.1",
                "ubiquintin c-terminal hydrolase related polypeptide; ubiquitin specific protease 10; ubiquitin carboxyl-terminal hydrolase 10; ubiquitin thioesterase 10; deubiquitinating enzyme 10; ubiquitin-specific-processing protease 10; ubiquitin thiolesterase 10"
            ],
            [
                "P52479-1",
                "NP_001297559",
                "ubiquitin carboxyl-terminal hydrolase 10 isoform 2"
            ],
            [
                "P52479-1",
                "NP_001297559",
                "ubiquintin c-terminal hydrolase related polypeptide; ubiquitin specific protease 10; ubiquitin carboxyl-terminal hydrolase 10; ubiquitin thioesterase 10; deubiquitinating enzyme 10; ubiquitin-specific-processing protease 10; ubiquitin thiolesterase 10"
            ],
            [
                "P02762-1",
                "NP_001128599.1",
                "major urinary protein 11 precursor"
            ],
            [
                "P02762-1",
                "NP_001128599.1",
                "MUP 6; major urinary protein 17; major urinary protein 14; MUP11 and MUP8; Major urinary proteins 11 and 8; major urinary protein 11; Major urinary protein 6; Alpha-2U-globulin; Group 1, BS6"
            ],
            [
                "P02762-1",
                "NP_001128599",
                "major urinary protein 11 precursor"
            ],
            [
                "P02762-1",
                "NP_001128599",
                "MUP 6; major urinary protein 17; major urinary protein 14; MUP11 and MUP8; Major urinary proteins 11 and 8; major urinary protein 11; Major urinary protein 6; Alpha-2U-globulin; Group 1, BS6"
            ],
            [
                "Q9QYH6-1",
                "NP_062765.1",
                "melanoma-associated antigen D1"
            ],
            [
                "Q9QYH6-1",
                "NP_062765.1",
                "melanoma antigen, family D, 1; MAGE-D1 antigen; neurotrophin receptor-interacting MAGE homolog"
            ],
            [
                "Q9QYH6-1",
                "NP_062765",
                "melanoma-associated antigen D1"
            ],
            [
                "Q9QYH6-1",
                "NP_062765",
                "melanoma antigen, family D, 1; MAGE-D1 antigen; neurotrophin receptor-interacting MAGE homolog"
            ],
            [
                "Q08AU9-1",
                "NP_001156945.1",
                "UPF0450 protein C17orf58 homolog isoform 1 precursor"
            ],
            [
                "Q08AU9-1",
                "NP_001156945.1",
                "UPF0450 protein C17orf58 homolog"
            ],
            [
                "Q08AU9-1",
                "NP_001156945",
                "UPF0450 protein C17orf58 homolog isoform 1 precursor"
            ],
            [
                "Q08AU9-1",
                "NP_001156945",
                "UPF0450 protein C17orf58 homolog"
            ],
            [
                "Q08AU7-1",
                "NP_001191749.1",
                "myeloid-associated differentiation marker-like protein 2 isoform 2"
            ],
            [
                "Q08AU7-1",
                "NP_001191749.1",
                "myeloid-associated differentiation marker-like protein 2"
            ],
            [
                "Q08AU7-1",
                "NP_001191749",
                "myeloid-associated differentiation marker-like protein 2 isoform 2"
            ],
            [
                "Q08AU7-1",
                "NP_001191749",
                "myeloid-associated differentiation marker-like protein 2"
            ],
            [
                "Q5EBH1-1",
                "NP_001298023.1",
                "ras association domain-containing protein 5 isoform 2"
            ],
            [
                "Q5EBH1-1",
                "NP_001298023.1",
                "novel ras effector 1; Rap1-binding protein; new ras effector 1; regulator for cell adhesion and polarization enriched in lymphoid tissues; ras association domain-containing protein 5"
            ],
            [
                "Q5EBH1-1",
                "NP_001298023",
                "ras association domain-containing protein 5 isoform 2"
            ],
            [
                "Q5EBH1-1",
                "NP_001298023",
                "novel ras effector 1; Rap1-binding protein; new ras effector 1; regulator for cell adhesion and polarization enriched in lymphoid tissues; ras association domain-containing protein 5"
            ],
            [
                "Q80YU0-1",
                "NP_899004.1",
                "protein ABHD16B"
            ],
            [
                "Q80YU0-1",
                "NP_899004.1",
                "abhydrolase domain-containing protein 16B; alpha/beta hydrolase domain-containing protein 16B"
            ],
            [
                "Q80YU0-1",
                "NP_899004",
                "protein ABHD16B"
            ],
            [
                "Q80YU0-1",
                "NP_899004",
                "abhydrolase domain-containing protein 16B; alpha/beta hydrolase domain-containing protein 16B"
            ],
            [
                "Q5SRT8-1",
                "NP_001038995.1",
                "cyclin-J-like protein"
            ],
            [
                "Q5SRT8-1",
                "NP_001038995",
                "cyclin-J-like protein"
            ],
            [
                "P70414-1",
                "NP_035536.2",
                "sodium/calcium exchanger 1 isoform A precursor"
            ],
            [
                "P70414-1",
                "NP_035536.2",
                "Na/Ca exchanger; Na(+)/Ca(2+)-exchange protein 1; sodium/calcium exchanger 1; solute carrier family 8 member 1"
            ],
            [
                "P70414-1",
                "NP_035536",
                "sodium/calcium exchanger 1 isoform A precursor"
            ],
            [
                "P70414-1",
                "NP_035536",
                "Na/Ca exchanger; Na(+)/Ca(2+)-exchange protein 1; sodium/calcium exchanger 1; solute carrier family 8 member 1"
            ],
            [
                "A0A0U1RNG7-1",
                "XP_006507673.1",
                "BTB/POZ domain-containing protein KCTD14 isoform X3"
            ],
            [
                "A0A0U1RNG7-1",
                "XP_006507673",
                "BTB/POZ domain-containing protein KCTD14 isoform X3"
            ],
            [
                "P70419-1",
                "NP_056551.2",
                "polypeptide N-acetylgalactosaminyltransferase 3"
            ],
            [
                "P70419-1",
                "NP_056551.2",
                "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3; ppGaNTase-T3; galNAc-T3; pp-GaNTase 3; polypeptide GalNAc transferase 3; protein-UDP acetylgalactosaminyltransferase 3; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3"
            ],
            [
                "P70419-1",
                "NP_056551",
                "polypeptide N-acetylgalactosaminyltransferase 3"
            ],
            [
                "P70419-1",
                "NP_056551",
                "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3; ppGaNTase-T3; galNAc-T3; pp-GaNTase 3; polypeptide GalNAc transferase 3; protein-UDP acetylgalactosaminyltransferase 3; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3"
            ],
            [
                "Q9EP78-1",
                "NP_068361.1",
                "carbohydrate sulfotransferase 7 precursor"
            ],
            [
                "Q9EP78-1",
                "NP_068361.1",
                "carbohydrate sulfotransferase 7; chondroitin 6-sulfotransferase 2; N-acetylglucosamine 6-O-sulfotransferase 1; galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5; N-acetylglucosamine 6-O-sulfotransferase 4"
            ],
            [
                "Q9EP78-1",
                "NP_068361",
                "carbohydrate sulfotransferase 7 precursor"
            ],
            [
                "Q9EP78-1",
                "NP_068361",
                "carbohydrate sulfotransferase 7; chondroitin 6-sulfotransferase 2; N-acetylglucosamine 6-O-sulfotransferase 1; galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5; N-acetylglucosamine 6-O-sulfotransferase 4"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Protein Names (NCBI RefSeq)\n\nVersion\n   - 1.9.9\n\nCreated on\n  - 2020-03-15T13:29:07.339002\n\nModified on\n   - 2020-03-16T11:18:46.916940\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein Names (NCBI RefSeq) dataset contains mouse [taxid:10090] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_10090.gpff\n      URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_10090.gpff\n      Name: mouse_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_refseq.csv\n   Output Subdomain\n      Name: mouse_protein_proteinnames_refseq.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_proteinnames_refseq.csv\n      Name: mouse_protein_proteinnames_refseq.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/mouse_protein_proteinnames_refseq.csv"
}