{ "bcoid": "GLY_000254", "title": "Mouse Phosphorylation Sites (UniProtKB)", "description": "The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical ...", "filename": "mouse_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q6PDN3-1...", "1798..." ], [ "Q6PDN3-1...", "1798..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q6PDN3-1", "1798", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q6PDN3-1", "1798", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q6PDN3-1", "1798", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2478", "Ser", "", "", "protein_xref_uniprotkb", "Q9JLN9", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2478", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2478", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P54310-1", "650", "Ser", "", "", "protein_xref_uniprotkb", "P54310", "protein_xref_uniprotkb", "P54310", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q01320-1", "1291", "Ser", "", "", "protein_xref_uniprotkb", "Q01320", "protein_xref_uniprotkb", "Q01320", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P25799-1", "940", "Ser", "", "", "protein_xref_uniprotkb", "P25799", "protein_xref_uniprotkb", "P25799", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P25799-1", "940", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P25799", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9WTK5-1", "865", "Ser", "", "", "protein_xref_uniprotkb", "Q9WTK5", "protein_xref_uniprotkb", "Q9WTK5", "Phosphoserine", "Phosphoserine; by MAP3K14", "" ], [ "Q64511-1", "1441", "Ser", "", "", "protein_xref_uniprotkb", "Q64511", "protein_xref_uniprotkb", "Q64511", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "A2CG63-1", "790", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2CG63-1", "790", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "O54834-1", "790", "Ser", "", "", "protein_xref_uniprotkb", "O54834", "protein_xref_uniprotkb", "O54834", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "E9Q4N7-1", "1550", "Ser", "", "", "protein_xref_uniprotkb", "E9Q4N7", "protein_xref_uniprotkb", "E9Q4N7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P11531-1", "3659", "Ser", "", "", "protein_xref_uniprotkb", "P11531", "protein_xref_uniprotkb", "P11531", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60592-1", "841", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "841", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "1275", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "1275", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "1275", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P97393-1", "1217", "Ser", "", "", "protein_xref_uniprotkb", "P97393", "protein_xref_uniprotkb", "P97393", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P97393-1", "1217", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97393", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2CG63-1", "1157", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P30999-1", "906", "Thr", "", "", "protein_xref_uniprotkb", "P30999", "protein_xref_uniprotkb", "P30999", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q3UJB9-1", "906", "Thr", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphothreonine", "Phosphothreonine", "ECO_0000244" ], [ "Q3UJB9-1", "906", "Thr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q3UJB9", "Phosphothreonine", "Phosphothreonine", "ECO_0000244" ], [ "Q3UQS8-1", "955", "Ser", "", "", "protein_xref_uniprotkb", "Q3UQS8", "protein_xref_uniprotkb", "Q3UQS8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "A2BH40-1", "1942", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O54834-1", "824", "Ser", "", "", "protein_xref_uniprotkb", "O54834", "protein_xref_uniprotkb", "O54834", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "O54834-1", "824", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "O54834", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P25799-1", "930", "Ser", "", "", "protein_xref_uniprotkb", "P25799", "protein_xref_uniprotkb", "P25799", "Phosphoserine", "Phosphoserine; by IKKB", "" ], [ "P11531-1", "3616", "Ser", "", "", "protein_xref_uniprotkb", "P11531", "protein_xref_uniprotkb", "P11531", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P11531-1", "3616", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "P11531", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P11531-1", "3616", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P11531", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UQS8-1", "1026", "Ser", "", "", "protein_xref_uniprotkb", "Q3UQS8", "protein_xref_uniprotkb", "Q3UQS8", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UQS8-1", "1026", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q3UQS8", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2481", "Ser", "", "", "protein_xref_uniprotkb", "Q9JLN9", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2481", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9JLN9-1", "2481", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9JLN9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UJB9-1", "895", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UJB9-1", "895", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9Z0R4-1", "895", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z0R4", "protein_xref_uniprotkb", "Q9Z0R4", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9Z0R4-1", "895", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q9Z0R4", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9Z0R4-1", "895", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9Z0R4", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "1302", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q5U5Q9-1", "637", "Ser", "", "", "protein_xref_uniprotkb", "Q5U5Q9", "protein_xref_uniprotkb", "Q5U5Q9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P30999-1", "916", "Thr", "", "", "protein_xref_uniprotkb", "P30999", "protein_xref_uniprotkb", "P30999", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q3UJB9-1", "884", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UJB9-1", "884", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q3UQS8-1", "787", "Ser", "", "", "protein_xref_uniprotkb", "Q3UQS8", "protein_xref_uniprotkb", "Q3UQS8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60592-1", "1446", "Thr", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P13405-1", "848", "Ser", "", "", "protein_xref_uniprotkb", "P13405", "protein_xref_uniprotkb", "P13405", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P13405-1", "848", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P13405", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q61221-1", "668", "Ser", "", "", "protein_xref_uniprotkb", "Q61221", "protein_xref_uniprotkb", "Q61221", "Phosphoserine", "Phosphoserine; by PLK3", "" ], [ "A2CG63-1", "668", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2CG63-1", "668", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60592-1", "1194", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P97393-1", "1194", "Ser", "", "", "protein_xref_uniprotkb", "P97393", "protein_xref_uniprotkb", "P97393", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P97393-1", "1194", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97393", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2CG63-1", "1161", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q6PDN3-1", "1801", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q6PDN3-1", "1801", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "E9Q4N7-1", "1723", "Ser", "", "", "protein_xref_uniprotkb", "E9Q4N7", "protein_xref_uniprotkb", "E9Q4N7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q64511-1", "1596", "Tyr", "", "", "protein_xref_uniprotkb", "Q64511", "protein_xref_uniprotkb", "Q64511", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q8VDD5-1", "1714", "Ser", "", "", "protein_xref_uniprotkb", "Q8VDD5", "protein_xref_uniprotkb", "Q8VDD5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "A2BH40-1", "697", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2BH40-1", "697", "Ser", "", "", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "A2BH40-1", "697", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "O54834-1", "781", "Ser", "", "", "protein_xref_uniprotkb", "O54834", "protein_xref_uniprotkb", "O54834", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O89090-1", "2", "Ser", "", "", "protein_xref_uniprotkb", "O89090", "protein_xref_uniprotkb", "O89090", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P47811-1", "2", "Ser", "", "", "protein_xref_uniprotkb", "P47811", "protein_xref_uniprotkb", "P47811", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P62137-1", "2", "Ser", "", "", "protein_xref_uniprotkb", "P62137", "protein_xref_uniprotkb", "P62137", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q61214-1", "758", "Ser", "", "", "protein_xref_uniprotkb", "Q61214", "protein_xref_uniprotkb", "Q61214", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q61214-1", "758", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q61214", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "O54834-1", "758", "Ser", "", "", "protein_xref_uniprotkb", "O54834", "protein_xref_uniprotkb", "O54834", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "A2CG63-1", "1016", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q6PHU5-1", "809", "Ser", "", "", "protein_xref_uniprotkb", "Q6PHU5", "protein_xref_uniprotkb", "Q6PHU5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60790-1", "809", "Ser", "", "", "protein_xref_uniprotkb", "Q60790", "protein_xref_uniprotkb", "Q60790", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q60790-1", "809", "Ser", "", "", "protein_xref_pubmed", "19144319", "protein_xref_uniprotkb", "Q60790", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "P35969-1", "1322", "Tyr", "", "", "protein_xref_uniprotkb", "P35969", "protein_xref_uniprotkb", "P35969", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q9Z0R4-1", "1638", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z0R4", "protein_xref_uniprotkb", "Q9Z0R4", "Phosphoserine", "Phosphoserine", "ECO_0000244" ], [ "Q9Z0R4-1", "1638", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9Z0R4", "Phosphoserine", "Phosphoserine", "ECO_0000244" ] ] }, "readme": "Name\n - Mouse Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.9.9\n\nCreated on\n - 2019-09-06T14:06:38.981217\n\nModified on\n - 2020-04-10T12:46:17.110364\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv" }