{ "bcoid": "GLY_000123", "title": "Human UniProtKB Xref PRO", "description": "The Human UniprotKB Xref PRO contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Pro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "P23919-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_pro", "PR_P30613", "" ], [ "P23919-1", "protein_xref_pro", "PR_P23919", "" ], [ "Q8NHX4-1", "protein_xref_pro", "PR_Q8NHX4", "" ], [ "Q8NHX9-1", "protein_xref_pro", "PR_Q8NHX9", "" ], [ "H3BTG2-1", "protein_xref_pro", "PR_H3BTG2", "" ], [ "Q9C0H2-1", "protein_xref_pro", "PR_Q9C0H2", "" ], [ "Q9C0H5-1", "protein_xref_pro", "PR_Q9C0H5", "" ], [ "Q9C0H6-1", "protein_xref_pro", "PR_Q9C0H6", "" ], [ "Q9C0H9-5", "protein_xref_pro", "PR_Q9C0H9", "" ], [ "Q96J66-1", "protein_xref_pro", "PR_Q96J66", "" ], [ "Q96J65-1", "protein_xref_pro", "PR_Q96J65", "" ], [ "Q9NYS7-1", "protein_xref_pro", "PR_Q9NYS7", "" ], [ "P40424-1", "protein_xref_pro", "PR_P40424", "" ], [ "P40425-1", "protein_xref_pro", "PR_P40425", "" ], [ "P40426-1", "protein_xref_pro", "PR_P40426", "" ], [ "P40429-1", "protein_xref_pro", "PR_P40429", "" ], [ "Q9H2I8-1", "protein_xref_pro", "PR_Q9H2I8", "" ], [ "P03891-1", "protein_xref_pro", "PR_P03891", "" ], [ "P03897-1", "protein_xref_pro", "PR_P03897", "" ], [ "P02768-1", "protein_xref_pro", "PR_P02768", "" ], [ "P02760-1", "protein_xref_pro", "PR_P02760", "" ], [ "P02763-1", "protein_xref_pro", "PR_P02763", "" ], [ "P02765-1", "protein_xref_pro", "PR_P02765", "" ], [ "P82921-1", "protein_xref_pro", "PR_P82921", "" ], [ "P02766-1", "protein_xref_pro", "PR_P02766", "" ], [ "Q9P2J5-1", "protein_xref_pro", "PR_Q9P2J5", "" ], [ "H0YL14-1", "protein_xref_pro", "PR_H0YL14", "" ], [ "Q9P2J8-1", "protein_xref_pro", "PR_Q9P2J8", "" ], [ "O43399-1", "protein_xref_pro", "PR_O43399", "" ], [ "Q9BXR3-1", "protein_xref_pro", "PR_Q69384", "" ], [ "Q5VVP1-1", "protein_xref_pro", "PR_Q5VVP1", "" ], [ "Q9BZG2-1", "protein_xref_pro", "PR_Q9BZG2", "" ], [ "Q9BZG8-1", "protein_xref_pro", "PR_Q9BZG8", "" ], [ "Q6NUK4-1", "protein_xref_pro", "PR_Q6NUK4", "" ], [ "P01236-1", "protein_xref_pro", "PR_P01236", "" ], [ "Q8N865-1", "protein_xref_pro", "PR_Q8N865", "" ], [ "Q6NX49-1", "protein_xref_pro", "PR_Q6NX49", "" ], [ "P09001-1", "protein_xref_pro", "PR_P09001", "" ], [ "P53708-1", "protein_xref_pro", "PR_P53708", "" ], [ "Q6NX45-1", "protein_xref_pro", "PR_Q6NX45", "" ], [ "Q9H963-1", "protein_xref_pro", "PR_Q9H963", "" ], [ "Q14568-1", "protein_xref_pro", "PR_Q14568", "" ], [ "Q9H967-1", "protein_xref_pro", "PR_Q9H967", "" ], [ "Q14563-1", "protein_xref_pro", "PR_Q14563", "" ], [ "Q14562-1", "protein_xref_pro", "PR_Q14562", "" ], [ "Q14566-1", "protein_xref_pro", "PR_Q14566", "" ], [ "Q14565-1", "protein_xref_pro", "PR_Q14565", "" ], [ "A6NIR3-1", "protein_xref_pro", "PR_A6NIR3", "" ], [ "Q6ZMG9-1", "protein_xref_pro", "PR_Q6ZMG9", "" ], [ "Q86VY4-1", "protein_xref_pro", "PR_Q86VY4", "" ], [ "Q86VY9-1", "protein_xref_pro", "PR_Q86VY9", "" ], [ "P19075-1", "protein_xref_pro", "PR_P19075", "" ], [ "O60729-1", "protein_xref_pro", "PR_O60729", "" ], [ "A6NCL1-1", "protein_xref_pro", "PR_A6NCL1", "" ], [ "Q8WUF8-1", "protein_xref_pro", "PR_Q8WUF8", "" ], [ "Q96BT1-1", "protein_xref_pro", "PR_Q96BT1", "" ], [ "Q8WUF5-1", "protein_xref_pro", "PR_Q8WUF5", "" ], [ "Q96BT3-1", "protein_xref_pro", "PR_Q96BT3", "" ], [ "Q96BT7-1", "protein_xref_pro", "PR_Q96BT7", "" ], [ "Q99519-1", "protein_xref_pro", "PR_Q99519", "" ], [ "O15417-1", "protein_xref_pro", "PR_O15417", "" ], [ "Q96RU7-1", "protein_xref_pro", "PR_Q96RU7", "" ], [ "Q96RU3-1", "protein_xref_pro", "PR_Q96RU3", "" ], [ "Q96RU2-1", "protein_xref_pro", "PR_Q96RU2", "" ], [ "Q96RU8-1", "protein_xref_pro", "PR_Q96RU8", "" ], [ "Q9ULV4-1", "protein_xref_pro", "PR_Q9ULV4", "" ], [ "Q9Y5A7-1", "protein_xref_pro", "PR_Q9Y5A7", "" ], [ "Q9Y5A6-1", "protein_xref_pro", "PR_Q9Y5A6", "" ], [ "Q13643-1", "protein_xref_pro", "PR_Q13643", "" ], [ "Q13642-2", "protein_xref_pro", "PR_Q13642", "" ], [ "Q13641-1", "protein_xref_pro", "PR_Q13641", "" ], [ "Q9Y5A9-1", "protein_xref_pro", "PR_Q9Y5A9", "" ], [ "Q02127-1", "protein_xref_pro", "PR_Q02127", "" ], [ "Q6ZRV2-1", "protein_xref_pro", "PR_Q6ZRV2", "" ], [ "Q5T6X5-1", "protein_xref_pro", "PR_Q5T6X5", "" ], [ "A8MZ59-2", "protein_xref_pro", "PR_A8MZ59", "" ], [ "Q9Y3T6-1", "protein_xref_pro", "PR_Q9Y3T6", "" ], [ "P16520-1", "protein_xref_pro", "PR_P16520", "" ], [ "Q8NCJ5-1", "protein_xref_pro", "PR_Q8NCJ5", "" ], [ "Q9Y296-1", "protein_xref_pro", "PR_Q9Y296", "" ], [ "Q9Y297-1", "protein_xref_pro", "PR_Q9Y297", "" ], [ "Q9Y294-1", "protein_xref_pro", "PR_Q9Y294", "" ], [ "Q9Y295-1", "protein_xref_pro", "PR_Q9Y295", "" ], [ "Q6ICB4-1", "protein_xref_pro", "PR_Q6ICB4", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref PRO\n\nVersion\n - 1.9.9\n\nCreated on\n - 2019-03-15T16:08:14.880048\n\nModified on\n - 2020-04-10T11:39:35.092004\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref PRO contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them.\n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_pro.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_pro.csv\n Name: human_protein_xref_pro.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/human_protein_xref_pro.csv" }