{ "bcoid": "GLY_000113", "title": "Human UniProtKB Xref OMA", "description": "The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "P23919-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_oma", "MVRVHHL", "" ], [ "P23919-1", "protein_xref_oma", "YETSSFQ", "" ], [ "Q8NHX4-1", "protein_xref_oma", "TFYRKPP", "" ], [ "Q8NHX9-1", "protein_xref_oma", "PPCGFTE", "" ], [ "Q9C0H2-1", "protein_xref_oma", "DTYITRV", "" ], [ "Q9C0H5-1", "protein_xref_oma", "QDDAMSW", "" ], [ "Q9C0H6-1", "protein_xref_oma", "SKVWSTM", "" ], [ "Q96J66-1", "protein_xref_oma", "MKNKMCV", "" ], [ "Q96J65-1", "protein_xref_oma", "MRVVKYF", "" ], [ "Q9NYS7-1", "protein_xref_oma", "GHVQWVY", "" ], [ "P40424-1", "protein_xref_oma", "MAGNPYG", "" ], [ "P40425-1", "protein_xref_oma", "GAGQMYS", "" ], [ "P03891-1", "protein_xref_oma", "WVPEVTQ", "" ], [ "P03897-1", "protein_xref_oma", "RFPVKYY", "" ], [ "P02768-1", "protein_xref_oma", "ADPHACY", "" ], [ "P82921-1", "protein_xref_oma", "RIYNTEM", "" ], [ "Q9P2J5-1", "protein_xref_oma", "KFIEWQF", "" ], [ "H0YL14-1", "protein_xref_oma", "VRTSHLA", "" ], [ "Q9P2J8-1", "protein_xref_oma", "MGGLWKW", "" ], [ "O43399-1", "protein_xref_oma", "RARPFSH", "" ], [ "Q5VVP1-1", "protein_xref_oma", "ARSHMEN", "" ], [ "Q9BZG2-1", "protein_xref_oma", "ADWKPIP", "" ], [ "Q9BZG8-1", "protein_xref_oma", "PGQVLGC", "" ], [ "Q6NUK4-1", "protein_xref_oma", "DLTISWF", "" ], [ "Q8N865-1", "protein_xref_oma", "EEHRPKC", "" ], [ "Q6NX49-1", "protein_xref_oma", "ESHQCAR", "" ], [ "P53708-1", "protein_xref_oma", "NNEDAFE", "" ], [ "Q6NX45-1", "protein_xref_oma", "ESHTDCE", "" ], [ "Q9H967-1", "protein_xref_oma", "TVVRHNC", "" ], [ "Q14563-1", "protein_xref_oma", "MEQGDRL", "" ], [ "Q14562-1", "protein_xref_oma", "RIQKAIC", "" ], [ "Q14566-1", "protein_xref_oma", "KYYIAQI", "" ], [ "Q14565-1", "protein_xref_oma", "VFMTNQV", "" ], [ "Q6ZMG9-1", "protein_xref_oma", "HCYYNYP", "" ], [ "Q86VY4-1", "protein_xref_oma", "APETCST", "" ], [ "Q86VY9-1", "protein_xref_oma", "RIKEQKH", "" ], [ "P19075-1", "protein_xref_oma", "IWIRVSK", "" ], [ "O60729-1", "protein_xref_oma", "TFDLHEF", "" ], [ "A6NCL1-1", "protein_xref_oma", "PQGQAFI", "" ], [ "Q8WUF8-1", "protein_xref_oma", "EFGYAFN", "" ], [ "Q96BT1-1", "protein_xref_oma", "LFTKPRM", "" ], [ "Q8WUF5-1", "protein_xref_oma", "NAFWEQG", "" ], [ "Q96BT3-1", "protein_xref_oma", "HQFPEPA", "" ], [ "Q96BT7-1", "protein_xref_oma", "TNRTEFQ", "" ], [ "Q99519-1", "protein_xref_oma", "FSPDECQ", "" ], [ "Q96RU3-1", "protein_xref_oma", "IPMNEGE", "" ], [ "Q96RU2-1", "protein_xref_oma", "GDWPVGM", "" ], [ "Q96RU8-1", "protein_xref_oma", "FFERDFG", "" ], [ "Q9ULV4-1", "protein_xref_oma", "KVFIWEV", "" ], [ "Q9Y5A6-1", "protein_xref_oma", "WEPLYIQ", "" ], [ "Q13643-1", "protein_xref_oma", "RILCRDC", "" ], [ "Q13642-2", "protein_xref_oma", "EKDGHHC", "" ], [ "Q13641-1", "protein_xref_oma", "PYVRNLF", "" ], [ "Q9Y5A9-1", "protein_xref_oma", "SPQARPX", "" ], [ "Q02127-1", "protein_xref_oma", "LQNAMGF", "" ], [ "A1A4G5-1", "protein_xref_oma", "EKEGRGH", "" ], [ "Q6ZRV2-1", "protein_xref_oma", "FKIQSSH", "" ], [ "Q5T6X5-1", "protein_xref_oma", "VILCKQE", "" ], [ "A8MZ59-2", "protein_xref_oma", "QRAKWKK", "" ], [ "P16520-1", "protein_xref_oma", "CDFTAKL", "" ], [ "Q9Y296-1", "protein_xref_oma", "GQRDGIN", "" ], [ "Q9Y297-1", "protein_xref_oma", "PDLKCRR", "" ], [ "Q9Y294-1", "protein_xref_oma", "YADPEMR", "" ], [ "Q9Y295-1", "protein_xref_oma", "SAKHPGQ", "" ], [ "P35637-1", "protein_xref_oma", "QNSYGTQ", "" ], [ "Q6ICB4-1", "protein_xref_oma", "MKLNKRS", "" ], [ "Q6ICB0-1", "protein_xref_oma", "HGKEFFF", "" ], [ "P35070-1", "protein_xref_oma", "PKRKGHF", "" ], [ "P61289-1", "protein_xref_oma", "PCNKPLC", "" ], [ "O75420-1", "protein_xref_oma", "QYMMRRK", "" ], [ "O75425-1", "protein_xref_oma", "RHFPENP", "" ], [ "O75427-1", "protein_xref_oma", "LSTQATY", "" ], [ "O75426-1", "protein_xref_oma", "SCCLPHL", "" ], [ "Q99619-1", "protein_xref_oma", "HAWEIGW", "" ], [ "Q8IU68-1", "protein_xref_oma", "TNTYLFY", "" ], [ "Q99614-1", "protein_xref_oma", "STQNFQM", "" ], [ "O00507-1", "protein_xref_oma", "ERMILPM", "" ], [ "O00505-1", "protein_xref_oma", "XEAVWFL", "" ], [ "P20132-1", "protein_xref_oma", "AEQGCEH", "" ], [ "Q8N9C0-1", "protein_xref_oma", "ITKSKNH", "" ], [ "Q8N2R0-1", "protein_xref_oma", "FHPKQAA", "" ], [ "Q8IYD2-1", "protein_xref_oma", "KWEVLPA", "" ], [ "Q8IYD1-1", "protein_xref_oma", "NDETCTG", "" ], [ "Q6IPW1-1", "protein_xref_oma", "LRWCSTC", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OMA\n\nVersion\n - 1.9.9\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T11:37:06.606749\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_oma.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oma.csv\n Name: human_protein_xref_oma.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/human_protein_xref_oma.csv" }