{ "bcoid": "GLY_000102", "title": "Human UniProtKB Xref HGNC", "description": "The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_hgnc.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Hgnc cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O75818-1...", "protein_xref..." ], [ "Q14697-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "O75818-1", "protein_xref_hgnc", "20992", "RPP40" ], [ "Q14697-1", "protein_xref_hgnc", "4138", "GANAB" ], [ "P30613-1", "protein_xref_hgnc", "9020", "PKLR" ], [ "P05093-1", "protein_xref_hgnc", "2593", "CYP17A1" ], [ "A0A1W2PQ27-1", "protein_xref_hgnc", "43626", "SSU72P7" ], [ "Q8TEU7-1", "protein_xref_hgnc", "20655", "RAPGEF6" ], [ "P14136-1", "protein_xref_hgnc", "4235", "GFAP" ], [ "P09471-1", "protein_xref_hgnc", "4389", "GNAO1" ], [ "Q92994-1", "protein_xref_hgnc", "11551", "BRF1" ], [ "P23769-1", "protein_xref_hgnc", "4171", "GATA2" ], [ "Q7RTN6-1", "protein_xref_hgnc", "30172", "STRADA" ], [ "O75962-1", "protein_xref_hgnc", "12303", "TRIO" ], [ "P23919-1", "protein_xref_hgnc", "3061", "DTYMK" ], [ "Q8NHX4-1", "protein_xref_hgnc", "17884", "SPATA3" ], [ "Q8NHX9-1", "protein_xref_hgnc", "20820", "TPCN2" ], [ "H3BTG2-1", "protein_xref_hgnc", "44651", "TEX46" ], [ "Q92614-1", "protein_xref_hgnc", "31104", "MYO18A" ], [ "P10242-1", "protein_xref_hgnc", "7545", "MYB" ], [ "Q9GZW8-1", "protein_xref_hgnc", "13378", "MS4A7" ], [ "Q9C0H2-1", "protein_xref_hgnc", "22222", "TTYH3" ], [ "Q9C0H5-1", "protein_xref_hgnc", "29351", "ARHGAP39" ], [ "Q9C0H6-1", "protein_xref_hgnc", "6355", "KLHL4" ], [ "Q9C0H9-5", "protein_xref_hgnc", "29506", "SRCIN1" ], [ "Q86VV8-1", "protein_xref_hgnc", "18654", "RTTN" ], [ "Q8N6H7-1", "protein_xref_hgnc", "13504", "ARFGAP2" ], [ "Q96J66-1", "protein_xref_hgnc", "14639", "ABCC11" ], [ "Q96J65-1", "protein_xref_hgnc", "14640", "ABCC12" ], [ "P25705-1", "protein_xref_hgnc", "823", "ATP5F1A" ], [ "Q6UW68-1", "protein_xref_hgnc", "29631", "TMEM205" ], [ "Q9BUZ4-1", "protein_xref_hgnc", "12034", "TRAF4" ], [ "Q8NC06-1", "protein_xref_hgnc", "23337", "ACBD4" ], [ "Q8IYT4-1", "protein_xref_hgnc", "25387", "KATNAL2" ], [ "Q53F39-1", "protein_xref_hgnc", "15988", "MPPE1" ], [ "A6NC51-1", "protein_xref_hgnc", "34415", "TMEM150B" ], [ "Q13829-1", "protein_xref_hgnc", "11894", "TNFAIP1" ], [ "Q8NBW4-1", "protein_xref_hgnc", "26907", "SLC38A9" ], [ "Q9NYS7-1", "protein_xref_hgnc", "19222", "WSB2" ], [ "Q14766-1", "protein_xref_hgnc", "6714", "LTBP1" ], [ "P40424-1", "protein_xref_hgnc", "8632", "PBX1" ], [ "P40425-1", "protein_xref_hgnc", "8633", "PBX2" ], [ "P40426-1", "protein_xref_hgnc", "8634", "PBX3" ], [ "P40429-1", "protein_xref_hgnc", "10304", "RPL13A" ], [ "Q9H2I8-1", "protein_xref_hgnc", "23405", "LRMDA" ], [ "O14513-1", "protein_xref_hgnc", "29847", "NCKAP5" ], [ "P03891-1", "protein_xref_hgnc", "7456", "MT-ND2" ], [ "Q15326-1", "protein_xref_hgnc", "16966", "ZMYND11" ], [ "P03897-1", "protein_xref_hgnc", "7458", "MT-ND3" ], [ "P02768-1", "protein_xref_hgnc", "399", "ALB" ], [ "O94916-1", "protein_xref_hgnc", "7774", "NFAT5" ], [ "Q9Y237-1", "protein_xref_hgnc", "8992", "PIN4" ], [ "Q9UGJ0-1", "protein_xref_hgnc", "9386", "PRKAG2" ], [ "P35749-1", "protein_xref_hgnc", "7569", "MYH11" ], [ "P02760-1", "protein_xref_hgnc", "453", "AMBP" ], [ "P02763-1", "protein_xref_hgnc", "8498", "ORM1" ], [ "P02765-1", "protein_xref_hgnc", "349", "AHSG" ], [ "P82921-1", "protein_xref_hgnc", "14046", "MRPS21" ], [ "Q9Y228-1", "protein_xref_hgnc", "30766", "TRAF3IP3" ], [ "P02766-1", "protein_xref_hgnc", "12405", "TTR" ], [ "Q9H6T0-1", "protein_xref_hgnc", "26152", "ESRP2" ], [ "O95208-1", "protein_xref_hgnc", "18639", "EPN2" ], [ "Q4G0P3-1", "protein_xref_hgnc", "19368", "HYDIN" ], [ "P43146-1", "protein_xref_hgnc", "2701", "DCC" ], [ "A0A494C086-1", "protein_xref_hgnc", "51517", "SPDYE21" ], [ "Q86W25-1", "protein_xref_hgnc", "22937", "NLRP13" ], [ "Q9Y2T1-1", "protein_xref_hgnc", "904", "AXIN2" ], [ "Q9BTE0-1", "protein_xref_hgnc", "23133", "NAT9" ], [ "P49640-1", "protein_xref_hgnc", "3506", "EVX1" ], [ "Q6E0U4-1", "protein_xref_hgnc", "25063", "DMKN" ], [ "Q96Q35-1", "protein_xref_hgnc", "14439", "FLACC1" ], [ "P49789-1", "protein_xref_hgnc", "3701", "FHIT" ], [ "Q9P2J5-1", "protein_xref_hgnc", "6512", "LARS1" ], [ "P13804-1", "protein_xref_hgnc", "3481", "ETFA" ], [ "Q5ZPR3-1", "protein_xref_hgnc", "19137", "CD276" ], [ "Q9NQU5-1", "protein_xref_hgnc", "16061", "PAK6" ], [ "H0YL14-1", "protein_xref_hgnc", "31009", "TMEM250" ], [ "Q9BVP2-1", "protein_xref_hgnc", "29931", "GNL3" ], [ "Q9GZS3-1", "protein_xref_hgnc", "30300", "WDR61" ], [ "Q9HBL0-1", "protein_xref_hgnc", "11973", "TNS1" ], [ "Q9P2J8-1", "protein_xref_hgnc", "29254", "ZNF624" ], [ "O43399-1", "protein_xref_hgnc", "12007", "TPD52L2" ], [ "Q9BXR3-1", "protein_xref_hgnc", "13915", "ERVK-6" ], [ "Q9BXR3-1", "protein_xref_hgnc", "13915", "ERVK-6" ], [ "P36402-1", "protein_xref_hgnc", "11639", "TCF7" ], [ "P06744-1", "protein_xref_hgnc", "4458", "GPI" ] ] }, "readme": "Name\n - Human UniProtKB Xref HGNC\n\nVersion\n - 1.9.9\n\nCreated on\n - 2019-03-15T12:12:30.919588\n\nModified on\n - 2020-04-10T11:34:52.076213\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to HGNC accessions/identifiers. he dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The HUGO Gene Nomenclature Committee is a committee of the Human Genome Organisation that sets the standards for human gene nomenclature. The HGNC approves a unique and meaningful name for every known human gene, based on a query of experts\n\nDescription Domain\n Keywords\n - HGNC\n - gene symbol\n - gene name\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to HGNC database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_hgnc.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.csv\n Name: human_protein_xref_hgnc.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/human_protein_xref_hgnc.csv" }