{ "bcoid": "GLY_000034", "title": "Mouse Protein Information (UniProtKB)", "description": "The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with ...", "filename": "mouse_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "TM9S4_MOUSE..." ], [ "Q8BH27-1...", "MEGF9_MOUSE..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q8BH24-1", "TM9S4_MOUSE", "74693", "643" ], [ "Q8BH27-1", "MEGF9_MOUSE", "62831", "600" ], [ "Q8BH26-1", "TM251_MOUSE", "18720", "163" ], [ "Q9WVQ1-1", "MAGI2_MOUSE", "140919", "1275" ], [ "Q9WVQ1-1", "MAGI2_MOUSE", "140919", "1275" ], [ "E9Q287-1", "Q8BIB2_MOUSE", "135185", "1204" ], [ "O35405-1", "D3YY25_MOUSE", "54389", "488" ], [ "Q922G0-1", "F6R114_MOUSE", "34170", "311" ], [ "Q62267-1", "SPR1B_MOUSE", "16636", "153" ], [ "Q9DB34-1", "CHM2A_MOUSE", "25134", "222" ], [ "O35453-1", "F7C9T6_MOUSE", "46821", "436" ], [ "Q8C3X4-1", "A0A0J9YUM0_MOUSE", "72463", "651" ], [ "Q9JHR7-1", "IDE_MOUSE", "117772", "1019" ], [ "Q80ZM8-1", "CRLS1_MOUSE", "32502", "303" ], [ "Q9WVQ1-1", "MAGI2_MOUSE", "140919", "1275" ], [ "Q80T32-1", "B2RXV6_MOUSE", "99277", "903" ], [ "Q9QXP4-1", "F7BX63_MOUSE", "61987", "560" ], [ "B2RXV4-1", "FLVC1_MOUSE", "60469", "560" ], [ "P62492-1", "E9Q3P9_MOUSE", "24394", "216" ], [ "E9Q3P4-1", "E9Q3P4_MOUSE", "342472", "2997" ], [ "P63166-1", "A0A087WRQ4_MOUSE", "11557", "101" ], [ "D3YTW8-1", "D3YTW8_MOUSE", "35552", "314" ], [ "A0A087WPJ1-1", "A0A087WRQ1_MOUSE", "53451", "469" ], [ "B2RX88-1", "A0A087WRQ0_MOUSE", "138312", "1205" ], [ "A0A087WRQ3-1", "A0A087WRQ3_MOUSE", "12084", "109" ], [ "Q8K386-1", "D3YWS1_MOUSE", "24318", "212" ], [ "Q812A2-1", "E9QN14_MOUSE", "124420", "1099" ], [ "A5H0M4-1", "A5H0M4_MOUSE", "53404", "473" ], [ "G5E8K6-1", "MOT6_MOUSE", "51018", "468" ], [ "Q8K3F2-1", "MMP21_MOUSE", "65454", "568" ], [ "B1AXS0-1", "B1AXS0_MOUSE", "9937", "87" ], [ "Q6PFX9-1", "TNKS1_MOUSE", "140944", "1320" ], [ "Q6PFX9-1", "TNKS1_MOUSE", "140944", "1320" ], [ "Q8C2A2-1", "SEN54_MOUSE", "59083", "525" ], [ "Q8VES9-1", "Q8VES9_MOUSE", "34995", "310" ], [ "Q8C2A2-1", "SEN54_MOUSE", "59083", "525" ], [ "P03899-1", "NU3M_MOUSE", "13219", "115" ], [ "O70480-1", "Q8BSN6_MOUSE", "16353", "141" ], [ "Q9CWR0-1", "A0A1W2P6R9_MOUSE", "68262", "618" ], [ "O35153-1", "BET1L_MOUSE", "12428", "111" ], [ "A2RSJ4-1", "A0A1W2P6R4_MOUSE", "161940", "1457" ], [ "Q91YE9-1", "A0A1W2P6R5_MOUSE", "65002", "573" ], [ "Q02853-1", "A0A1W2P6R6_MOUSE", "55441", "492" ], [ "P03893-1", "NU2M_MOUSE", "38752", "345" ], [ "Q6DYE8-1", "A0A1W2P6R0_MOUSE", "98662", "874" ], [ "P36536-1", "A0A1W2P6R1_MOUSE", "22371", "198" ], [ "Q9R092-1", "A0A1W2P6R2_MOUSE", "36103", "317" ], [ "Q9QYH9-1", "TNF14_MOUSE", "26338", "239" ], [ "P04939-1", "Q3KQQ2_MOUSE", "21465", "184" ], [ "P52479-1", "UBP10_MOUSE", "87022", "792" ], [ "A0A0U1RNG7-1", "F7DE04_MOUSE", "33050", "287" ], [ "J3QN89-1", "J3QN89_MOUSE", "46966", "436" ], [ "P02762-1", "MUP6_MOUSE", "20649", "180" ], [ "Q9QYH6-1", "MAGD1_MOUSE", "85670", "775" ], [ "E9Q512-1", "Q8BVJ9_MOUSE", "226456", "1976" ], [ "Q3UKU1-1", "A0A1Y7VKD2_MOUSE", "72125", "639" ], [ "Q9Z282-1", "A0A1Y7VNN0_MOUSE", "42653", "382" ], [ "Q08AU9-1", "CQ058_MOUSE", "11284", "97" ], [ "Q08AU7-1", "MADL2_MOUSE", "33165", "307" ], [ "O08863-1", "E0CZ20_MOUSE", "67228", "600" ], [ "P52480-1", "A0A1L1SVH2_MOUSE", "57845", "531" ], [ "Q5EBH1-1", "RASF5_MOUSE", "46714", "413" ], [ "Q02395-1", "MTF2_MOUSE", "66924", "593" ], [ "Q02395-1", "MTF2_MOUSE", "66924", "593" ], [ "O35309-1", "B7ZD13_MOUSE", "35236", "314" ], [ "P27814-1", "G3UYE9_MOUSE", "25077", "223" ], [ "Q7TMD7-1", "DSG4_MOUSE", "114449", "1041" ], [ "Q80YU0-1", "ABHGB_MOUSE", "53297", "474" ], [ "Q8R1N4-1", "NUDC3_MOUSE", "40890", "363" ], [ "Q8BTY1-1", "A2AQY8_MOUSE", "47564", "424" ], [ "Q9ESN6-1", "E9QKC6_MOUSE", "81445", "744" ], [ "O35892-1", "SP100_MOUSE", "54727", "482" ], [ "P06684-1", "A0A0J9YUU3_MOUSE", "188878", "1680" ], [ "Q5FWA1-1", "Q5FWA1_MOUSE", "57778", "498" ], [ "Q61216-1", "A0A1L1SQT7_MOUSE", "80223", "706" ], [ "Q5SRT8-1", "CCNJL_MOUSE", "43530", "387" ], [ "O88958-1", "A0A494B9X2_MOUSE", "32549", "289" ], [ "O88632-1", "A0A0A6YXX2_MOUSE", "88549", "785" ], [ "Q9JHX3-1", "A0A0U1RP02_MOUSE", "58355", "529" ], [ "P70414-1", "NAC1_MOUSE", "108035", "970" ], [ "P70412-1", "CUZD1_MOUSE", "68082", "606" ], [ "A0A2I3BRZ3-1", "A0A2I3BRZ3_MOUSE", "86112", "793" ], [ "Q3TLD5-1", "A0A0U1RPG9_MOUSE", "59084", "531" ], [ "A0A0U1RNG7-1", "A0A0U1RPG8_MOUSE", "33050", "287" ] ] }, "readme": "Name\n - Mouse Protein Information (UniProtKB)\n\nVersion\n - 1.9.9\n\nCreated on\n - 2019-01-23T17:21:05.901631\n\nModified on\n - 2020-04-10T12:34:07.793851\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019_09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_info_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_info_uniprotkb.csv\n Name: mouse_protein_info_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.9.9/reviewed/mouse_protein_info_uniprotkb.csv" }