{
    "bcoid": "GLY_000541",
    "title": "SARS-CoV2 UniProtKB Xref NCBI Gene",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref NCBI Gene dataset contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_xref_geneid.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "NCBI Gene cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD1-1...",
                "protein_xref..."
            ],
            [
                "A0A663DJA2-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0DTD1-1",
                "protein_xref_geneid",
                "43740578",
                ""
            ],
            [
                "A0A663DJA2-1",
                "protein_xref_geneid",
                "43740576",
                ""
            ],
            [
                "P0DTC7-1",
                "protein_xref_geneid",
                "43740573",
                ""
            ],
            [
                "P0DTC6-1",
                "protein_xref_geneid",
                "43740572",
                ""
            ],
            [
                "P0DTC5-1",
                "protein_xref_geneid",
                "43740571",
                ""
            ],
            [
                "P0DTC4-1",
                "protein_xref_geneid",
                "43740570",
                ""
            ],
            [
                "P0DTC3-1",
                "protein_xref_geneid",
                "43740569",
                ""
            ],
            [
                "P0DTC2-1",
                "protein_xref_geneid",
                "43740568",
                ""
            ],
            [
                "P0DTC1-1",
                "protein_xref_geneid",
                "43740578",
                ""
            ],
            [
                "P0DTD8-1",
                "protein_xref_geneid",
                "43740574",
                ""
            ],
            [
                "P0DTC9-1",
                "protein_xref_geneid",
                "43740575",
                ""
            ],
            [
                "P0DTC8-1",
                "protein_xref_geneid",
                "43740577",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 UniProtKB Xref NCBI Gene\n\nVersion\n   - 1.8.25\n\nCreated on\n  - 2021-02-22T17:20:29.683156\n\nModified on\n   - 2021-03-02T11:27:33.353346\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref NCBI Gene dataset contains sarscov2 [taxid:2697049] UniProtKB canonical accessions cross-referenced to NCBI Gene database accessions/identifiers.  The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.\n\nDescription Domain\n   Keywords\n   - gene id\n   - NCBI gene\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI Gene database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-human-sars-coronavirus.nt\n      Name: sarscov2_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov2_protein_xref_geneid.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_geneid.csv\n      Name: sarscov2_protein_xref_geneid.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_geneid.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_xref_geneid.csv"
}