{ "bcoid": "GLY_000507", "title": "Human Cancer Mutation LOG and GOG effect", "description": "", "filename": "human_protein_mutation_cancer_glycoeffect.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Somatic Cancer Mutations LOG-GOG", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0C862-1...", "67..." ], [ "O95907-1...", "69..." ] ], "headers": [ "uniprotkb_ca...", "aa_pos..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "aa_pos" }, { "type": "string", "label": "ref_aa" }, { "type": "string", "label": "alt_aa" }, { "type": "string", "label": "chr_id" }, { "type": "string", "label": "chr_pos" }, { "type": "string", "label": "ref_nt" }, { "type": "string", "label": "alt_nt" }, { "type": "string", "label": "patients_positive" }, { "type": "string", "label": "patients_tested" }, { "type": "string", "label": "mut_freq" }, { "type": "string", "label": "data_source" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "do_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "filter_flags" }, { "type": "string", "label": "mim_id" }, { "type": "string", "label": "somatic_status" }, { "type": "string", "label": "minor_allelic_frequency" }, { "type": "string", "label": "is_known_glycoprotein" }, { "type": "string", "label": "motif_start" }, { "type": "string", "label": "ref_motif" }, { "type": "string", "label": "alt_motif" }, { "type": "string", "label": "effect" } ], [ "P0C862-1", "67", "D", "N", "13", "24892988", "G", "A", "1", "820", "0.1", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "P0C862", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (DGT->NGT).", "", "1", "", "yes", "67", "DGT", "NGT", "n-glyco-sequon-gain" ], [ "O95907-1", "69", "Y", "*", "22", "38478674", "G", "T", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "O95907", "Somatic mutation passed 1 out of 6 filters: patient freq. 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(1.3%).", "", "1", "", "no", "187", "K", "R", "o-glyco-site-loss" ], [ "P35590-1", "992", "A", "T", "1", "43784957", "G", "A", "1", "558", "0.2", "tcga", "363", "DOID:363 / uterine cancer", "protein_xref_biomuta", "P35590", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NLA->NLT).", "", "1", "", "yes", "990", "NLA", "NLT", "n-glyco-sequon-gain" ], [ "Q5VUB5-1", "676", "A", "T", "10", "15255561", "C", "T", "2", "456", "0.4", "tcga", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "Q5VUB5", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NDA->NDT). In dbSNP: rs762494380.", "", "1", "", "yes", "674", "NDA", "NDT", "n-glyco-sequon-gain" ], [ "O75795-1", "100", "S", "N", "4", "69433904", "C", "T", "1", "48", "2.1", "tcga", "2531", "DOID:2531 / hematologic cancer", "protein_xref_biomuta", "O75795", "Somatic mutation passed 2 out of 6 filters: patient freq. (2.1%); n-glyco-sequon-gain (SIS->NIS).", "", "1", "", "yes", "100", "SIS", "NIS", "n-glyco-sequon-gain" ], [ "O75795-1", "100", "S", "N", "4", "69433904", "C", "T", "1", "48", "2.1", "tcga", "2531", "DOID:2531 / hematologic cancer", "protein_xref_biomuta", "O75795", "Somatic mutation passed 2 out of 6 filters: patient freq. (2.1%); n-glyco-sequon-gain (SIS->NIS).", "", "1", "", "yes", "100", "S", "N", "o-glyco-site-loss" ], [ "Q8IYX0-1", "343", "K", "N", "7", "63727040", "G", "T", "1", "1514", "0.1", "tcga", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "Q8IYX0", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "", "1", "", "no", "343", "K", "N", "o-glyco-site-loss" ], [ "Q8WXE0-1", "581", "S", "N", "17", "73499547", "C", "T", "1", "94", "1.1", "icgc", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "Q8WXE0", "Somatic mutation passed 1 out of 6 filters: patient freq. (1.1%).", "", "1", "", "yes", "581", "S", "N", "o-glyco-site-loss" ], [ "O94915-1", "1170", "M", "T", "4", "48566052", "A", "G", "1", "689", "0.1", "tcga", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "O94915", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NLM->NLT). In dbSNP: rs995701886.", "", "1", "", "yes", "1168", "NLM", "NLT", "n-glyco-sequon-gain" ], [ "Q96JQ2-1", "689", "S", "N", "14", "95669620", "C", "T", "1", "1144", "0.1", "tcga", "1612", "DOID:1612 / breast cancer", "protein_xref_biomuta", "Q96JQ2", "Somatic mutation passed 1 out of 6 filters: num. of cancers (6). In dbSNP: rs1460560076.", "", "1", "", "no", "689", "S", "N", "o-glyco-site-loss" ], [ "Q96HA1-1", "1122", "T", "A", "7", "72413896", "A", "G", "5", "1044", "0.5", "tcga", "10534", "DOID:10534 / stomach cancer", "protein_xref_biomuta", "Q96HA1", "Somatic mutation passed 1 out of 6 filters: num. of cancers (15).", "", "1", "", "yes", "1122", "T", "A", "o-glyco-site-loss" ], [ "Q6UXN2-1", "53", "S", "F", "6", "41196546", "C", "T", "2", "820", "0.2", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "Q6UXN2", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "", "1", "", "yes", "53", "S", "F", "o-glyco-site-loss" ], [ "O15156-1", "388", "K", "N", "1", "154988705", "G", "C", "3", "1484", "0.2", "tcga", "11054", "DOID:11054 / urinary bladder cancer", "protein_xref_biomuta", "O15156", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "", "1", "", "no", "388", "K", "N", "o-glyco-site-loss" ], [ "O75445-1", "1905", "S", "F", "1", "216246501", "G", "A", "1", "103", "1.0", "icgc", "11054", "DOID:11054 / urinary bladder cancer", "protein_xref_biomuta", "O75445", "Somatic mutation passed 2 out of 6 filters: patient freq. (1.0%); n-glyco-sequon-loss (NDS->NDF).", "", "1", "", "yes", "1903", "NDS", "NDF", "n-glyco-sequon-loss" ], [ "O75445-1", "1905", "S", "F", "1", "216246501", "G", "A", "1", "103", "1.0", "icgc", "11054", "DOID:11054 / urinary bladder cancer", "protein_xref_biomuta", "O75445", "Somatic mutation passed 2 out of 6 filters: patient freq. (1.0%); n-glyco-sequon-loss (NDS->NDF).", "", "1", "", "yes", "1905", "S", "F", "o-glyco-site-loss" ], [ "Q9BQF6-1", "713", "Y", "H", "3", "101060593", "A", "G", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q9BQF6", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "713", "Y", "H", "o-glyco-site-loss" ], [ "Q8NA82-1", "402", "S", "L", "17", "60814024", "G", "A", "1", "678", "0.1", "tcga", "1319", "DOID:1319 / brain cancer", "protein_xref_biomuta", "Q8NA82", "Somatic mutation passed 1 out of 6 filters: num. of cancers (4). In dbSNP: rs1304517356.", "", "1", "", "no", "402", "S", "L", "o-glyco-site-loss" ], [ "Q92794-1", "726", "D", "N", "8", "41801318", "C", "T", "1", "820", "0.1", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "Q92794", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (DIT->NIT).", "", "1", "", "yes", "726", "DIT", "NIT", "n-glyco-sequon-gain" ], [ "P26358-1", "161", "S", "G", "19", "10288008", "T", "C", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "P26358", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "161", "S", "G", "o-glyco-site-loss" ], [ "P61073-1", "351", "S", "Y", "2", "136872446", "G", "T", "1", "38", "2.6", "icgc", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "P61073", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.6%).", "", "1", "", "yes", "351", "S", "Y", "o-glyco-site-loss" ], [ "Q5VT52-1", "561", "T", "P", "1", "150443105", "A", "C", "1", "689", "0.1", "tcga", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "Q5VT52", "Somatic mutation passed 1 out of 6 filters: o-glyco-site-loss (T->P).", "", "1", "", "yes", "561", "T", "P", "o-glyco-site-loss" ], [ "Q9Y2W1-1", "810", "D", "N", "1", "36766611", "G", "A", "1", "1144", "0.1", "tcga", "1612", "DOID:1612 / breast cancer", "protein_xref_biomuta", "Q9Y2W1", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (DKS->NKS).", "", "1", "", "yes", "810", "DKS", "NKS", "n-glyco-sequon-gain" ], [ "Q9NTG1-1", "925", "S", "L", "22", "46656446", "G", "A", "1", "558", "0.2", "tcga", "363", "DOID:363 / uterine cancer", "protein_xref_biomuta", "Q9NTG1", "Somatic mutation passed 2 out of 6 filters: num. of cancers (3); n-glyco-sequon-loss (NTS->NTL). In dbSNP: rs895883337.", "", "1", "", "yes", "923", "NTS", "NTL", "n-glyco-sequon-loss" ], [ "Q9NTG1-1", "925", "S", "L", "22", "46656446", "G", "A", "1", "558", "0.2", "tcga", "363", "DOID:363 / uterine cancer", "protein_xref_biomuta", "Q9NTG1", "Somatic mutation passed 2 out of 6 filters: num. of cancers (3); n-glyco-sequon-loss (NTS->NTL). In dbSNP: rs895883337.", "", "1", "", "yes", "925", "S", "L", "o-glyco-site-loss" ], [ "Q15063-1", "56", "Y", "N", "13", "38171373", "A", "T", "1", "1044", "0.1", "tcga", "10534", "DOID:10534 / stomach cancer", "protein_xref_biomuta", "Q15063", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (YFS->NFS).", "", "1", "", "yes", "56", "YFS", "NFS", "n-glyco-sequon-gain" ], [ "Q15063-1", "56", "Y", "N", "13", "38171373", "A", "T", "1", "1044", "0.1", "tcga", "10534", "DOID:10534 / stomach cancer", "protein_xref_biomuta", "Q15063", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (YFS->NFS).", "", "1", "", "yes", "56", "Y", "N", "o-glyco-site-loss" ], [ "Q6VB84-1", "183", "S", "N", "9", "70918415", "G", "A", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q6VB84", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "183", "S", "N", "o-glyco-site-loss" ], [ "P13569-1", "464", "K", "N", "7", "117188877", "G", "T", "1", "125", "0.8", "icgc", "2531", "DOID:2531 / hematologic cancer", "protein_xref_biomuta", "P13569", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (KTS->NTS).", "", "1", "", "yes", "464", "KTS", "NTS", "n-glyco-sequon-gain" ], [ "P13569-1", "464", "K", "N", "7", "117188877", "G", "T", "1", "125", "0.8", "icgc", "2531", "DOID:2531 / hematologic cancer", "protein_xref_biomuta", "P13569", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (KTS->NTS).", "", "1", "", "yes", "464", "K", "N", "o-glyco-site-loss" ], [ "Q8WZ42-1", "3602", "T", "N", "2", "179606204", "G", "T", "1", "678", "0.1", "tcga", "1319", "DOID:1319 / brain cancer", "protein_xref_biomuta", "Q8WZ42", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (TET->NET). In dbSNP: rs727503661.", "", "1", "", "yes", "3602", "TET", "NET", "n-glyco-sequon-gain" ], [ "Q8WZ42-1", "3602", "T", "N", "2", "179606204", "G", "T", "1", "678", "0.1", "tcga", "1319", "DOID:1319 / brain cancer", "protein_xref_biomuta", "Q8WZ42", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (TET->NET). In dbSNP: rs727503661.", "", "1", "", "yes", "3602", "T", "N", "o-glyco-site-loss" ], [ "O75976-1", "980", "S", "F", "17", "28776636", "C", "T", "1", "820", "0.1", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "O75976", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NVS->NVF).", "", "1", "", "yes", "978", "NVS", "NVF", "n-glyco-sequon-loss" ], [ "O75976-1", "980", "S", "F", "17", "28776636", "C", "T", "1", "820", "0.1", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "O75976", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NVS->NVF).", "", "1", "", "yes", "980", "S", "F", "o-glyco-site-loss" ], [ "Q8WZ42-1", "14868", "T", "A", "2", "179478485", "T", "C", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q8WZ42", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "yes", "14868", "T", "A", "o-glyco-site-loss" ], [ "P19827-1", "653", "T", "N", "3", "52822035", "C", "A", "1", "655", "0.2", "tcga", "263", "DOID:263 / kidney cancer", "protein_xref_biomuta", "P19827", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (THS->NHS); o-glyco-site-loss (T->N).", "", "1", "", "yes", "653", "THS", "NHS", "n-glyco-sequon-gain" ], [ "P19827-1", "653", "T", "N", "3", "52822035", "C", "A", "1", "655", "0.2", "tcga", "263", "DOID:263 / kidney cancer", "protein_xref_biomuta", "P19827", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (THS->NHS); o-glyco-site-loss (T->N).", "", "1", "", "yes", "653", "T", "N", "o-glyco-site-loss" ], [ "Q8WY21-1", "1140", "D", "N", "10", "108337267", "C", "T", "1", "412", "0.2", "tcga", "3571", "DOID:3571 / liver cancer", "protein_xref_biomuta", "Q8WY21", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (DSS->NSS).", "", "1", "", "yes", "1140", "DSS", "NSS", "n-glyco-sequon-gain" ], [ "Q9UND3-1", "264", "K", "R", "16", "15045620", "A", "G", "1", "103", "1.0", "icgc", "11054", "DOID:11054 / urinary bladder cancer", "protein_xref_biomuta", "Q9UND3", "Somatic mutation passed 1 out of 6 filters: patient freq. (1.0%). In dbSNP: rs1383302224.", "", "1", "", "no", "264", "K", "R", "o-glyco-site-loss" ], [ "P51153-1", "34", "N", "K", "1", "153958611", "G", "T", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "P51153", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "34", "NNT", "KNT", "n-glyco-sequon-loss" ], [ "Q9NRD9-1", "1174", "D", "N", "15", "45445673", "G", "A", "1", "980", "0.1", "tcga", "11934", "DOID:11934 / head and neck cancer", "protein_xref_biomuta", "Q9NRD9", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (DGS->NGS).", "", "1", "", "yes", "1174", "DGS", "NGS", "n-glyco-sequon-gain" ], [ "Q9BY12-1", "1159", "S", "N", "15", "76673948", "C", "T", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q9BY12", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "1159", "S", "N", "o-glyco-site-loss" ], [ "Q9BXP8-1", "232", "K", "N", "1", "176526154", "A", "C", "1", "456", "0.2", "tcga", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "Q9BXP8", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (KKS->NKS).", "", "1", "", "yes", "232", "KKS", "NKS", "n-glyco-sequon-gain" ], [ "Q9BXP8-1", "232", "K", "N", "1", "176526154", "A", "C", "1", "456", "0.2", "tcga", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "Q9BXP8", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (KKS->NKS).", "", "1", "", "yes", "232", "K", "N", "o-glyco-site-loss" ], [ "O15417-1", "1033", "S", "R", "7", "5413818", "T", "G", "2", "50", "4.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "O15417", "Somatic mutation passed 1 out of 6 filters: patient freq. (4.0%).", "", "1", "", "yes", "1033", "S", "R", "o-glyco-site-loss" ], [ "A6NFE2-1", "52", "K", "N", "12", "27625730", "A", "C", "1", "94", "1.1", "icgc", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "A6NFE2", "Somatic mutation passed 1 out of 6 filters: patient freq. (1.1%).", "", "1", "", "no", "52", "K", "N", "o-glyco-site-loss" ], [ "Q6HA08-1", "317", "S", "*", "2", "96789935", "G", "T", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q6HA08", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "317", "S", "*", "o-glyco-site-loss" ], [ "Q9HC56-1", "266", "P", "S", "13", "67801777", "G", "A", "1", "1514", "0.1", "tcga", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "Q9HC56", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NAP->NAS).", "", "1", "", "yes", "264", "NAP", "NAS", "n-glyco-sequon-gain" ], [ "P51884-1", "44", "P", "T", "12", "91502627", "G", "T", "1", "1514", "0.1", "tcga", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "P51884", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NCP->NCT).", "", "1", "", "yes", "42", "NCP", "NCT", "n-glyco-sequon-gain" ], [ "Q86VQ0-1", "223", "K", "N", "6", "80222980", "C", "A", "1", "162", "0.6", "tcga", "9256", "DOID:9256 / colorectal cancer", "protein_xref_biomuta", "Q86VQ0", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3). In dbSNP: rs1185420800.", "", "1", "", "no", "223", "K", "N", "o-glyco-site-loss" ], [ "Q96E39-1", "314", "S", "G", "1", "89448570", "T", "C", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q96E39", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "314", "S", "G", "o-glyco-site-loss" ], [ "Q8WYP5-1", "375", "S", "L", "1", "247063765", "G", "A", "1", "820", "0.1", "tcga", "4159", "DOID:4159 / skin cancer", "protein_xref_biomuta", "Q8WYP5", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "", "1", "", "no", "375", "S", "L", "o-glyco-site-loss" ], [ "Q9Y2I6-1", "495", "K", "Q", "20", "25471989", "T", "G", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q9Y2I6", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "495", "K", "Q", "o-glyco-site-loss" ], [ "Q08116-1", "143", "S", "*", "1", "192547499", "C", "A", "1", "50", "2.0", "icgc", "1781", "DOID:1781 / thyroid cancer", "protein_xref_biomuta", "Q08116", "Somatic mutation passed 1 out of 6 filters: patient freq. (2.0%).", "", "1", "", "no", "143", "S", "*", "o-glyco-site-loss" ], [ "Q3SY84-1", "194", "T", "M", "12", "52943888", "G", "A", "1", "558", "0.2", "tcga", "363", "DOID:363 / uterine cancer", "protein_xref_biomuta", "Q3SY84", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3). In dbSNP: rs370058724.", "", "1", "", "no", "194", "T", "M", "o-glyco-site-loss" ], [ "Q9NYM4-1", "39", "S", "W", "11", "94134298", "G", "C", "1", "66", "1.5", "icgc", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "Q9NYM4", "Somatic mutation passed 2 out of 6 filters: patient freq. (1.5%); n-glyco-sequon-loss (NAS->NAW).", "", "1", "", "yes", "37", "NAS", "NAW", "n-glyco-sequon-loss" ], [ "Q9NYM4-1", "39", "S", "W", "11", "94134298", "G", "C", "1", "66", "1.5", "icgc", "1324", "DOID:1324 / lung cancer", "protein_xref_biomuta", "Q9NYM4", "Somatic mutation passed 2 out of 6 filters: patient freq. (1.5%); n-glyco-sequon-loss (NAS->NAW).", "", "1", "", "yes", "39", "S", "W", "o-glyco-site-loss" ], [ "P00505-1", "409", "S", "F", "16", "58742142", "G", "A", "1", "103", "1.0", "icgc", "11054", "DOID:11054 / urinary bladder cancer", "protein_xref_biomuta", "P00505", "Somatic mutation passed 1 out of 6 filters: patient freq. (1.0%).", "", "1", "", "no", "409", "S", "F", "o-glyco-site-loss" ] ] }, "readme": "Name\n - Human Cancer Mutation LOG and GOG effect\n\nVersion\n - 1.8.25\n\nCreated on\n - 2020-06-25T13:28:50.371628\n\nModified on\n - 2020-06-25T13:44:35.587930\n\nCreated by\n - [jeetvora@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Output Subdomain\n Name: human_protein_mutation_cancer_glycoeffect.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_mutation_cancer_glycoeffect.csv\n Name: human_protein_mutation_cancer_glycoeffect.stat.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_mutation_cancer_glycoeffect.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/human_protein_mutation_cancer_glycoeffect.csv" }