{
    "bcoid": "GLY_000437",
    "title": "SARS-CoV1 Protein Names (NCBI RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Names (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] ...",
    "filename": "sarscov1_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Protein Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0C6X7-1...",
                "NP_828849.2..."
            ],
            [
                "P0C6X7-1...",
                "NP_828849.2..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "P0C6X7-1",
                "NP_828849.2",
                "ORF1ab polyprotein"
            ],
            [
                "P0C6X7-1",
                "NP_828849.2",
                "polyprotein pp1ab; replicase 1AB"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Names (NCBI RefSeq)\n\nVersion\n   - 1.8.25\n\nCreated on\n  - 2020-03-15T13:32:44.009025\n\nModified on\n   - 2020-04-09T18:47:04.482704\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Names (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_viral.gpff\n      URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_viral.gpff\n      Name: sarscov1_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_xref_refseq.csv\n   Output Subdomain\n      Name: sarscov1_protein_proteinnames_refseq.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_proteinnames_refseq.csv\n      Name: sarscov1_protein_proteinnames_refseq.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov1_protein_proteinnames_refseq.csv"
}