{ "bcoid": "GLY_000284", "title": "Glycan Enzyme", "description": "The dataset provides information on biosynthetic enzymes (UniProtKB Ac.) associated to the glycan structures ...", "filename": "glycan_enzyme.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Biosynthetic Enzyme", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00012RZ...", "N-glycan_a-D..." ], [ "G00012RZ...", "N-glycan_a-D..." ] ], "headers": [ "glytoucan_ac...", "residue_name..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "residue_name" }, { "type": "string", "label": "residue_id" }, { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_name" }, { "type": "string", "label": "gene_id" }, { "type": "string", "label": "parent_residue_id" }, { "type": "string", "label": "enzyme_type" }, { "type": "string", "label": "species" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "G00012RZ", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_a-D-Manp_1", "N1", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_a-D-Manp_4", "N4", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_a-D-Manp_4", "N4", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_a-L-Fucp_15", "N15", "Q9BYC5-1", "FUT8", "2530", "NA", "GT", "human", "Alpha-(1,6)-fucosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_a-L-Fucp_15", "N15", "Q9WTS2-1", "Fut8", "53618", "NA", "GT", "mouse", "Alpha-(1,6)-fucosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q8BML3-1", "Glt28d2", "320302", "NA", "GT", "mouse", "N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q96F25-1", "ALG14", "199857", "NA", "GT", "human", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D081-1", "Alg14", "66789", "NA", "GT", "mouse", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D8C3-1", "Alg13", "67574", "NA", "GT", "mouse", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9NP73-1", "ALG13", "79868", "NA", "GT", "human", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-Manp_C", "NC", "Q921Q3-1", "Alg1", "208211", "NB", "GT", "mouse", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_b-D-Manp_C", "NC", "Q9BT22-1", "ALG1", "56052", "NB", "GT", "human", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_D-GlcNAc_A", "NA", "P42867-1", "Dpagt1", "13478", "0", "GT", "mouse", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00012RZ", "N-glycan_core_D-GlcNAc_A", "NA", "Q9H3H5-1", "DPAGT1", "1798", "0", "GT", "human", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-D-Manp_1", "N1", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-D-Manp_4", "N4", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-D-Manp_4", "N4", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-L-Fucp_15", "N15", "Q9BYC5-1", "FUT8", "2530", "NA", "GT", "human", "Alpha-(1,6)-fucosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_a-L-Fucp_15", "N15", "Q9WTS2-1", "Fut8", "53618", "NA", "GT", "mouse", "Alpha-(1,6)-fucosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "O60512-1", "B4GALT3", "8703", "N2", "GT", "human", "Beta-1,4-galactosyltransferase 3", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "O60909-1", "B4GALT2", "8704", "N2", "GT", "human", "Beta-1,4-galactosyltransferase 2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "P15291-1", "B4GALT1", "2683", "N2", "GT", "human", "Beta-1,4-galactosyltransferase 1", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "P15535-1", "B4galt1", "14595", "N2", "GT", "mouse", "Beta-1,4-galactosyltransferase 1", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "Q91YY2-1", "B4galt3", "57370", "N2", "GT", "mouse", "Beta-1,4-galactosyltransferase 3", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-Galp_3", "N3", "Q9Z2Y2-1", "B4galt2", "53418", "N2", "GT", "mouse", "Beta-1,4-galactosyltransferase 2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-GlcpNAc_2", "N2", "P26572-1", "MGAT1", "4245", "N1", "GT", "human", "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-GlcpNAc_2", "N2", "P27808-1", "Mgat1", "17308", "N1", "GT", "mouse", "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-GlcpNAc_5", "N5", "Q10469-1", "MGAT2", "4247", "N4", "GT", "human", "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_b-D-GlcpNAc_5", "N5", "Q921V5-1", "Mgat2", "217664", "N4", "GT", "mouse", "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q8BML3-1", "Glt28d2", "320302", "NA", "GT", "mouse", "N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q96F25-1", "ALG14", "199857", "NA", "GT", "human", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D081-1", "Alg14", "66789", "NA", "GT", "mouse", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D8C3-1", "Alg13", "67574", "NA", "GT", "mouse", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9NP73-1", "ALG13", "79868", "NA", "GT", "human", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-Manp_C", "NC", "Q921Q3-1", "Alg1", "208211", "NB", "GT", "mouse", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_b-D-Manp_C", "NC", "Q9BT22-1", "ALG1", "56052", "NB", "GT", "human", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_D-GlcNAc_A", "NA", "P42867-1", "Dpagt1", "13478", "0", "GT", "mouse", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00025YC", "N-glycan_core_D-GlcNAc_A", "NA", "Q9H3H5-1", "DPAGT1", "1798", "0", "GT", "human", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_a-D-Manp_1", "N1", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_a-D-Manp_4", "N4", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_a-D-Manp_4", "N4", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q8BML3-1", "Glt28d2", "320302", "NA", "GT", "mouse", "N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q96F25-1", "ALG14", "199857", "NA", "GT", "human", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D081-1", "Alg14", "66789", "NA", "GT", "mouse", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D8C3-1", "Alg13", "67574", "NA", "GT", "mouse", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9NP73-1", "ALG13", "79868", "NA", "GT", "human", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-Manp_C", "NC", "Q921Q3-1", "Alg1", "208211", "NB", "GT", "mouse", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_b-D-Manp_C", "NC", "Q9BT22-1", "ALG1", "56052", "NB", "GT", "human", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_D-GlcNAc_A", "NA", "P42867-1", "Dpagt1", "13478", "0", "GT", "mouse", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00026MO", "N-glycan_core_D-GlcNAc_A", "NA", "Q9H3H5-1", "DPAGT1", "1798", "0", "GT", "human", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_19", "N19", "Q8K2A8-1", "Alg3", "208624", "N4", "GT", "mouse", "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_19", "N19", "Q92685-1", "ALG3", "10195", "N4", "GT", "human", "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_1", "N1", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_20", "N20", "Q8K2A8-1", "Alg3", "208624", "N4", "GT", "mouse", "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_20", "N20", "Q92685-1", "ALG3", "10195", "N4", "GT", "human", "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_4", "N4", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_a-D-Manp_4", "N4", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q8BML3-1", "Glt28d2", "320302", "NA", "GT", "mouse", "N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q96F25-1", "ALG14", "199857", "NA", "GT", "human", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D081-1", "Alg14", "66789", "NA", "GT", "mouse", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D8C3-1", "Alg13", "67574", "NA", "GT", "mouse", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9NP73-1", "ALG13", "79868", "NA", "GT", "human", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-Manp_C", "NC", "Q921Q3-1", "Alg1", "208211", "NB", "GT", "mouse", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_b-D-Manp_C", "NC", "Q9BT22-1", "ALG1", "56052", "NB", "GT", "human", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_D-GlcNAc_A", "NA", "P42867-1", "Dpagt1", "13478", "0", "GT", "mouse", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00028MO", "N-glycan_core_D-GlcNAc_A", "NA", "Q9H3H5-1", "DPAGT1", "1798", "0", "GT", "human", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_a-D-Manp_1", "N1", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_a-D-Manp_4", "N4", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_a-D-Manp_4", "N4", "Q9H553-1", "ALG2", "85365", "NC", "GT", "human", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q8BML3-1", "Glt28d2", "320302", "NA", "GT", "mouse", "N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q96F25-1", "ALG14", "199857", "NA", "GT", "human", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D081-1", "Alg14", "66789", "NA", "GT", "mouse", "UDP-N-acetylglucosamine transferase subunit ALG14 homolog", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9D8C3-1", "Alg13", "67574", "NA", "GT", "mouse", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-GlcpNAc_B", "NB", "Q9NP73-1", "ALG13", "79868", "NA", "GT", "human", "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-Manp_C", "NC", "Q921Q3-1", "Alg1", "208211", "NB", "GT", "mouse", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_b-D-Manp_C", "NC", "Q9BT22-1", "ALG1", "56052", "NB", "GT", "human", "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_D-GlcNAc_A", "NA", "P42867-1", "Dpagt1", "13478", "0", "GT", "mouse", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00029MO", "N-glycan_core_D-GlcNAc_A", "NA", "Q9H3H5-1", "DPAGT1", "1798", "0", "GT", "human", "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "glycan_xref_glygen_ds", "GLY_000284" ], [ "G00030MO", "N-glycan_a-D-Manp_1", "N1", "Q9DBE8-1", "Alg2", "56737", "NC", "GT", "mouse", "Alpha-1,3/1,6-mannosyltransferase ALG2", "glycan_xref_glygen_ds", "GLY_000284" ] ] }, "readme": "Name\n - Glycan Enzyme\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-11-13T13:19:08.883378\n\nModified on\n - 2020-08-07T10:47:48.909998\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Will York [will@ccrc.uga.edu], Allison Nairn [avnairn@uga.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on biosynthetic enzymes (UniProtKB Ac.) associated to the glycan structures (GlyTouCan Accessions). The enzymes listed are human or mouse proteins that are associated with the canonical monosaccharides. The association of a glycan structure to the canonical monosaccharides are based on the GlycO tree model. The glycans listed in the database may or may not have a human (TaxID:9606) or mouse (TaxID:10090) species annotation from the source (GlyTouCan or UniCarbKB) database. Please note that a human or mouse biosynthetic enzyme association should not be considered as a human or mouse species annotation for that glycan.\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Enzyme\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the source authors and a python script was used to extract columns: glytoucan_ac,residue_name,residue_id,uniprot,gene_name,gene_id,parent_residue_id,type,species. The script also assigned protein recommended name based on the UniProtKB accession. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: annotated_glycans.csv\n URI: https://data.glygen.org/ln2wwwdata/source/annotated_glycans.csv\n Name: human_protein_recnames.csv\n URI: https://data.glygen.org/ln2wwwdata/source/human_protein_recnames.csv\n Name: mouse_protein_recnames.csv\n URI: https://data.glygen.org/ln2wwwdata/source/mouse_protein_recnames.csv\n Output Subdomain\n Name: glycan_enzyme.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_enzyme.csv\n Name: glycan_enzyme.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_enzyme.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/glycan_enzyme.csv" }