{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TCY9-1...", "SP1 is a tra..." ], [ "Q7KZI7-1...", "High-Molecul..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q8TCY9-1", "SP1 is a transcriptional regulator of URG-4/URGCP gene in hepatocytes.", "Molecular and cellular biochemistry", "2016 Dec", "Tokay E, Kockar F", "protein_xref_pubmed", "27766531", "protein_xref_refseq", "NP_001071131.1" ], [ "Q7KZI7-1", "High-Molecular-Weight Hyaluronan Is a Hippo Pathway Ligand Directing Cell Density-Dependent Growth Inhibition via PAR1b.", "Developmental cell", "2019 May 20", "Ooki T, Murata-Kamiya N, Takahashi-Kanemitsu A, Wu W, Hatakeyama M", "protein_xref_pubmed", "31080060", "protein_xref_refseq", "NP_001034558.2" ], [ "O14681-1", "Reduced expression of EI24 confers resistance to gefitinib through IGF-1R signaling in PC9 NSCLC cells.", "Lung cancer (Amsterdam, Netherlands)", "2015 Nov", "Choi JM, Jang JY, Choi YR, Kim HR, Cho BC, Lee HW", "protein_xref_pubmed", "26342551", "protein_xref_refseq", "NP_001277064.1" ], [ "P78352-1", "Ligand-dependent intra- and interdomain motions in the PDZ12 tandem regulate binding interfaces in postsynaptic density protein-95.", "FEBS letters", "2020 Mar", "Kovacs B, Zajacz-Epresi N, Gaspari Z", "protein_xref_pubmed", "31562775", "protein_xref_refseq", "NP_001122299.1" ], [ "Q9Y3L5-1", "Combined high-resolution array-based comparative genomic hybridization and expression profiling of ETV6/RUNX1-positive acute lymphoblastic leukemias reveal a high incidence of cryptic Xq duplications and identify several putative target genes within the commonly gained region.", "Leukemia", "2007 Oct", "Lilljebjorn H, Heidenblad M, Nilsson B, Lassen C, Horvat A, Heldrup J, Behrendtz M, Johansson B, Andersson A, Fioretos T", "protein_xref_pubmed", "17690704", "protein_xref_refseq", "NP_001258115.1" ], [ "P16619-1", "Differential recognition and scavenging of native and truncated macrophage-derived chemokine (macrophage-derived chemokine/CC chemokine ligand 22) by the D6 decoy receptor.", "Journal of immunology (Baltimore, Md. : 1950)", "2004 Apr 15", "Bonecchi R, Locati M, Galliera E, Vulcano M, Sironi M, Fra AM, Gobbi M, Vecchi A, Sozzani S, Haribabu B, Van Damme J, Mantovani A", "protein_xref_pubmed", "15067078", "protein_xref_refseq", "NP_001001437.2" ], [ "Q9C0K7-1", "ILPIP, a novel anti-apoptotic protein that enhances XIAP-mediated activation of JNK1 and protection against apoptosis.", "The Journal of biological chemistry", "2002 Aug 23", "Sanna MG, da Silva Correia J, Luo Y, Chuang B, Paulson LM, Nguyen B, Deveraux QL, Ulevitch RJ", "protein_xref_pubmed", "12048196", "protein_xref_refseq", "NP_001193793.1" ], [ "Q12951-1", "Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12).", "Genomics", "1995 Dec 10", "Larsson C, Hellqvist M, Pierrou S, White I, Enerback S, Carlsson P", "protein_xref_pubmed", "8825632", "protein_xref_refseq", "NP_036320.2" ], [ "P58417-1", "Structure and evolution of neurexophilin.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "1996 Jul 15", "Petrenko AG, Ullrich B, Missler M, Krasnoperov V, Rosahl TW, Sudhof TC", "protein_xref_pubmed", "8699246", "protein_xref_refseq", "NP_689958.1" ], [ "Q9NYJ8-1", "Associations between TAB2 Gene Polymorphisms and Epithelial Ovarian Cancer in a Chinese Population.", "Disease markers", "2019", "Huang X, Shen C, Zhang Y, Li Q, Li K, Wang Y, Song Y, Su M, Zhou B, Wang W", "protein_xref_pubmed", "31485280", "protein_xref_refseq", "NP_001278963.1" ], [ "Q5ZPR3-1", "Characterization of mouse and human B7-H3 genes.", "Journal of immunology (Baltimore, Md. : 1950)", "2002 Jun 15", "Sun M, Richards S, Prasad DV, Mai XM, Rudensky A, Dong C", "protein_xref_pubmed", "12055244", "protein_xref_refseq", "NP_001019907.1" ], [ "Q9ULJ6-1", "Upregulated circZMIZ1 promotes the proliferation of prostate cancer cells and is a valuable marker in plasma.", "Neoplasma", "2020 Jan", "Jiang H, Lv DJ, Song XL, Wang C, Yu YZ, Zhao SC", "protein_xref_pubmed", "31686520", "protein_xref_refseq", "NP_065071.1" ], [ "Q8N1I0-1", "Up-regulated cytotrophoblast DOCK4 contributes to over-invasion in placenta accreta spectrum.", "Proceedings of the National Academy of Sciences of the United States of America", "2020 Jul 7", "McNally L, Zhou Y, Robinson JF, Zhao G, Chen LM, Chen H, Kim MY, Kapidzic M, Gormley M, Hannibal R, Fisher SJ", "protein_xref_pubmed", "32576693", "protein_xref_refseq", "NP_055520.3" ], [ "P04280-1", "Length polymorphisms in human proline-rich protein genes generated by intragenic unequal crossing over.", "Genetics", "1988 Sep", "Lyons KM, Stein JH, Smithies O", "protein_xref_pubmed", "2851479", "protein_xref_refseq", "NP_005030.2" ], [ "P11473-1", "A single receptor identical with that from intestine/T47D cells mediates the action of 1,25-dihydroxyvitamin D-3 in HL-60 cells.", "Biochimica et biophysica acta", "1992 Aug 17", "Goto H, Chen KS, Prahl JM, DeLuca HF", "protein_xref_pubmed", "1324736", "protein_xref_refseq", "NP_000367.1" ], [ "Q96DM3-1", "Systematic Analysis of Human Cells Lacking ATG8 Proteins Uncovers Roles for GABARAPs and the CCZ1/MON1 Regulator C18orf8/RMC1 in Macroautophagic and Selective Autophagic Flux.", "Molecular and cellular biology", "2018 Jan 1", "Vaites LP, Paulo JA, Huttlin EL, Harper JW", "protein_xref_pubmed", "29038162", "protein_xref_refseq", "NP_001305636.1" ], [ "Q8N1G0-1", "ZNF687 mutations are frequently found in pagetic patients from South Italy: implication in the pathogenesis of Paget's disease of bone.", "Clinical genetics", "2018 Jun", "Divisato G, Scotto di Carlo F, Petrillo N, Esposito T, Gianfrancesco F", "protein_xref_pubmed", "29493781", "protein_xref_refseq", "NP_001291692.1" ], [ "Q9H714-5", "A four-gene methylation marker panel as triage test in high-risk human papillomavirus positive patients.", "International journal of cancer", "2012 Apr 15", "Eijsink JJ, Lendvai A, Deregowski V, Klip HG, Verpooten G, Dehaspe L, de Bock GH, Hollema H, van Criekinge W, Schuuring E, van der Zee AG, Wisman GB", "protein_xref_pubmed", "21796628", "protein_xref_refseq", "NP_001273690.1" ], [ "P11309-1", "PIM kinases alter mitochondrial dynamics and chemosensitivity in lung cancer.", "Oncogene", "2020 Mar", "Chauhan SS, Toth RK, Jensen CC, Casillas AL, Kashatus DF, Warfel NA", "protein_xref_pubmed", "31992853", "protein_xref_refseq", "NP_001230115.1" ], [ "Q92743-1", "Development of a therapeutic anti-HtrA1 antibody and the identification of DKK3 as a pharmacodynamic biomarker in geographic atrophy.", "Proceedings of the National Academy of Sciences of the United States of America", "2020 May 5", "Tom I, Pham VC, Katschke KJ Jr, Li W, Liang WC, Gutierrez J, Ah Young A, Figueroa I, Eshghi ST, Lee CV, Kanodia J, Snipas SJ, Salvesen GS, Lai P, Honigberg L, van Lookeren Campagne M, Kirchhofer D, Baruch A, Lill JR", "protein_xref_pubmed", "32345717", "protein_xref_refseq", "NP_002766.1" ], [ "Q8WW38-1", "Transcriptional cofactors of the FOG family interact with GATA proteins by means of multiple zinc fingers.", "The EMBO journal", "1999 May 17", "Fox AH, Liew C, Holmes M, Kowalski K, Mackay J, Crossley M", "protein_xref_pubmed", "10329627", "protein_xref_refseq", "NP_036214.2" ], [ "Q9UPM8-1", "Association between Rare Variants in AP4E1, a Component of Intracellular Trafficking, and Persistent Stuttering.", "American journal of human genetics", "2015 Nov 5", "Raza MH, Mattera R, Morell R, Sainz E, Rahn R, Gutierrez J, Paris E, Root J, Solomon B, Brewer C, Basra MA, Khan S, Riazuddin S, Braun A, Bonifacino JS, Drayna D", "protein_xref_pubmed", "26544806", "protein_xref_refseq", "NP_001239056.1" ], [ "Q9BRZ2-1", "The ubiquitin ligase TRIM56 regulates innate immune responses to intracellular double-stranded DNA.", "Immunity", "2010 Nov 24", "Tsuchida T, Zou J, Saitoh T, Kumar H, Abe T, Matsuura Y, Kawai T, Akira S", "protein_xref_pubmed", "21074459", "protein_xref_refseq", "NP_112223.1" ], [ "A8K4G0-1", "Lipopolysaccharide-Induced CD300b Receptor Binding to Toll-like Receptor 4 Alters Signaling to Drive Cytokine Responses that Enhance Septic Shock.", "Immunity", "2016 Jun 21", "Voss OH, Murakami Y, Pena MY, Lee HN, Tian L, Margulies DH, Street JM, Yuen PS, Qi CF, Krzewski K, Coligan JE", "protein_xref_pubmed", "27261276", "protein_xref_refseq", "NP_777552.3" ], [ "Q8TD16-1", "The Genotypic and Phenotypic Spectrum of BICD2 Variants in Spinal Muscular Atrophy.", "Annals of neurology", "2020 Apr", "Koboldt DC, Waldrop MA, Wilson RK, Flanigan KM", "protein_xref_pubmed", "32057122", "protein_xref_refseq", "NP_001003800.1" ], [ "P59534-1", "Evaluation of the bitterness of green tea catechins by a cell-based assay with the human bitter taste receptor hTAS2R39.", "Biochemical and biophysical research communications", "2011 Feb 25", "Narukawa M, Noga C, Ueno Y, Sato T, Misaka T, Watanabe T", "protein_xref_pubmed", "21272567", "protein_xref_refseq", "NP_795362.2" ], [ "Q14145-1", "The 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Lupo G, Bulfone A, Andreazzoli M, Mariani M, Fougerousse F, Consalez GG, Borsani G, Beckmann JS, Barsacchi G, Ballabio A, Banfi S", "protein_xref_pubmed", "10485894", "protein_xref_refseq", "NP_001106175.1" ], [ "Q14164-1", "Porcine Deltacoronavirus Accessory Protein NS7a Antagonizes IFN-beta Production by Competing With TRAF3 and IRF3 for Binding to IKKepsilon.", "Frontiers in cellular and infection microbiology", "2020", "Fang P, Fang L, Xia S, Ren J, Zhang J, Bai D, Zhou Y, Peng G, Zhao S, Xiao S", "protein_xref_pubmed", "32656094", "protein_xref_refseq", "NP_001180250.1" ], [ "Q6PI48-1", "An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations.", "Nature communications", "2018 Mar 22", "Liu X, Salokas K, Tamene F, Jiu Y, Weldatsadik RG, Ohman T, Varjosalo M", "protein_xref_pubmed", "29568061", "protein_xref_refseq", "NP_060592.2" ], [ "Q6P1N0-1", "The CC2D1A, a member of a new gene family with C2 domains, is involved in autosomal recessive non-syndromic mental retardation.", "Journal of medical genetics", "2006 Mar", "Basel-Vanagaite L, Attia R, Yahav M, Ferland RJ, Anteki L, Walsh CA, Olender T, Straussberg R, Magal N, Taub E, Drasinover V, Alkelai A, Bercovich D, Rechavi G, Simon AJ, Shohat M", "protein_xref_pubmed", "16033914", "protein_xref_refseq", "NP_060191.3" ], [ "Q8WTX7-1", "Transmembrane 4 L Six Family Member 5 Senses Arginine for mTORC1 Signaling.", "Cell metabolism", "2019 Jun 4", "Jung JW, Macalino SJY, Cui M, Kim JE, Kim HJ, Song DG, Nam SH, Kim S, Choi S, Lee JW", "protein_xref_pubmed", "30956113", "protein_xref_refseq", "NP_001032755.1" ], [ "A8K8P3-1", "SFI1 promotes centriole duplication by recruiting USP9X to stabilize the microcephaly protein STIL.", "The Journal of cell biology", "2019 Jul 1", "Kodani A, Moyer T, Chen A, Holland A, Walsh CA, Reiter JF", "protein_xref_pubmed", "31197030", "protein_xref_refseq", "NP_001007468.1" ], [ "Q9NS25-1", "Genomic organization, incidence, and localization of the SPAN-x family of cancer-testis antigens in melanoma tumors and cell lines.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2004 Jan 1", "Westbrook VA, Schoppee PD, Diekman AB, Klotz KL, Allietta M, Hogan KT, Slingluff CL, Patterson JW, Frierson HF, Irvin WP Jr, Flickinger CJ, Coppola MA, Herr JC", "protein_xref_pubmed", "14734458", "protein_xref_refseq", "NP_115850.2" ], [ "O15520-1", "Identification of six novel autophosphorylation sites on fibroblast growth factor receptor 1 and elucidation of their importance in receptor activation and signal transduction.", "Molecular and cellular biology", "1996 Mar", "Mohammadi M, Dikic I, Sorokin A, Burgess WH, Jaye M, Schlessinger J", "protein_xref_pubmed", "8622701", "protein_xref_refseq", "NP_004456.1" ], [ "Q16873-1", "Phosphorylation of Leukotriene C4 Synthase at Serine 36 Impairs Catalytic Activity.", "The Journal of biological chemistry", "2016 Aug 26", "Ahmad S, Ytterberg AJ, Thulasingam M, Tholander F, Bergman T, Zubarev R, Wetterholm A, Rinaldo-Matthis A, Haeggstrom JZ", "protein_xref_pubmed", "27365393", "protein_xref_refseq", "NP_665874.1" ], [ "P30041-1", "Peroxiredoxin 6 regulates the phosphoinositide 3-kinase/AKT pathway to maintain human sperm viability.", "Molecular human reproduction", "2019 Dec 1", "Fernandez MC, Yu A, Moawad AR, O'Flaherty C", "protein_xref_pubmed", "31651026", "protein_xref_refseq", "NP_004896.1" ], [ "Q6Q4G3-1", "Regulation of human extravillous trophoblast function by membrane-bound peptidases.", "Biochimica et biophysica acta", "2005 Aug 1", "Fujiwara H, Higuchi T, Sato Y, Nishioka Y, Zeng BX, Yoshioka S, Tatsumi K, Ueda M, Maeda M", "protein_xref_pubmed", "15897020", "protein_xref_refseq", "NP_776161.3" ], [ "P05412-1", "Activation of c-Jun by human cytomegalovirus UL42 through JNK activation.", "PloS one", "2020", "Koshizuka T, Inoue N", "protein_xref_pubmed", "32369499", "protein_xref_refseq", "NP_002219.1" ], [ "Q9HD47-1", "Identification and characterization of the human MOG1 gene.", "Gene", "2001 Mar 21", "Marfatia KA, Harreman MT, Fanara P, Vertino PM, Corbett AH", "protein_xref_pubmed", "11290418", "protein_xref_refseq", "NP_001171272.1" ], [ "A8TX70-1", "Three novel collagen VI chains with high homology to the alpha3 chain.", "The Journal of biological chemistry", "2008 Apr 18", "Gara SK, Grumati P, Urciuolo A, Bonaldo P, Kobbe B, Koch M, Paulsson M, Wagener R", "protein_xref_pubmed", "18276594", "protein_xref_refseq", "NP_001265227.1" ], [ "Q8N9W6-1", "Oncogenic Role of BOLL in Colorectal Cancer.", "Digestive diseases and sciences", "2015 Jun", "Kang KJ, Pyo JH, Ryu KJ, Kim SJ, Ha JM, Choi K, Hong SN, Min BH, Chang DK, Son HJ, Rhee PL, Kim JJ, Kim YH", "protein_xref_pubmed", "25605553", "protein_xref_refseq", "NP_001271287.1" ], [ "O94911-1", "ABC gene expression profiles have clinical importance and possibly form a new hallmark of cancer.", "Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine", "2017 May", "Dvorak P, Pesta M, Soucek P", "protein_xref_pubmed", "28468577", "protein_xref_refseq", "NP_001275914.1" ], [ "Q14331-1", "Comprehensive analysis of age-related somatic mutation profiles in Chinese young lung adenocarcinoma patients.", "Cancer medicine", "2019 Apr", "Yang B, Li J, Li F, Zhou H, Shi W, Shi H, Sun S, Sun W, Wang J, Ma J, Yan X, Hu Y, Jiao S", "protein_xref_pubmed", "30821106", "protein_xref_refseq", "NP_004468.1" ], [ "P19440-1", "The human gamma-glutamyltransferase gene family.", "Human genetics", "2008 May", "Heisterkamp N, Groffen J, Warburton D, Sneddon TP", "protein_xref_pubmed", "18357469", "protein_xref_refseq", "NP_001275762.1" ], [ "O75333-1", "PAX9 and TGFB3 are linked to susceptibility to nonsyndromic cleft lip with or without cleft palate in the Japanese: population-based and family-based candidate gene analyses.", "Journal of human genetics", "2006", "Ichikawa E, 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Fenyo D, Jensen TH, Altukhov I, LaCava J", "protein_xref_pubmed", "32960270", "protein_xref_refseq", "NP_002477.1" ], [ "Q5XXA6-1", "Mutation assay of the novel gene DOG1 in gastrointestinal stromal tumors (GISTs).", "Journal of gastroenterology", "2008", "Miwa S, Nakajima T, Murai Y, Takano Y, Sugiyama T", "protein_xref_pubmed", "18648740", "protein_xref_refseq", "NP_060513.5" ], [ "Q8NEH6-1", "MNS1 is essential for spermiogenesis and motile ciliary functions in mice.", "PLoS genetics", "2012", "Zhou J, Yang F, Leu NA, Wang PJ", "protein_xref_pubmed", "22396656", "protein_xref_refseq", "NP_060835.1" ], [ "Q15058-1", "KIF14 promotes tumor progression and metastasis and is an independent predictor of poor prognosis in human gastric cancer.", "Biochimica et biophysica acta. Molecular basis of disease", "2019 Jan", "Yang Z, Li C, Yan C, Li J, Yan M, Liu B, Zhu Z, Wu Y, Gu Q", "protein_xref_pubmed", "30404039", "protein_xref_refseq", "NP_001292721.1" ], [ "Q9BVJ6-1", "Characterization of human colon cancer antigens recognized by autologous antibodies.", "International journal of cancer", "1998 May 29", "Scanlan MJ, Chen YT, Williamson B, Gure AO, Stockert E, Gordan JD, Tureci O, Sahin U, Pfreundschuh M, Old LJ", "protein_xref_pubmed", "9610721", "protein_xref_refseq", "NP_001159693.1" ], [ "Q96NT5-1", "Regulation of differential proton-coupled folate transporter gene expression in human tumors: transactivation by KLF15 with NRF-1 and the role of Sp1.", "The Biochemical journal", "2019 Apr 26", "Hou Z, O'Connor C, Fruhauf J, Orr S, Kim S, Gangjee A, Matherly LH", "protein_xref_pubmed", "30914440", "protein_xref_refseq", "NP_001229295.1" ], [ "O60318-1", "GANP protein encoded on human chromosome 21/mouse chromosome 10 is associated with resistance to mammary tumor development.", "Cancer science", "2016 Apr", "Kuwahara K, Yamamoto-Ibusuki M, Zhang Z, Phimsen S, Gondo N, Yamashita H, Takeo T, Nakagata N, Yamashita D, Fukushima Y, Yamamoto Y, Iwata H, Saya H, Kondo E, Matsuo K, Takeya M, Iwase H, Sakaguchi N", "protein_xref_pubmed", "26749495", "protein_xref_refseq", "NP_003897.2" ], [ "Q9NYG8-1", "Decreased expression of TRAAK channels in Hirschsprung's disease: a possible cause of postoperative dysmotility.", "Pediatric surgery international", "2019 Dec", "O'Donnell AM, Nakamura H, Parekh B, Puri P", "protein_xref_pubmed", "31542828", "protein_xref_refseq", "NP_001304019.1" ], [ "Q9H205-1", "Beta-arrestin2-mediated internalization of mammalian odorant receptors.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2006 Sep 27", "Mashukova A, Spehr M, Hatt H, Neuhaus EM", "protein_xref_pubmed", "17005854", "protein_xref_refseq", "NP_001004489.1" ], [ "Q8TCE6-1", "DENN domain-containing protein FAM45A regulates the homeostasis of late/multivesicular endosomes.", "Biochimica et biophysica acta. Molecular cell research", "2019 May", "Zhang J, Zhang K, Qi L, Hu Q, Shen Z, Liu B, Deng J, Zhang C, Zhang Y", "protein_xref_pubmed", "30771381", "protein_xref_refseq", "NP_001290040.1" ], [ "P23515-1", "Alterations in oligodendrocyte proteins, calcium homeostasis and new potential markers in schizophrenia anterior temporal lobe are revealed by shotgun proteome analysis.", "Journal of neural transmission (Vienna, Austria : 1996)", "2009 Mar", "Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Marangoni S, Novello JC, Maccarrone G, Turck CW, Dias-Neto E", "protein_xref_pubmed", "19034380", "protein_xref_refseq", "NP_002535.3" ], [ "Q7Z5L4-1", "Spata19 is critical for sperm mitochondrial function and male fertility.", "Molecular reproduction and development", "2015 Nov", "Mi Y, Shi Z, Li J", "protein_xref_pubmed", "26265198", "protein_xref_refseq", "NP_001278921.1" ], [ "Q9NQS1-1", "Expression of granulosa cell microRNAs, AVEN and ATRX are associated with human blastocyst development.", "Molecular reproduction and development", "2018 Nov", "O'Doherty AM, O'Brien YM, Browne JA, Wingfield M, O'Shea LC", "protein_xref_pubmed", "29693772", "protein_xref_refseq", "NP_065104.1" ], [ "Q9HCT0-1", "Highly efficient production of functional recombinant human fibroblast growth factor 22 in E. coli and its protective effects on H2O2-lesioned L02cells.", "Protein expression and purification", "2018 Dec", "Yang H, Tian H, Cheng J, Zheng J, Wang D, Sun C, Fernig D, Chen T, Gong W, Wang S, Li X, Jiang C", "protein_xref_pubmed", "29627393", "protein_xref_refseq", "NP_065688.1" ], [ "P85299-1", "Proteome-wide analysis of phospho-regulated PDZ domain interactions.", "Molecular systems biology", "2018 Aug 20", "Sundell GN, Arnold R, Ali M, Naksukpaiboon P, Orts J, Guntert P, Chi CN, Ivarsson Y", "protein_xref_pubmed", "30126976", "protein_xref_refseq", "NP_001017528.1" ], [ "Q9NX24-1", "Cryo-EM structure of substrate-bound human telomerase holoenzyme.", "Nature", "2018 May", "Nguyen THD, Tam J, Wu RA, Greber BJ, Toso D, Nogales E, Collins K", "protein_xref_pubmed", "29695869", "protein_xref_refseq", "NP_001030005.1" ], [ "Q9NPP4-1", "Identification of Ipaf, a human caspase-1-activating protein related to Apaf-1.", "The Journal of biological chemistry", "2001 Jul 27", "Poyet JL, Srinivasula SM, Tnani M, Razmara M, Fernandes-Alnemri T, Alnemri ES", "protein_xref_pubmed", "11390368", "protein_xref_refseq", "NP_001186067.1" ], [ "Q12934-1", "Molecular and structural analysis of genetic variations in congenital cataract.", "Molecular vision", "2013", "Kumar M, Agarwal T, Kaur P, Kumar M, Khokhar S, Dada R", "protein_xref_pubmed", "24319337", "protein_xref_refseq", "NP_001155177.1" ], [ "Q96S59-1", "Scaffolding protein RanBPM and its interactions in diverse signaling pathways in health and disease.", "Discovery medicine", "2018 Apr", "Das S, Haq S, Ramakrishna S", "protein_xref_pubmed", "29723489", "protein_xref_refseq", "NP_005484.2" ], [ "Q6PRD7-1", "Cementum protein 1 (CEMP1) induces a cementoblastic phenotype and reduces osteoblastic differentiation in periodontal ligament cells.", "Journal of cellular physiology", "2012 Feb", "Komaki M, Iwasaki K, Arzate H, Narayanan AS, Izumi Y, Morita I", "protein_xref_pubmed", "21465469", "protein_xref_refseq", "NP_001041677.1" ], [ "Q5DT21-1", "Expression and regulation of murine SPINK12, a potential orthologue of human LEKTI2.", "Experimental dermatology", "2011 Nov", "Reiss K, Meyer-Hoffert U, Fischer J, Sperrhacke M, Wu Z, Dimitrieva O, Krenek P, Suchanova S, Buryova H, Brauer R, Sedlacek R", "protein_xref_pubmed", "21899598", "protein_xref_refseq", "NP_001035523.1" ], [ "Q13046-1", "Redefined nomenclature for members of the carcinoembryonic antigen family.", "Experimental cell research", "1999 Nov 1", "Beauchemin N, Draber P, Dveksler G, Gold P, Gray-Owen S, Grunert F, Hammarstrom S, Holmes KV, Karlsson A, Kuroki M, Lin SH, Lucka L, Najjar SM, Neumaier M, Obrink B, Shively JE, Skubitz KM, Stanners CP, Thomas P, Thompson JA, Virji M, von Kleist S, Wagener C, Watt S, Zimmermann W", "protein_xref_pubmed", "11501563", "protein_xref_refseq", "NP_002774.2" ], [ "Q8IYT3-1", "Replication of previous genome-wide association studies of bone mineral density in premenopausal American women.", "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research", "2010 Aug", "Ichikawa S, Koller DL, Padgett LR, Lai D, Hui SL, Peacock M, Foroud T, Econs MJ", "protein_xref_pubmed", "20200978", "protein_xref_refseq", "NP_079335.2" ], [ "Q96KK5-1", "MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis.", "Immunology and cell biology", "2010 Nov-Dec", "Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W", "protein_xref_pubmed", "20458337", "protein_xref_refseq", "NP_542163.1" ], [ "Q96NI6-1", "Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.", "The pharmacogenomics journal", "2014 Feb", "Avery CL, Sitlani CM, Arking DE, Arnett DK, Bis JC, Boerwinkle E, Buckley BM, Ida Chen YD, de Craen AJ, Eijgelsheim M, Enquobahrie D, Evans DS, Ford I, Garcia ME, Gudnason V, Harris TB, Heckbert SR, Hochner H, Hofman A, Hsueh WC, Isaacs A, Jukema JW, Knekt P, Kors JA, Krijthe BP, Kristiansson K, Laaksonen M, Liu Y, Li X, Macfarlane PW, Newton-Cheh C, Nieminen MS, Oostra BA, Peloso GM, Porthan K, Rice K, Rivadeneira FF, Rotter JI, Salomaa V, Sattar N, Siscovick DS, Slagboom PE, Smith AV, Sotoodehnia N, Stott DJ, Stricker BH, Sturmer T, Trompet S, Uitterlinden AG, van Duijn C, Westendorp RG, Witteman JC, Whitsel EA, Psaty BM", "protein_xref_pubmed", "23459443", "protein_xref_refseq", "NP_001333102.1" ], [ "Q8TF76-1", "A kinase-dependent role for Haspin in antagonizing Wapl and protecting mitotic centromere cohesion.", "EMBO reports", "2018 Jan", "Liang C, Chen Q, Yi Q, Zhang M, Yan H, Zhang B, Zhou L, Zhang Z, Qi F, Ye S, Wang F", "protein_xref_pubmed", "29138236", "protein_xref_refseq", "NP_114171.2" ], [ "P20366-1", "Plasma Neurokinin A Levels Predict Survival in Well-Differentiated Neuroendocrine Tumors of the Small Bowel.", "Pancreas", "2018 Aug", "Woltering EA, Voros BA, Thiagarajan R, Beyer DT, Ramirez RA, Wang YZ, Mamikunian G, Boudreaux JP", "protein_xref_pubmed", "29939909", "protein_xref_refseq", "NP_003173.1" ], [ "Q16342-1", "PDCD2 and NCoR1 as putative tumor suppressors in gastric gastrointestinal stromal tumors.", "Cellular oncology (Dordrecht)", "2016 Apr", "Wang W, Song XW, Bu XM, Zhang N, Zhao CH", "protein_xref_pubmed", "26589942", "protein_xref_refseq", "NP_001186393.1" ], [ "Q9H2Y9-1", "Specific expression of OATPs in primary small cell lung cancer (SCLC) cells as novel biomarkers for diagnosis and therapy.", "Cancer letters", "2015 Jan 28", "Brenner S, Klameth L, Riha J, Scholm M, Hamilton G, Bajna E, Ausch C, Reiner A, Jager W, Thalhammer T, Buxhofer-Ausch V", "protein_xref_pubmed", "25301452", "protein_xref_refseq", "NP_001139480.1" ], [ "Q9GZX5-1", "Functional Evaluation of ZNF350 Missense Genetic Variants Associated with Breast Cancer Susceptibility.", "DNA and cell biology", "2018 Jun", "Zhang N, Lu Y, Liu X, Yu D, Lv Z, Yang M", "protein_xref_pubmed", "29653063", "protein_xref_refseq", "NP_067645.3" ], [ "Q04864-1", "Selection of optimal kappa B/Rel DNA-binding motifs: interaction of both subunits of NF-kappa B with DNA is required for transcriptional activation.", "Molecular and cellular biology", "1992 Oct", "Kunsch C, Ruben SM, Rosen CA", "protein_xref_pubmed", "1406630", "protein_xref_refseq", "NP_001278675.1" ], [ "P78410-1", "The cluster of BTN genes in the extended major histocompatibility complex.", "Genomics", "2001 Feb 1", "Rhodes DA, Stammers M, Malcherek G, Beck S, Trowsdale J", "protein_xref_pubmed", "11170752", "protein_xref_refseq", "NP_001184175.1" ], [ "Q13319-1", "Hyper-phosphorylation of Rb S249 together with CDK5R2/p39 overexpression are associated with impaired cell adhesion and epithelial-to-mesenchymal transition: Implications as a potential lung cancer grading and staging biomarker.", "PloS one", "2018", "Perez-Morales J, Mejias-Morales D, Rivera-Rivera S, Gonzalez-Flores J, Gonzalez-Loperena M, Cordero-Baez FY, Pedreira-Garcia WM, Chardon-Colon C, Caban-Rivera J, Cress WD, Gordian ER, Munoz-Antonia T, Cabrera-Rios M, Isidro A, Coppola D, Rosa M, Boyle TA, Izumi V, Koomen JM, Santiago-Cardona PG", "protein_xref_pubmed", "30452490", "protein_xref_refseq", "NP_003927.1" ], [ "Q9BVC6-1", "Role for phospholipid flippase complex of ATP8A1 and CDC50A proteins in cell migration.", "The Journal of biological chemistry", "2013 Feb 15", "Kato U, Inadome H, Yamamoto M, Emoto K, Kobayashi T, Umeda M", "protein_xref_pubmed", "23269685", "protein_xref_refseq", "NP_076997.1" ] ] }, "readme": "Name\n - Human Protein Citations (RefSeq)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-09-06T14:06:38.983152\n\nModified on\n - 2020-04-10T11:45:37.582881\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_9606.gpff\n URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_9606.gpff\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/human_protein_citations_refseq.csv" }