{ "bcoid": "GLY_000114", "title": "Mouse UniProtKB Xref OMA", "description": "The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_oma", "LMVLTFW", "" ], [ "Q8BH27-1", "protein_xref_oma", "HTSGLCL", "" ], [ "Q8BH26-1", "protein_xref_oma", "WVWATIF", "" ], [ "Q8VF69-1", "protein_xref_oma", "VVIMYFG", "" ], [ "Q8VF62-1", "protein_xref_oma", "NIMFITF", "" ], [ "Q8VF66-1", "protein_xref_oma", "ITFIYAM", "" ], [ "Q8VF65-1", "protein_xref_oma", "INACIFI", "" ], [ "Q8VF64-1", "protein_xref_oma", "SINEAVM", "" ], [ "B2RXV4-1", "protein_xref_oma", "EKPQYPP", "" ], [ "Q9CXG9-1", "protein_xref_oma", "MNEILIC", "" ], [ "Q07968-1", "protein_xref_oma", "IFHGEYI", "" ], [ "Q9CXG3-1", "protein_xref_oma", "HSVQKNF", "" ], [ "B1AQ89-1", "protein_xref_oma", "PTCCCPT", "" ], [ "A0A1B0GST9-1", "protein_xref_oma", "VMIVRCA", "" ], [ "B1AQ87-1", "protein_xref_oma", "RPCCCTT", "" ], [ "B1AQ85-1", "protein_xref_oma", "RPQGCIS", "" ], [ "P03899-1", "protein_xref_oma", "RFPVKYY", "" ], [ "O35153-1", "protein_xref_oma", "IWASERW", "" ], [ "P03893-1", "protein_xref_oma", "WVPEVTQ", "" ], [ "Q9QYH9-1", "protein_xref_oma", "ARAGYYY", "" ], [ "P52479-1", "protein_xref_oma", "FPQYIFG", "" ], [ "A0A1Y7VJ58-1", "protein_xref_oma", "CACYECA", "" ], [ "P02762-1", "protein_xref_oma", "YSQRWGN", "" ], [ "Q9QYH6-1", "protein_xref_oma", "AVCHPLP", "" ], [ "Q3SXJ3-1", "protein_xref_oma", "SECIVQV", "" ], [ "O08537-1", "protein_xref_oma", "SHKEFSQ", "" ], [ "Q08AU7-1", "protein_xref_oma", "CTELCQL", "" ], [ "A0A087WSM5-1", "protein_xref_oma", "AVEQKFE", "" ], [ "A2AVK5-1", "protein_xref_oma", "YTCASHV", "" ], [ "Q80YU0-1", "protein_xref_oma", "YPGSMFL", "" ], [ "Q61406-1", "protein_xref_oma", "SFQAVCQ", "" ], [ "Q5SRT8-1", "protein_xref_oma", "PAGCFDS", "" ], [ "A0A140LIA7-1", "protein_xref_oma", "EKAAWTV", "" ], [ "P70419-1", "protein_xref_oma", "EYSAHHE", "" ], [ "Q9EP78-1", "protein_xref_oma", "ICSEPLC", "" ], [ "Q9EP79-1", "protein_xref_oma", "CIQILMA", "" ], [ "Q3URK3-1", "protein_xref_oma", "FHLKTES", "" ], [ "Q9EP72-1", "protein_xref_oma", "PYPLKMR", "" ], [ "Q9EP73-1", "protein_xref_oma", "CTFRRLG", "" ], [ "Q9EP71-1", "protein_xref_oma", "SHHECVK", "" ], [ "Q9EP75-1", "protein_xref_oma", "ECCTEMI", "" ], [ "Q3URK1-1", "protein_xref_oma", "KVRNAHY", "" ], [ "S4R213-1", "protein_xref_oma", "EYPCVLQ", "" ], [ "P53702-1", "protein_xref_oma", "YPSKFGT", "" ], [ "Q8R349-1", "protein_xref_oma", "QFIDMRR", "" ], [ "Q8R344-1", "protein_xref_oma", "QKGQSDD", "" ], [ "O08911-1", "protein_xref_oma", "PGRDYGH", "" ], [ "O08912-1", "protein_xref_oma", "VAEVWMC", "" ], [ "O08915-1", "protein_xref_oma", "WAMTDDE", "" ], [ "O08914-1", "protein_xref_oma", "MQPWKYD", "" ], [ "O08917-1", "protein_xref_oma", "QYDSEVK", "" ], [ "O08918-1", "protein_xref_oma", "CWDESES", "" ], [ "Q80WC1-1", "protein_xref_oma", "GELKCIS", "" ], [ "Q80WC7-1", "protein_xref_oma", "SDCKRNK", "" ], [ "Q9JHY4-1", "protein_xref_oma", "CCYYNCR", "" ], [ "Q91ZK4-1", "protein_xref_oma", "EMKCERA", "" ], [ "Q91ZK0-1", "protein_xref_oma", "YYQQLHH", "" ], [ "Q8BZM0-1", "protein_xref_oma", "LGTQRCD", "" ], [ "Q8BZM1-1", "protein_xref_oma", "FESCLLR", "" ], [ "Q4VC33-1", "protein_xref_oma", "AHCSQSR", "" ], [ "Q8BTJ4-1", "protein_xref_oma", "KNCSSHM", "" ], [ "Q4G5Y1-1", "protein_xref_oma", "RYRDSRM", "" ], [ "F8VQK3-1", "protein_xref_oma", "QNWPNIH", "" ], [ "A2AT96-1", "protein_xref_oma", "MVYATTE", "" ], [ "Q7M729-1", "protein_xref_oma", "TWYFNST", "" ], [ "Q7M724-1", "protein_xref_oma", "SHYIFFC", "" ], [ "Q7M725-1", "protein_xref_oma", "TEYITYI", "" ], [ "Q7M720-1", "protein_xref_oma", "GLRIMIF", "" ], [ "Q7M721-1", "protein_xref_oma", "FMFCQAT", "" ], [ "Q7M722-1", "protein_xref_oma", "WLFTFPQ", "" ], [ "Q7M723-1", "protein_xref_oma", "FTIWIIT", "" ], [ "P10649-1", "protein_xref_oma", "MILAYWD", "" ], [ "P10648-1", "protein_xref_oma", "FIEQPED", "" ], [ "Q3UHF7-1", "protein_xref_oma", "EHTGKKS", "" ], [ "Q3UHF3-1", "protein_xref_oma", "LNPMNIC", "" ], [ "Q9D516-1", "protein_xref_oma", "ATQADGY", "" ], [ "Q9D517-1", "protein_xref_oma", "EQECANW", "" ], [ "Q9D513-1", "protein_xref_oma", "WGQRACV", "" ], [ "Q9D519-1", "protein_xref_oma", "SEIQIVC", "" ], [ "Q8K2M0-1", "protein_xref_oma", "NMREPVF", "" ], [ "P21661-1", "protein_xref_oma", "QQEGFNR", "" ], [ "Q8BIQ5-1", "protein_xref_oma", "ASHYNSQ", "" ], [ "O88668-1", "protein_xref_oma", "CAHIIFV", "" ], [ "Q8BIQ3-1", "protein_xref_oma", "IVSLDWE", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OMA\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T12:40:33.108688\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_oma.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.csv\n Name: mouse_protein_xref_oma.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_xref_oma.csv" }