{
    "bcoid": "GLY_000013",
    "title": "Mouse EBI-UniProtKB NT file",
    "description": "The Mouse EBI-UniProtKB NT file contains proteome data for mouse [taxid:10090] from UniProtKB and other ...",
    "filename": "mouse_protein_ntdata.nt",
    "filetype": "nt",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Protein",
        "tags": "EMBL-EBI-GlyGen-NT File",
        "file_type": "nt",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "nt_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre><http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Protein> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/version> \"120\"^^<http://www.w3.org/2001/XMLSchema#integer> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/created> \"2014-03-19\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/modified> \"2020-12-02\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/mnemonic> \"PYR1_MOUSE\" .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/reviewed> \"true\"^^<http://www.w3.org/2001/XMLSchema#boolean> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/existence> <http://purl.uniprot.org/core/Evidence_at_Protein_Level_Existence> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/organism> <http://purl.uniprot.org/taxonomy/10090> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/recommendedName> <http://purl.uniprot.org/uniprot/B2RQC6#SIPB3371643A8C122C2> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/encodedBy> <http://purl.uniprot.org/uniprot/B2RQC6#gene-MD513C0409E7568BF81F3FBB50D9F47F510> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/95> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/99> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/445> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/510> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/564> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/568> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/736> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/956> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/isolatedFrom> <http://purl.uniprot.org/tissues/1030> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/B2RQC6-1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/E9QAI5-1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/G3UWN2-1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/E9QAT6-1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/F6S3Z3-1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/B2RQC6-2> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/7> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/21> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/25> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/67> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/963> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/315> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/378> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/436> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/460> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/464> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/479> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/511> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/539> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/597> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/665> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/1185> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/677> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/808> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/862> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0042995> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0005737> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0005829> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0043025> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0016363> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0005654> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0005634> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0032991> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0043195> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0016597> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0004070> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0005524> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0004088> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0004151> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0019899> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0042802> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0004672> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0002134> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0008270> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0006207> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0044205> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0031100> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0035690> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0071364> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0019240> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0017144> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0007565> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0006541> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0007507> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0007595> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0001889> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0006807> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0018107> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0046777> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0014075> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0031000> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0051414> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0032868> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0042594> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0033574> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.B2RQC6_up.classifiedWith_obo.GO_0006228> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/pfam/PF02729> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/pfam/PF00185> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/pfam/PF01979> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/prosite/PS50975> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/prosite/PS51273> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/prosite/PS51855> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/embl/AC109608#not-annotated-cds-B2RQC6> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/embl-cds/EDL37329.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/embl-cds/AAI37857.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/embl-cds/AAI44973.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/ccds/CCDS19171.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/ccds/CCDS80246.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/refseq/NP_001276451.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/refseq/NP_076014.1> .\n<http://purl.uniprot.org/uniprot/B2RQC6> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/smr/B2RQC6> .\n</pre>"
    },
    "readme": "Name\n   - Mouse EBI-UniProtKB NT file\n\nVersion\n   - 1.8.25\n\nCreated on\n  - 2019-01-23T17:21:05.879959\n\nModified on\n   - 2020-04-10T12:31:39.470342\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse EBI-UniProtKB NT file contains proteome data for mouse [taxid:10090] from UniProtKB and other EMBL-EBI resources as per the GlyGen specifications in the NT format. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - NT\n   - proteome\n   - EMBL-EBI\n\n   Pipeline Steps\n   - Step-0: The NT file requires no processing after it is recieved from EMBL-EBI-UniProtKB\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-10090-mus-musculus-2019-05.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-10090-mus-musculus-2019-05.nt\n   Output Subdomain\n      Name: mouse_protein_ntdata.nt\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_ntdata.nt\n      Name: mouse_protein_ntdata.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_ntdata.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_ntdata.nt"
}