{
    "bcoid": "GLY_000554",
    "title": "SARS-CoV2 Protein Information (NCBI RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref NCBI Gene dataset contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Protein Information",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD1-1...",
                "YP_009724389..."
            ],
            [
                "P0DTC2-1...",
                "YP_009724390..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "P0DTD1-1",
                "YP_009724389.1",
                "ORF1ab polyprotein",
                "7096",
                ""
            ],
            [
                "P0DTC2-1",
                "YP_009724390.1",
                "surface glycoprotein",
                "1273",
                ""
            ],
            [
                "P0DTC3-1",
                "YP_009724391.1",
                "ORF3a protein",
                "275",
                ""
            ],
            [
                "P0DTC4-1",
                "YP_009724392.1",
                "envelope protein",
                "75",
                ""
            ],
            [
                "P0DTC5-1",
                "YP_009724393.1",
                "membrane glycoprotein",
                "222",
                ""
            ],
            [
                "P0DTC6-1",
                "YP_009724394.1",
                "ORF6 protein",
                "61",
                ""
            ],
            [
                "P0DTC7-1",
                "YP_009724395.1",
                "ORF7a protein",
                "121",
                ""
            ],
            [
                "P0DTC8-1",
                "YP_009724396.1",
                "ORF8 protein",
                "121",
                ""
            ],
            [
                "P0DTC9-1",
                "YP_009724397.2",
                "nucleocapsid phosphoprotein",
                "419",
                ""
            ],
            [
                "A0A663DJA2-1",
                "YP_009725255.1",
                "ORF10 protein",
                "38",
                ""
            ],
            [
                "P0DTC1-1",
                "YP_009725295.1",
                "ORF1a polyprotein",
                "4405",
                ""
            ],
            [
                "P0DTD8-1",
                "YP_009725318.1",
                "ORF7b",
                "43",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Information (NCBI RefSeq)\n\nVersion\n   - 1.8.25\n\nCreated on\n  - 2021-03-01T11:27:34.342151\n\nModified on\n   - 2021-03-02T11:24:18.505048\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref NCBI Gene dataset contains sarscov2 [taxid:2697049] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_viral.gpff\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/refseq_protein_all_viral.gpff\n      Name: sarscov2_protein_info_refseq.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_info_refseq.csv\n   Output Subdomain\n      Name: sarscov2_protein_info_refseq.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_info_refseq.csv\n      Name: sarscov2_protein_info_refseq.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_info_refseq.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_info_refseq.csv"
}