{ "bcoid": "GLY_000535", "title": "SARS-CoV2 Proteoform Citations (GlyConnect)", "description": "The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the ...", "filename": "sarscov2_proteoform_citations_glyconnect.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0DTC2-1...", "G05724UK..." ], [ "P0DTC2-1...", "G06110VR..." ] ], "headers": [ "uniprotkb_ca...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": 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May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G03382KH", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G51640FO", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G29880MM", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G95977AE", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G72735IY", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G20312EM", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G44215PV", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G81295CK", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G33609NS", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G94854LT", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G64394MX", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G84452RH", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G84820NF", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G80223IX", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G82463GQ", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G23294PN", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G93656SY", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ], [ "P0DTC2-1", "G70101JE", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840" ] ] }, "readme": "Name\n - SARS-CoV2 Proteoform Citations (GlyConnect)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2020-12-11T14:19:01.972822\n\nModified on\n - 2020-12-11T14:24:00.759472\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000530. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: sarscov2_proteoform_citations_glyconnect.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_proteoform_citations_glyconnect.csv\n Name: sarscov2_proteoform_citations_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_proteoform_citations_glyconnect.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_proteoform_citations_glyconnect.csv" }