{
    "bcoid": "GLY_000474",
    "title": "SARS-CoV1 Phosphorylation Sites (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-1) Phosphorylation Sites (UniProtKB) dataset contains sarscov1 [taxid:694009] ...",
    "filename": "sarscov1_proteoform_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Proteoform",
        "tags": "Phosphorylation Sites",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59595-1...",
                "177..."
            ],
            [
                "P59595-1...",
                "177..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "phosphorylat..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "kinase_uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "kinase_gene_name"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "phosphorylated_residue"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_annotation"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                }
            ],
            [
                "P59595-1",
                "177",
                "Ser",
                "",
                "",
                "protein_xref_uniprotkb",
                "P59595",
                "protein_xref_uniprotkb",
                "P59595",
                "Phosphoserine",
                "Phosphoserine; by host",
                ""
            ],
            [
                "P59595-1",
                "177",
                "Ser",
                "",
                "",
                "protein_xref_uniprotkb",
                "P59595",
                "protein_xref_uniprotkb",
                "P59595",
                "Phosphoserine",
                "Phosphoserine; by host",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Phosphorylation Sites (UniProtKB)\n\nVersion\n   - 1.8.25\n\nCreated on\n  - 2020-04-19T12:08:33.749000\n\nModified on\n   - 2020-04-19T12:11:27.306204\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Phosphorylation Sites (UniProtKB) dataset contains sarscov1 [taxid:694009] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - phosphoryation Sites\n   - ptm processing\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-human-sars-coronavirus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-human-sars-coronavirus.nt\n      Name: sarscov1_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov1_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov1_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov1_proteoform_phosphorylation_sites_uniprotkb.csv\n      Name: sarscov1_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov1_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov1_proteoform_phosphorylation_sites_uniprotkb.csv"
}