{ "bcoid": "GLY_000470", "title": "SARS-CoV2 Protein Citations (UniProtKB)", "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Citations dataset contains publication information ...", "filename": "sarscov2_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0DTD2-1...", "A new corona..." ], [ "P0DTD1-1...", "A new corona..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P0DTD2-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD2" ], [ "P0DTD1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase.", "Cell", "2020", "Gao Y., Wang H., Wang Q., Wu J., Xu W., Yang H., Yang X., Zhu Y., Ge J., Huang Y., Liu Z., Yan L., Guddat L.W., Liu Q., Liu F., Rao Z., Zhu C., Gao H., Ji W., Sun Q., Fang X., Jiang B., Lou Z., Gong P., Mu A., Yang X.'", "protein_xref_pubmed", "32526208", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Activation and evasion of type I interferon responses by SARS-CoV-2.", "Nat. Commun.", "2020", "Li L., Wang C., Wang J., Wang W., Wang Y., Zhao Z., Xiao X., Zhou Z., Guo F., Lei X., Dong X., Tian Z., Ren L., Ma R., Xiang Z.", "protein_xref_pubmed", "32733001", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.", "Nat. Struct. Mol. Biol.", "2020", "Ban N., Thiel V., Schubert K., Echeverria B., Gurzeler L.A., Jomaa A., Karousis E.D., Leibundgut M., Muehlemann O., Scaiola A.", "protein_xref_pubmed", "32908316", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Evasion of Type I Interferon by SARS-CoV-2.", "Cell Rep.", "2020", "Wang H., Zhang X., Xie X., Cao Z., Xia H., Chen J.Y., Shi P.Y., Rajsbaum R., Menachery V.D.", "protein_xref_pubmed", "32979938", "protein_xref_uniprotkb", "P0DTD1" ], [ "A0A663DJA2-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany.", "Microbiol Resour Announc", "2020", "Huang J., Aepfelbacher M., Fischer N., Gunther T., Pfefferle S., Grundhoff A., Indenbirken D., Lutgehetmann M., Norz D., Oestereich L.", "protein_xref_pubmed", "32499358", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "P0DTG1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTG1-1", "Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses.", "Infect. Genet. Evol.", "2020", "Cagliani R., Sironi M., Clerici M., Forni D.", "protein_xref_pubmed", "32387562", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTG1-1", "A putative new SARS-CoV protein, 3c, encoded in an ORF overlapping ORF3a.", "J. Gen. Virol.", "2020", "Firth A.E.", "protein_xref_pubmed", "32667280", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTD3-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTD3-1", "Characterization of accessory genes in coronavirus genomes.", "Virol. J.", "2020", "Poch O., Mayer C., Thompson J.D., Michel C.J.", "protein_xref_pubmed", "32854725", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTC7-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC6-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC6" ], [ "P0DTC6-1", "Evasion of Type I Interferon by SARS-CoV-2.", "Cell Rep.", "2020", "Wang H., Zhang X., Xie X., Cao Z., Xia H., Chen J.Y., Shi P.Y., Rajsbaum R., Menachery V.D.", "protein_xref_pubmed", "32979938", "protein_xref_uniprotkb", "P0DTC6" ], [ "P0DTC5-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC5" ], [ "P0DTC4-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC4" ], [ "P0DTC4-1", "SARS-CoV-2 envelope protein topology in eukaryotic membranes.", "Open Biol.", "2020", "Martinez-Gil L., Mingarro I., Acosta-Caceres J.M., Duart G., Garcia-Murria M.J., Grau B.", "protein_xref_pubmed", "32898469", "protein_xref_uniprotkb", "P0DTC4" ], [ "P0DTC3-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC3" ], [ "P0DTC2-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.", "Science", "2020", "Wang N., McLellan J.S., Graham B.S., Hsieh C.L., Abiona O., Corbett K.S., Goldsmith J.A., Wrapp D.", "protein_xref_pubmed", "32075877", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor.", "Cell", "2020", "Poehlmann S., Schroeder S., Drosten C., Hoffmann M., Herrler G., Erichsen S., Herrler T., Kleine-Weber H., Krueger N., Mueller M.A., Nitsche A., Schiergens T.S., Wu N.H.", "protein_xref_pubmed", "32142651", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "Structure, function, and antigenicity of the SARS-CoV-2 spike glycoprotein.", "Cell", "2020", "Park Y.J., McGuire A.T., Tortorici M.A., Veesler D., Wall A., Walls A.C.", "protein_xref_pubmed", "32155444", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.", "Cell", "2020", "Tang H., Parker M.D., Whelan S.P., Evans C.M., Yoon H., Saphire E.O., Abfalterer W., Bhattacharya T., Fischer W.M., Foley B., Freeman T.M., Giorgi E.E., Gnanakaran S., Hastie K.M., Hengartner N., Korber B., LaBranche C.C., McDanal C., Montefiori D.C., Moon-Walker A., Partridge D.G., Perez L.G., Theiler J., de Silva T.I.", "protein_xref_pubmed", "32697968", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide.", "Sci. Rep.", "2020", "Bundalovic-Torma C., Eshaghi A., Grana-Miraglia L., Groves H.E., Gubbay J.B., Gutierrez J.M., Guttman D.S., Isabel M.R., Isabel S., Patel S.N., Poutanen S.M., Poutanen T.", "protein_xref_pubmed", "32820179", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC2-1", "Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition.", "Sci. Rep.", "2020", "Ito K., Montgomery D., Woods R.J., Grant O.C.", "protein_xref_pubmed", "32929138", "protein_xref_uniprotkb", "P0DTC2" ], [ "P0DTC1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC1" ], [ "P0DTC1-1", "Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase.", "Cell", "2020", "Gao Y., Wang H., Wang Q., Wu J., Xu W., Yang H., Yang X., Zhu Y., Ge J., Huang Y., Liu Z., Yan L., Guddat L.W., Liu Q., Liu F., Rao Z., Zhu C., Gao H., Ji W., Sun Q., Fang X., Jiang B., Lou Z., Gong P., Mu A., Yang X.'", "protein_xref_pubmed", "32526208", "protein_xref_uniprotkb", "P0DTC1" ], [ "P0DTC1-1", "Activation and evasion of type I interferon responses by SARS-CoV-2.", "Nat. Commun.", "2020", "Li L., Wang C., Wang J., Wang W., Wang Y., Zhao Z., Xiao X., Zhou Z., Guo F., Lei X., Dong X., Tian Z., Ren L., Ma R., Xiang Z.", "protein_xref_pubmed", "32733001", "protein_xref_uniprotkb", "P0DTC1" ], [ "P0DTC1-1", "SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.", "Nat. Struct. Mol. Biol.", "2020", "Ban N., Thiel V., Schubert K., Echeverria B., Gurzeler L.A., Jomaa A., Karousis E.D., Leibundgut M., Muehlemann O., Scaiola A.", "protein_xref_pubmed", "32908316", "protein_xref_uniprotkb", "P0DTC1" ], [ "P0DTC1-1", "Evasion of Type I Interferon by SARS-CoV-2.", "Cell Rep.", "2020", "Wang H., Zhang X., Xie X., Cao Z., Xia H., Chen J.Y., Shi P.Y., Rajsbaum R., Menachery V.D.", "protein_xref_pubmed", "32979938", "protein_xref_uniprotkb", "P0DTC1" ], [ "P0DTD8-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD8" ], [ "P0DTG0-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTG0" ], [ "P0DTG0-1", "Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan.", "Emerg. Microbes Infect.", "2020", "Zhu Z., Yuan S., Kok K.H., Chu H., Yuen K.Y., Chan J.F., To K.K.", "protein_xref_pubmed", "31987001", "protein_xref_uniprotkb", "P0DTG0" ], [ "P0DTF1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTF1" ], [ "P0DTF1-1", "Characterization of accessory genes in coronavirus genomes.", "Virol. J.", "2020", "Poch O., Mayer C., Thompson J.D., Michel C.J.", "protein_xref_pubmed", "32854725", "protein_xref_uniprotkb", "P0DTF1" ], [ "P0DTF1-1", "SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant.", "Cell Rep.", "2020", "Nakagawa S., Sato K., Fukushi M., Koyanagi Y., Kimura I., Konno Y., Irie T., Gifford R.J., Sauter D., Uriu K.", "protein_xref_pubmed", "32941788", "protein_xref_uniprotkb", "P0DTF1" ], [ "P0DTC9-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC9" ], [ "P0DTC8-1", "A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.", "Lancet", "2020", "Liu J., Yang J., Chen H., Yuan S., Chan W.M., Cai J.P., Kok K.H., Chu H., Yip C.C., Chan K.H., Yuen K.Y., Chan J.F., Cheng V.C., Hui C.K., Ip J.D., Lo S.K., Poon R.W., Poon V.K., To K.K., Tsoi H.W., Xing F.", "protein_xref_pubmed", "31986261", "protein_xref_uniprotkb", "P0DTC8" ], [ "P0DTC8-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Zhang Y.L., Tian J.H., Zheng J.J., Zhang Y.Z., Chen Y.M., Chen Y.-M., Wang Q.M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J., Dai F.H., Pei Y.Y., Song Z.G., Tao Z.W., Yuan M.L.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC8" ], [ "P0DTC8-1", "Characterization of accessory genes in coronavirus genomes.", "Virol. J.", "2020", "Poch O., Mayer C., Thompson J.D., Michel C.J.", "protein_xref_pubmed", "32854725", "protein_xref_uniprotkb", "P0DTC8" ] ] }, "readme": "Name\n - SARS-CoV2 Protein Citations (UniProtKB)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2020-04-19T11:32:35.963024\n\nModified on\n - 2020-04-19T11:33:03.867613\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Citations dataset contains publication information for sarscov2 [taxid:2697049] UniProtKB accessions that includes PMID, journal name, date and author and title. The dataset is derived from 2020-01 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sars-cov-2.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-sars-cov-2.nt\n Name: sarscov2_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_masterlist.csv\n Output Subdomain\n Name: sarscov2_protein_citations_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_citations_uniprotkb.csv\n Name: sarscov2_protein_citations_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/sarscov2_protein_citations_uniprotkb.csv" }